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freebsd-ports/biology/ugene/pkg-plist
Alexey Dokuchaev 19bbb2d91d - Update Unipro UGENE and documentation to version 1.14.0 
- Remove patches integrated upstream (it's nice to have direct contact)
- Sort USES and pkg-plist, cleanup Makefile a bit while here

Approved by:	maintainer (implicit)
2014-09-01 07:38:59 +00:00

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bin/ugene
lib/ugene/libU2Algorithm.so
lib/ugene/libU2Algorithm.so.1
lib/ugene/libU2Algorithm.so.1.0
lib/ugene/libU2Algorithm.so.1.0.0
lib/ugene/libU2Core.so
lib/ugene/libU2Core.so.1
lib/ugene/libU2Core.so.1.0
lib/ugene/libU2Core.so.1.0.0
lib/ugene/libU2Designer.so
lib/ugene/libU2Designer.so.1
lib/ugene/libU2Designer.so.1.0
lib/ugene/libU2Designer.so.1.0.0
lib/ugene/libU2Formats.so
lib/ugene/libU2Formats.so.1
lib/ugene/libU2Formats.so.1.0
lib/ugene/libU2Formats.so.1.0.0
lib/ugene/libU2Gui.so
lib/ugene/libU2Gui.so.1
lib/ugene/libU2Gui.so.1.0
lib/ugene/libU2Gui.so.1.0.0
lib/ugene/libU2Lang.so
lib/ugene/libU2Lang.so.1
lib/ugene/libU2Lang.so.1.0
lib/ugene/libU2Lang.so.1.0.0
lib/ugene/libU2Private.so
lib/ugene/libU2Private.so.1
lib/ugene/libU2Private.so.1.0
lib/ugene/libU2Private.so.1.0.0
lib/ugene/libU2Remote.so
lib/ugene/libU2Remote.so.1
lib/ugene/libU2Remote.so.1.0
lib/ugene/libU2Remote.so.1.0.0
lib/ugene/libU2Script.so
lib/ugene/libU2Script.so.1
lib/ugene/libU2Script.so.1.0
lib/ugene/libU2Script.so.1.0.0
lib/ugene/libU2Test.so
lib/ugene/libU2Test.so.1
lib/ugene/libU2Test.so.1.0
lib/ugene/libU2Test.so.1.0.0
lib/ugene/libU2View.so
lib/ugene/libU2View.so.1
lib/ugene/libU2View.so.1.0
lib/ugene/libU2View.so.1.0.0
lib/ugene/libgtest.so
lib/ugene/libgtest.so.1
lib/ugene/libgtest.so.1.0
lib/ugene/libgtest.so.1.0.0
lib/ugene/libugenedb.so
lib/ugene/libugenedb.so.1
lib/ugene/libugenedb.so.1.0
lib/ugene/libugenedb.so.1.0.0
lib/ugene/plugins/CoreTests.license
lib/ugene/plugins/CoreTests.plugin
lib/ugene/plugins/GUITestBase.license
lib/ugene/plugins/GUITestBase.plugin
lib/ugene/plugins/annotator.license
lib/ugene/plugins/annotator.plugin
lib/ugene/plugins/api_tests.license
lib/ugene/plugins/api_tests.plugin
lib/ugene/plugins/ball.license
lib/ugene/plugins/ball.plugin
lib/ugene/plugins/biostruct3d_view.license
lib/ugene/plugins/biostruct3d_view.plugin
lib/ugene/plugins/browser_support.license
lib/ugene/plugins/browser_support.plugin
lib/ugene/plugins/chroma_view.license
lib/ugene/plugins/chroma_view.plugin
lib/ugene/plugins/circular_view.license
lib/ugene/plugins/circular_view.plugin
lib/ugene/plugins/dbi_bam.license
lib/ugene/plugins/dbi_bam.plugin
lib/ugene/plugins/dna_export.license
lib/ugene/plugins/dna_export.plugin
lib/ugene/plugins/dna_flexibility.license
lib/ugene/plugins/dna_flexibility.plugin
lib/ugene/plugins/dna_graphpack.license
lib/ugene/plugins/dna_graphpack.plugin
lib/ugene/plugins/dna_stat.license
lib/ugene/plugins/dna_stat.plugin
lib/ugene/plugins/dotplot.license
lib/ugene/plugins/dotplot.plugin
lib/ugene/plugins/enzymes.license
lib/ugene/plugins/enzymes.plugin
lib/ugene/plugins/expert_discovery.license
lib/ugene/plugins/expert_discovery.plugin
lib/ugene/plugins/external_tool_support.license
lib/ugene/plugins/external_tool_support.plugin
lib/ugene/plugins/genome_aligner.license
lib/ugene/plugins/genome_aligner.plugin
lib/ugene/plugins/gor4.license
lib/ugene/plugins/gor4.plugin
lib/ugene/plugins/hmm2.license
lib/ugene/plugins/hmm2.plugin
%%SSE2%%lib/ugene/plugins/hmm3.license
%%SSE2%%lib/ugene/plugins/hmm3.plugin
lib/ugene/plugins/kalign.license
lib/ugene/plugins/kalign.plugin
lib/ugene/plugins/libCoreTests.so
lib/ugene/plugins/libCoreTests.so.1
lib/ugene/plugins/libCoreTests.so.1.0
lib/ugene/plugins/libCoreTests.so.1.0.0
lib/ugene/plugins/libGUITestBase.so
lib/ugene/plugins/libGUITestBase.so.1
lib/ugene/plugins/libGUITestBase.so.1.0
lib/ugene/plugins/libGUITestBase.so.1.0.0
lib/ugene/plugins/libannotator.so
lib/ugene/plugins/libannotator.so.1
lib/ugene/plugins/libannotator.so.1.0
lib/ugene/plugins/libannotator.so.1.0.0
lib/ugene/plugins/libapi_tests.so
lib/ugene/plugins/libapi_tests.so.1
lib/ugene/plugins/libapi_tests.so.1.0
lib/ugene/plugins/libapi_tests.so.1.0.0
lib/ugene/plugins/libball.so
lib/ugene/plugins/libball.so.1
lib/ugene/plugins/libball.so.1.0
lib/ugene/plugins/libball.so.1.0.0
lib/ugene/plugins/libbiostruct3d_view.so
lib/ugene/plugins/libbiostruct3d_view.so.1
lib/ugene/plugins/libbiostruct3d_view.so.1.0
lib/ugene/plugins/libbiostruct3d_view.so.1.0.0
lib/ugene/plugins/libbrowser_support.so
lib/ugene/plugins/libbrowser_support.so.1
lib/ugene/plugins/libbrowser_support.so.1.0
lib/ugene/plugins/libbrowser_support.so.1.0.0
lib/ugene/plugins/libchroma_view.so
lib/ugene/plugins/libchroma_view.so.1
lib/ugene/plugins/libchroma_view.so.1.0
lib/ugene/plugins/libchroma_view.so.1.0.0
lib/ugene/plugins/libcircular_view.so
lib/ugene/plugins/libcircular_view.so.1
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lib/ugene/plugins/libcircular_view.so.1.0.0
lib/ugene/plugins/libdbi_bam.so
lib/ugene/plugins/libdbi_bam.so.1
lib/ugene/plugins/libdbi_bam.so.1.0
lib/ugene/plugins/libdbi_bam.so.1.0.0
lib/ugene/plugins/libdna_export.so
lib/ugene/plugins/libdna_export.so.1
lib/ugene/plugins/libdna_export.so.1.0
lib/ugene/plugins/libdna_export.so.1.0.0
lib/ugene/plugins/libdna_flexibility.so
lib/ugene/plugins/libdna_flexibility.so.1
lib/ugene/plugins/libdna_flexibility.so.1.0
lib/ugene/plugins/libdna_flexibility.so.1.0.0
lib/ugene/plugins/libdna_graphpack.so
lib/ugene/plugins/libdna_graphpack.so.1
lib/ugene/plugins/libdna_graphpack.so.1.0
lib/ugene/plugins/libdna_graphpack.so.1.0.0
lib/ugene/plugins/libdna_stat.so
lib/ugene/plugins/libdna_stat.so.1
lib/ugene/plugins/libdna_stat.so.1.0
lib/ugene/plugins/libdna_stat.so.1.0.0
lib/ugene/plugins/libdotplot.so
lib/ugene/plugins/libdotplot.so.1
lib/ugene/plugins/libdotplot.so.1.0
lib/ugene/plugins/libdotplot.so.1.0.0
lib/ugene/plugins/libenzymes.so
lib/ugene/plugins/libenzymes.so.1
lib/ugene/plugins/libenzymes.so.1.0
lib/ugene/plugins/libenzymes.so.1.0.0
lib/ugene/plugins/libexpert_discovery.so
lib/ugene/plugins/libexpert_discovery.so.1
lib/ugene/plugins/libexpert_discovery.so.1.0
lib/ugene/plugins/libexpert_discovery.so.1.0.0
lib/ugene/plugins/libexternal_tool_support.so
lib/ugene/plugins/libexternal_tool_support.so.1
lib/ugene/plugins/libexternal_tool_support.so.1.0
lib/ugene/plugins/libexternal_tool_support.so.1.0.0
lib/ugene/plugins/libgenome_aligner.so
lib/ugene/plugins/libgenome_aligner.so.1
lib/ugene/plugins/libgenome_aligner.so.1.0
lib/ugene/plugins/libgenome_aligner.so.1.0.0
lib/ugene/plugins/libgor4.so
lib/ugene/plugins/libgor4.so.1
lib/ugene/plugins/libgor4.so.1.0
lib/ugene/plugins/libgor4.so.1.0.0
lib/ugene/plugins/libhmm2.so
lib/ugene/plugins/libhmm2.so.1
lib/ugene/plugins/libhmm2.so.1.0
lib/ugene/plugins/libhmm2.so.1.0.0
%%SSE2%%lib/ugene/plugins/libhmm3.so
%%SSE2%%lib/ugene/plugins/libhmm3.so.1
%%SSE2%%lib/ugene/plugins/libhmm3.so.1.0
%%SSE2%%lib/ugene/plugins/libhmm3.so.1.0.0
lib/ugene/plugins/libkalign.so
lib/ugene/plugins/libkalign.so.1
lib/ugene/plugins/libkalign.so.1.0
lib/ugene/plugins/libkalign.so.1.0.0
lib/ugene/plugins/liblinkdata_support.so
lib/ugene/plugins/liblinkdata_support.so.1
lib/ugene/plugins/liblinkdata_support.so.1.0
lib/ugene/plugins/liblinkdata_support.so.1.0.0
lib/ugene/plugins/libopencl_support.so
lib/ugene/plugins/libopencl_support.so.1
lib/ugene/plugins/libopencl_support.so.1.0
lib/ugene/plugins/libopencl_support.so.1.0.0
lib/ugene/plugins/liborf_marker.so
lib/ugene/plugins/liborf_marker.so.1
lib/ugene/plugins/liborf_marker.so.1.0
lib/ugene/plugins/liborf_marker.so.1.0.0
lib/ugene/plugins/libperf_monitor.so
lib/ugene/plugins/libperf_monitor.so.1
lib/ugene/plugins/libperf_monitor.so.1.0
lib/ugene/plugins/libperf_monitor.so.1.0.0
lib/ugene/plugins/libphylip.so
lib/ugene/plugins/libphylip.so.1
lib/ugene/plugins/libphylip.so.1.0
lib/ugene/plugins/libphylip.so.1.0.0
lib/ugene/plugins/libprimer3.so
lib/ugene/plugins/libprimer3.so.1
lib/ugene/plugins/libprimer3.so.1.0
lib/ugene/plugins/libprimer3.so.1.0.0
lib/ugene/plugins/libpsipred.so
lib/ugene/plugins/libpsipred.so.1
lib/ugene/plugins/libpsipred.so.1.0
lib/ugene/plugins/libpsipred.so.1.0.0
lib/ugene/plugins/libptools.so
lib/ugene/plugins/libptools.so.1
lib/ugene/plugins/libptools.so.1.0
lib/ugene/plugins/libptools.so.1.0.0
lib/ugene/plugins/libquery_designer.so
lib/ugene/plugins/libquery_designer.so.1
lib/ugene/plugins/libquery_designer.so.1.0
lib/ugene/plugins/libquery_designer.so.1.0.0
lib/ugene/plugins/libremote_blast.so
lib/ugene/plugins/libremote_blast.so.1
lib/ugene/plugins/libremote_blast.so.1.0
lib/ugene/plugins/libremote_blast.so.1.0.0
lib/ugene/plugins/libremote_service.so
lib/ugene/plugins/libremote_service.so.1
lib/ugene/plugins/libremote_service.so.1.0
lib/ugene/plugins/libremote_service.so.1.0.0
lib/ugene/plugins/librepeat_finder.so
lib/ugene/plugins/librepeat_finder.so.1
lib/ugene/plugins/librepeat_finder.so.1.0
lib/ugene/plugins/librepeat_finder.so.1.0.0
lib/ugene/plugins/libsitecon.so
lib/ugene/plugins/libsitecon.so.1
lib/ugene/plugins/libsitecon.so.1.0
lib/ugene/plugins/libsitecon.so.1.0.0
lib/ugene/plugins/libsmith_waterman.so
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lib/ugene/plugins/libsnp_effect.so
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lib/ugene/plugins/libtest_runner.so
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lib/ugene/plugins/libvariants.so
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lib/ugene/plugins/libweight_matrix.so
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lib/ugene/plugins/libworkflow_designer.so
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lib/ugene/plugins/linkdata_support.license
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lib/ugene/plugins/opencl_support.license
lib/ugene/plugins/opencl_support.plugin
lib/ugene/plugins/orf_marker.license
lib/ugene/plugins/orf_marker.plugin
lib/ugene/plugins/perf_monitor.license
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lib/ugene/plugins/phylip.license
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lib/ugene/plugins/primer3.license
lib/ugene/plugins/primer3.plugin
lib/ugene/plugins/psipred.license
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lib/ugene/plugins/ptools.license
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lib/ugene/plugins/query_designer.license
lib/ugene/plugins/query_designer.plugin
lib/ugene/plugins/remote_blast.license
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lib/ugene/plugins/repeat_finder.plugin
lib/ugene/plugins/sitecon.license
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%%NOX64%%lib/ugene/plugins/umuscle.license
%%NOX64%%lib/ugene/plugins/umuscle.plugin
lib/ugene/plugins/variants.license
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lib/ugene/plugins/weight_matrix.license
lib/ugene/plugins/weight_matrix.plugin
lib/ugene/plugins/workflow_designer.license
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lib/ugene/transl_cs.qm
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lib/ugene/transl_ru.qm
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lib/ugene/ugene
lib/ugene/ugenecl
lib/ugene/ugenem
lib/ugene/ugeneui
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share/applications/ugene.desktop
share/pixmaps/ugene.png
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%%DATADIR%%/DBXRefRegistry.txt
%%DATADIR%%/back_translation/Bacteria/Arthrobacter_aurescens_TC1.cut
%%DATADIR%%/back_translation/Bacteria/Bacillus_subtilis.cut
%%DATADIR%%/back_translation/Bacteria/Escherichia_coli.cut
%%DATADIR%%/back_translation/Bacteria/Haemophilus_influenzae.cut
%%DATADIR%%/back_translation/Bacteria/Helicobacter_pylori.cut
%%DATADIR%%/back_translation/Bacteria/Listeria_monocytogenes.cut
%%DATADIR%%/back_translation/Bacteria/Neisseria_meningitidis.cut
%%DATADIR%%/back_translation/Bacteria/Salmonella_typhimurium_LT2.cut
%%DATADIR%%/back_translation/Bacteria/Streptomyces_coelicolor_A3(2).cut
%%DATADIR%%/back_translation/Bacteria/Sulfolobus_solfataricus_P2.cut
%%DATADIR%%/back_translation/Invertebrates/Apis_mellifera_(honey_bee).cut
%%DATADIR%%/back_translation/Invertebrates/Caenorhabditis_elegans.cut
%%DATADIR%%/back_translation/Invertebrates/Drosophila_melanogaster_(fruit_fly).cut
%%DATADIR%%/back_translation/Invertebrates/Plasmodium_falciparum_(malaria_parasite_P._falciparum).cut
%%DATADIR%%/back_translation/Invertebrates/mitochondrion_Caenorhabditis_elegans.cut
%%DATADIR%%/back_translation/Invertebrates/mitochondrion_Drosophila_melanogaster_(fruit_fly).cut
%%DATADIR%%/back_translation/Mammalia/Bos_taurus_(cow).cut
%%DATADIR%%/back_translation/Mammalia/Canis_familiaris_(dog).cut
%%DATADIR%%/back_translation/Mammalia/Sus_scrofa_(pig).cut
%%DATADIR%%/back_translation/Mammalia/mitochondrion_Bos_taurus_(cow).cut
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%%DATADIR%%/back_translation/Plants/Arabidopsis_thaliana_(thale_cress).cut
%%DATADIR%%/back_translation/Plants/Oryza_sativa.cut
%%DATADIR%%/back_translation/Plants/Zea_mays.cut
%%DATADIR%%/back_translation/Primates/Homo_sapiens_(human).cut
%%DATADIR%%/back_translation/Primates/Pan_troglodytes_(chimpanzee).cut
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%%DATADIR%%/back_translation/Rodents/Mus_musculus_(house_mouse).cut
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%%DATADIR%%/position_weight_matrix/JASPAR/insects/MA0457.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/insects/MA0458.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/insects/MA0459.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/insects/MA0460.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/insects/matrix_list.txt
%%DATADIR%%/position_weight_matrix/JASPAR/nematodes/MA0260.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/nematodes/MA0261.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/nematodes/MA0262.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/nematodes/MA0263.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/nematodes/MA0264.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/nematodes/matrix_list.txt
%%DATADIR%%/position_weight_matrix/JASPAR/plants/MA0001.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/plants/MA0005.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/plants/MA0008.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/plants/MA0020.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/plants/MA0021.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/plants/MA0034.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/plants/MA0044.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/plants/MA0045.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/plants/MA0053.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/plants/MA0054.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/plants/MA0064.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/plants/MA0082.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/plants/MA0096.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/plants/MA0097.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/plants/MA0110.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/plants/MA0120.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/plants/MA0121.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/plants/MA0123.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/plants/MA0127.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/plants/MA0128.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/plants/MA0129.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/plants/matrix_list.txt
%%DATADIR%%/position_weight_matrix/JASPAR/urochordates/MA0118.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/urochordates/matrix_list.txt
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0002.2.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0003.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0004.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0006.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0007.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0009.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0014.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0017.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0018.2.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0019.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0024.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0025.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0027.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0028.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0029.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0030.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0031.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0032.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0033.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0035.2.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0036.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0037.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0038.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0039.2.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0040.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0041.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0042.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0043.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0046.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0047.2.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0048.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0050.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0051.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0052.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0055.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0056.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0057.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0058.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0059.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0060.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0061.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0062.2.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0063.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0065.2.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0066.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0067.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0068.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0069.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0070.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0071.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0072.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0073.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0074.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0075.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0076.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0077.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0078.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0079.2.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0080.2.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0081.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0083.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0084.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0087.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0088.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0089.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0090.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0091.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0092.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0093.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0095.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0098.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0099.2.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0100.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0101.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0102.2.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0103.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0104.2.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0105.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0106.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0107.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0108.2.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0109.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0111.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0112.2.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0113.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0114.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0115.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0116.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0117.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0119.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0122.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0124.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0125.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0130.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0131.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0132.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0133.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0135.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0136.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0137.2.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0138.2.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0139.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0140.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0141.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0142.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0143.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0144.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0145.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0146.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0147.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0148.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0149.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0150.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0151.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0152.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0153.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0154.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0155.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0156.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0157.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0158.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0159.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0160.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0161.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0162.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0163.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0164.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0258.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0259.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/MA0442.1.pfm
%%DATADIR%%/position_weight_matrix/JASPAR/vertebrates/matrix_list.txt
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Alx3_3418.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Alx4_1744.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Arx_1738.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Bapx1_2343.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Barhl1_2590.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Barhl2_3868.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Barx1_2877.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Barx2_3447.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Bsx_3483.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Cart1_0997.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Cart1_1275.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Cdx1_2245.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Cdx2_4272.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Cphx_3484.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Crx_3485.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Cutl1_3494.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Cutl1_3494.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Dbx1_3486.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Dbx2_3487.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Dlx1_1741.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Dlx2_2273.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Dlx3_1030.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Dlx4_3488.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Dlx5_3419.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Dmbx1_2277.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Dobox4_3956.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Dobox5_3493.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Duxl_1286.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Emx2_3420.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/En1_3123.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/En2_0952.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Esx1_3124.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Evx1_3952.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Evx2_2645.3.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Gbx1_2883.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Gbx2_3110.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Gsc_2327.3.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Gsh2_3990.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hdx_3845.3.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hlx1_2350.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hlxb9_3422.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hmbox1_2674.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hmx1_3423.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hmx2_3424.3.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hmx3_3490.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Homez_1063.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hoxa10_2318.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hoxa11_2218.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hoxa13_3126.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hoxa1_3425.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hoxa2_3079.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hoxa3_2783.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hoxa4_3426.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hoxa5_3415.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hoxa6_1040.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hoxa7_2668.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hoxa7_3750.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hoxa9_2622.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hoxb13_3479.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hoxb3_1720.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hoxb4_2627.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hoxb5_3122.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hoxb6_3428.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hoxb7_3953.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hoxb8_3780.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hoxb9_3413.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hoxc10_2779.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hoxc11_3718.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hoxc12_3480.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hoxc13_3127.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hoxc4_3491.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hoxc5_2630.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hoxc6_3954.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hoxc8_3429.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hoxc9_2367.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hoxd10_2368.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hoxd11_3873.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hoxd12_3481.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hoxd13_2356.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hoxd1_3448.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hoxd3_1742.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Hoxd8_2644.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Ipf1_3815.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Irx2_0900.3.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Irx3_0920.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Irx3_2226.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Irx4_2242.3.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Irx5_2385.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Irx6_2623.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Isl2_3430.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Isx_3445.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Lbx2_3869.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Lhx1_2240.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Lhx2_0953.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Lhx3_3431.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Lhx4_1719.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Lhx5_2279.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Lhx6_2272.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Lhx6_3432.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Lhx8_2247.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Lhx9_3492.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Lmx1a_2238.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Lmx1b_3433.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Meis1_2335.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Meox1_2310.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Mrg1_2246.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Mrg2_2302.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Msx1_3031.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Msx2_3449.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Msx3_3206.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Nkx1-1_3856.3.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Nkx1-2_3214.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Nkx2-2_2823.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Nkx2-3_3435.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Nkx2-4_3074.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Nkx2-5_3436.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Nkx2-6_3437.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Nkx2-9_3082.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Nkx3-1_2923.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Nkx6-1_2825.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Nkx6-1_2825.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Nkx6-3_3446.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Obox1_3970.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Obox2_3438.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Obox3_3439.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Obox5_2284.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Obox5_3963.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Obox6_3440.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Og2x_3719.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Otp_3496.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Otx1_2325.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Otx2_3441.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Pax4_3989.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Pax6_3838.3.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Pax7_3783.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Pbx1_3203.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Phox2a_3947.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Phox2b_3948.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Pitx1_2312.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Pitx2_2274.3.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Pitx3_3497.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Pknox1_2364.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Pknox2_3077.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Pou1f1_3818.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Pou2f1_3081.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Pou2f2_3748.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Pou2f3_3986.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Pou3f1_3819.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Pou3f2_2824.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Pou3f3_3235.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Pou3f4_3773.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Pou4f3_2791.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Pou6f1_1731.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Pou6f1_3733.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Prop1_3949.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Prrx1_3442.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Prrx2_3072.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Rax_3443.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Rhox11_1765.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Rhox11_2205.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Rhox6_4251.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Shox2_2641.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Six1_0935.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Six2_2307.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Six3_1732.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Six4_2860.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Six6_2267.4.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Six6_2267.5.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Tcf1_2666.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Tcf2_0913.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Tgif1_2342.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Tgif2_3451.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Titf1_1722.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Tlx2_3498.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Uncx4.1_2281.2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Vax1_3499.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Vax2_3500.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/Cell08/Vsx1_1728.1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Aft1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Aro80.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Asg1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Bas1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Cbf1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Cep3.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Cha4.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Cup9.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Ecm22.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Fhl1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Fkh1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Fkh2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Gal4.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Gat1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Gat3.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Gat4.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Gcn4.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Gln3.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Gsm1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Gzf3.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Hal9.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Leu3.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Lys14.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Matalpha2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Mbp1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Mcm1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Met32.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Mga1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Mig1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Mig2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Mig3.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Ndt80.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Nhp6a.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Nhp6b.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Nrg1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Oaf1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Pbf1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Pbf2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Pdr1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Phd1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Pho2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Pho4.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Put3.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Rap1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Rdr1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Rds1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Rds2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Rgt1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Rph1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Rpn4.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Rsc3.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Rsc30.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Rtg3.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Sfl1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Sfp1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Sip4.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Skn7.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Smp1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Spt15.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Srd1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Stb3.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Stp2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Stp4.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Sum1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Sut2.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Tbf1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Tbs1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Tea1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Tec1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Tye7.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Ume6.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Usv1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Xbp1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Yap1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Yap6.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Ybr239c.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Ydr520c.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Yer130c.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Ygr067c.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Ykl222c.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Yll054c.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Yml081w.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Ynr063w.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Yox1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Ypr013c.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Ypr015c.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Ypr196w.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Yrm1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/GR09/Yrr1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/NBT06/Cbf1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/NBT06/Ceh-22.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/NBT06/Oct-1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/NBT06/Rap1.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/NBT06/Zif268.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/PNAS08/Cgd2_3490.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/PNAS08/PF14_0633.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/PNAS08/PFF0200c.pwm
%%DATADIR%%/position_weight_matrix/UniPROBE/all_uniprobe.csv
%%DATADIR%%/primer3/drosophila.w.transposons.txt
%%DATADIR%%/primer3/humrep_and_simple.txt
%%DATADIR%%/primer3/rodent_ref.txt
%%DATADIR%%/primer3/rodrep_and_simple.txt
%%DATADIR%%/query_samples/RepeatsWithORF.uql
%%DATADIR%%/query_samples/SimpleGene.uql
%%DATADIR%%/samples/ABIF/A01.abi
%%DATADIR%%/samples/ACE/BL060C3.ace
%%DATADIR%%/samples/ACE/K26.ace
%%DATADIR%%/samples/Assembly/chrM.fa
%%DATADIR%%/samples/Assembly/chrM.sam
%%DATADIR%%/samples/Assembly/chrM.sorted.bam
%%DATADIR%%/samples/CLUSTALW/COI.aln
%%DATADIR%%/samples/CLUSTALW/HIV-1.aln
%%DATADIR%%/samples/CLUSTALW/ty3.aln.gz
%%DATADIR%%/samples/EMBL/AF177870.emb
%%DATADIR%%/samples/EMBL/AL000263.emb
%%DATADIR%%/samples/FASTA/human_T1.fa
%%DATADIR%%/samples/FASTQ/eas.fastq
%%DATADIR%%/samples/GFF/5prime_utr_intron_A20.gff
%%DATADIR%%/samples/GFF/5prime_utr_intron_A21.gff
%%DATADIR%%/samples/Genbank/CVU55762.gb
%%DATADIR%%/samples/Genbank/NC_014267.1.gb
%%DATADIR%%/samples/Genbank/PBR322.gb
%%DATADIR%%/samples/Genbank/murine.gb
%%DATADIR%%/samples/Genbank/sars.gb
%%DATADIR%%/samples/HMM/aligment15900.hmm
%%DATADIR%%/samples/MMDB/1CRN.prt
%%DATADIR%%/samples/MMDB/2JQS.prt
%%DATADIR%%/samples/MSF/HMA.msf
%%DATADIR%%/samples/MSF/lipid8.msf
%%DATADIR%%/samples/MSF/pla2_20.msf
%%DATADIR%%/samples/Newick/COI.nwk
%%DATADIR%%/samples/PDB/1CF7.PDB
%%DATADIR%%/samples/PDB/1CRN.PDB
%%DATADIR%%/samples/PDB/3INS.PDB
%%DATADIR%%/samples/Raw/raw.seq
%%DATADIR%%/samples/SCF/90-JRI-07.scf
%%DATADIR%%/samples/Stockholm/CBS.sto
%%DATADIR%%/samples/Stockholm/UPSK.sto
%%DATADIR%%/samples/Swiss-Prot/D0VTW9.txt
%%DATADIR%%/samples/Swiss-Prot/P01375.txt
%%DATADIR%%/samples/Swiss-Prot/P16152.txt
%%DATADIR%%/sitecon_models/eukaryotic/CEBP_a.sitecon.gz
%%DATADIR%%/sitecon_models/eukaryotic/CEBPall.sitecon.gz
%%DATADIR%%/sitecon_models/eukaryotic/CLOCK.sitecon.gz
%%DATADIR%%/sitecon_models/eukaryotic/CRE.sitecon.gz
%%DATADIR%%/sitecon_models/eukaryotic/E2F1.sitecon.gz
%%DATADIR%%/sitecon_models/eukaryotic/E2F1DP1sel1.sitecon.gz
%%DATADIR%%/sitecon_models/eukaryotic/EGR1.sitecon.gz
%%DATADIR%%/sitecon_models/eukaryotic/Eklf.sitecon.gz
%%DATADIR%%/sitecon_models/eukaryotic/GATA1.sitecon.gz
%%DATADIR%%/sitecon_models/eukaryotic/GATA_ALL.sitecon.gz
%%DATADIR%%/sitecon_models/eukaryotic/Gata2.sitecon.gz
%%DATADIR%%/sitecon_models/eukaryotic/Gata3.sitecon.gz
%%DATADIR%%/sitecon_models/eukaryotic/HMG1.sitecon.gz
%%DATADIR%%/sitecon_models/eukaryotic/HNF1.sitecon.gz
%%DATADIR%%/sitecon_models/eukaryotic/HNF3_4.sitecon.gz
%%DATADIR%%/sitecon_models/eukaryotic/HNF4.sitecon.gz
%%DATADIR%%/sitecon_models/eukaryotic/MYOGsel3.sitecon.gz
%%DATADIR%%/sitecon_models/eukaryotic/MyoD.sitecon.gz
%%DATADIR%%/sitecon_models/eukaryotic/NF1.sitecon.gz
%%DATADIR%%/sitecon_models/eukaryotic/NFATp.sitecon.gz
%%DATADIR%%/sitecon_models/eukaryotic/NFkB_all.sitecon.gz
%%DATADIR%%/sitecon_models/eukaryotic/NFkB_hetero.sitecon.gz
%%DATADIR%%/sitecon_models/eukaryotic/NFkB_homo.sitecon.gz
%%DATADIR%%/sitecon_models/eukaryotic/Nf_e2.sitecon.gz
%%DATADIR%%/sitecon_models/eukaryotic/Nrf2.sitecon.gz
%%DATADIR%%/sitecon_models/eukaryotic/Oct1.sitecon.gz
%%DATADIR%%/sitecon_models/eukaryotic/Oct_all.sitecon.gz
%%DATADIR%%/sitecon_models/eukaryotic/PPRE.sitecon.gz
%%DATADIR%%/sitecon_models/eukaryotic/Pu1.sitecon.gz
%%DATADIR%%/sitecon_models/eukaryotic/SRE_can.sitecon.gz
%%DATADIR%%/sitecon_models/eukaryotic/STAT.sitecon.gz
%%DATADIR%%/sitecon_models/eukaryotic/STAT1.sitecon.gz
%%DATADIR%%/sitecon_models/eukaryotic/TTF1.sitecon.gz
%%DATADIR%%/sitecon_models/eukaryotic/USF.sitecon.gz
%%DATADIR%%/sitecon_models/eukaryotic/cMyc_can.sitecon.gz
%%DATADIR%%/sitecon_models/eukaryotic/er2.sitecon.gz
%%DATADIR%%/sitecon_models/eukaryotic/irf.sitecon.gz
%%DATADIR%%/sitecon_models/eukaryotic/isre.sitecon.gz
%%DATADIR%%/sitecon_models/eukaryotic/nfy.sitecon.gz
%%DATADIR%%/sitecon_models/eukaryotic/p53.sitecon.gz
%%DATADIR%%/sitecon_models/eukaryotic/setCREB.sitecon.gz
%%DATADIR%%/sitecon_models/eukaryotic/setCREBzag.sitecon.gz
%%DATADIR%%/sitecon_models/eukaryotic/srf_all.sitecon.gz
%%DATADIR%%/sitecon_models/eukaryotic/yy1.sitecon.gz
%%DATADIR%%/sitecon_models/prokaryotic/AgaR.sitecon.gz
%%DATADIR%%/sitecon_models/prokaryotic/AraC.sitecon.gz
%%DATADIR%%/sitecon_models/prokaryotic/ArcA.sitecon.gz
%%DATADIR%%/sitecon_models/prokaryotic/ArgR.sitecon.gz
%%DATADIR%%/sitecon_models/prokaryotic/CpxR.sitecon.gz
%%DATADIR%%/sitecon_models/prokaryotic/Crp.sitecon.gz
%%DATADIR%%/sitecon_models/prokaryotic/CysB.sitecon.gz
%%DATADIR%%/sitecon_models/prokaryotic/CytR.sitecon.gz
%%DATADIR%%/sitecon_models/prokaryotic/DeoR.sitecon.gz
%%DATADIR%%/sitecon_models/prokaryotic/DnaA.sitecon.gz
%%DATADIR%%/sitecon_models/prokaryotic/FUR.sitecon.gz
%%DATADIR%%/sitecon_models/prokaryotic/FadR.sitecon.gz
%%DATADIR%%/sitecon_models/prokaryotic/FlhDC.sitecon.gz
%%DATADIR%%/sitecon_models/prokaryotic/Fnr.sitecon.gz
%%DATADIR%%/sitecon_models/prokaryotic/Frur.sitecon.gz
%%DATADIR%%/sitecon_models/prokaryotic/GALR.sitecon.gz
%%DATADIR%%/sitecon_models/prokaryotic/GALS.sitecon.gz
%%DATADIR%%/sitecon_models/prokaryotic/GLPR.sitecon.gz
%%DATADIR%%/sitecon_models/prokaryotic/GNTR.sitecon.gz
%%DATADIR%%/sitecon_models/prokaryotic/HNS.sitecon.gz
%%DATADIR%%/sitecon_models/prokaryotic/ICLR.sitecon.gz
%%DATADIR%%/sitecon_models/prokaryotic/IHF.sitecon.gz
%%DATADIR%%/sitecon_models/prokaryotic/ISCR1.sitecon.gz
%%DATADIR%%/sitecon_models/prokaryotic/ISCR3.sitecon.gz
%%DATADIR%%/sitecon_models/prokaryotic/LEXA.sitecon.gz
%%DATADIR%%/sitecon_models/prokaryotic/Lrp.sitecon.gz
%%DATADIR%%/sitecon_models/prokaryotic/MALT.sitecon.gz
%%DATADIR%%/sitecon_models/prokaryotic/MARA.sitecon.gz
%%DATADIR%%/sitecon_models/prokaryotic/MELR.sitecon.gz
%%DATADIR%%/sitecon_models/prokaryotic/MLC.sitecon.gz
%%DATADIR%%/sitecon_models/prokaryotic/MODE.sitecon.gz
%%DATADIR%%/sitecon_models/prokaryotic/MetJ.sitecon.gz
%%DATADIR%%/sitecon_models/prokaryotic/MetR1.sitecon.gz
%%DATADIR%%/sitecon_models/prokaryotic/NAC.sitecon.gz
%%DATADIR%%/sitecon_models/prokaryotic/NAGC_new2.sitecon.gz
%%DATADIR%%/sitecon_models/prokaryotic/NANR.sitecon.gz
%%DATADIR%%/sitecon_models/prokaryotic/NARL2.sitecon.gz
%%DATADIR%%/sitecon_models/prokaryotic/NARP.sitecon.gz
%%DATADIR%%/sitecon_models/prokaryotic/NTRC.sitecon.gz
%%DATADIR%%/sitecon_models/prokaryotic/NarL.sitecon.gz
%%DATADIR%%/sitecon_models/prokaryotic/OmpR.sitecon.gz
%%DATADIR%%/sitecon_models/prokaryotic/OxyR.sitecon.gz
%%DATADIR%%/sitecon_models/prokaryotic/PHOB.sitecon.gz
%%DATADIR%%/sitecon_models/prokaryotic/PHOP.sitecon.gz
%%DATADIR%%/sitecon_models/prokaryotic/PurR.sitecon.gz
%%DATADIR%%/sitecon_models/prokaryotic/ROB.sitecon.gz
%%DATADIR%%/sitecon_models/prokaryotic/RcsB_1core.sitecon.gz
%%DATADIR%%/sitecon_models/prokaryotic/RcsB_2core.sitecon.gz
%%DATADIR%%/sitecon_models/prokaryotic/Rob2.sitecon.gz
%%DATADIR%%/sitecon_models/prokaryotic/TORR.sitecon.gz
%%DATADIR%%/sitecon_models/prokaryotic/TRPR.sitecon.gz
%%DATADIR%%/sitecon_models/prokaryotic/TyrR.sitecon.gz
%%DATADIR%%/sitecon_models/prokaryotic/fis_new1.sitecon.gz
%%DATADIR%%/sitecon_models/prokaryotic/soxS.sitecon.gz
%%DATADIR%%/snp_scripts/SNPChIPTools.py
%%DATADIR%%/snp_scripts/pdb_uniprot_chain_map.lst.2
%%DATADIR%%/snp_scripts/protstability1d.py
%%DATADIR%%/snp_scripts/protstability3d.py
%%DATADIR%%/snp_scripts/rsnp.py
%%DATADIR%%/snp_scripts/snp2pdbsite.py
%%DATADIR%%/snp_scripts/update_d_db.py
%%DATADIR%%/translations.txt
%%DATADIR%%/weight_matrix/blosum100.txt
%%DATADIR%%/weight_matrix/blosum30.txt
%%DATADIR%%/weight_matrix/blosum35.txt
%%DATADIR%%/weight_matrix/blosum40.txt
%%DATADIR%%/weight_matrix/blosum45.txt
%%DATADIR%%/weight_matrix/blosum50.txt
%%DATADIR%%/weight_matrix/blosum55.txt
%%DATADIR%%/weight_matrix/blosum60.txt
%%DATADIR%%/weight_matrix/blosum62.txt
%%DATADIR%%/weight_matrix/blosum65.txt
%%DATADIR%%/weight_matrix/blosum70.txt
%%DATADIR%%/weight_matrix/blosum75.txt
%%DATADIR%%/weight_matrix/blosum80.txt
%%DATADIR%%/weight_matrix/blosum85.txt
%%DATADIR%%/weight_matrix/blosum90.txt
%%DATADIR%%/weight_matrix/blosumn.txt
%%DATADIR%%/weight_matrix/dayhoff.txt
%%DATADIR%%/weight_matrix/dna.txt
%%DATADIR%%/weight_matrix/gonnet.txt
%%DATADIR%%/weight_matrix/identity.txt
%%DATADIR%%/weight_matrix/match.txt
%%DATADIR%%/weight_matrix/md_10.txt
%%DATADIR%%/weight_matrix/md_20.txt
%%DATADIR%%/weight_matrix/md_40.txt
%%DATADIR%%/weight_matrix/nuc.4.4.txt
%%DATADIR%%/weight_matrix/pam10.txt
%%DATADIR%%/weight_matrix/pam100.txt
%%DATADIR%%/weight_matrix/pam110.txt
%%DATADIR%%/weight_matrix/pam120.cdi.txt
%%DATADIR%%/weight_matrix/pam120.txt
%%DATADIR%%/weight_matrix/pam130.txt
%%DATADIR%%/weight_matrix/pam140.txt
%%DATADIR%%/weight_matrix/pam150.txt
%%DATADIR%%/weight_matrix/pam160.cdi.txt
%%DATADIR%%/weight_matrix/pam160.txt
%%DATADIR%%/weight_matrix/pam170.txt
%%DATADIR%%/weight_matrix/pam180.txt
%%DATADIR%%/weight_matrix/pam190.txt
%%DATADIR%%/weight_matrix/pam20.txt
%%DATADIR%%/weight_matrix/pam200.cdi.txt
%%DATADIR%%/weight_matrix/pam200.txt
%%DATADIR%%/weight_matrix/pam210.txt
%%DATADIR%%/weight_matrix/pam220.txt
%%DATADIR%%/weight_matrix/pam230.txt
%%DATADIR%%/weight_matrix/pam240.txt
%%DATADIR%%/weight_matrix/pam250.cdi.txt
%%DATADIR%%/weight_matrix/pam250.txt
%%DATADIR%%/weight_matrix/pam260.txt
%%DATADIR%%/weight_matrix/pam270.txt
%%DATADIR%%/weight_matrix/pam280.txt
%%DATADIR%%/weight_matrix/pam290.txt
%%DATADIR%%/weight_matrix/pam30.txt
%%DATADIR%%/weight_matrix/pam300.txt
%%DATADIR%%/weight_matrix/pam310.txt
%%DATADIR%%/weight_matrix/pam320.txt
%%DATADIR%%/weight_matrix/pam330.txt
%%DATADIR%%/weight_matrix/pam340.txt
%%DATADIR%%/weight_matrix/pam350.txt
%%DATADIR%%/weight_matrix/pam360.txt
%%DATADIR%%/weight_matrix/pam370.txt
%%DATADIR%%/weight_matrix/pam380.txt
%%DATADIR%%/weight_matrix/pam390.txt
%%DATADIR%%/weight_matrix/pam40.cdi.txt
%%DATADIR%%/weight_matrix/pam40.txt
%%DATADIR%%/weight_matrix/pam400.txt
%%DATADIR%%/weight_matrix/pam410.txt
%%DATADIR%%/weight_matrix/pam420.txt
%%DATADIR%%/weight_matrix/pam430.txt
%%DATADIR%%/weight_matrix/pam440.txt
%%DATADIR%%/weight_matrix/pam450.txt
%%DATADIR%%/weight_matrix/pam460.txt
%%DATADIR%%/weight_matrix/pam470.txt
%%DATADIR%%/weight_matrix/pam480.txt
%%DATADIR%%/weight_matrix/pam490.txt
%%DATADIR%%/weight_matrix/pam50.txt
%%DATADIR%%/weight_matrix/pam500.txt
%%DATADIR%%/weight_matrix/pam60.txt
%%DATADIR%%/weight_matrix/pam70.txt
%%DATADIR%%/weight_matrix/pam80.cdi.txt
%%DATADIR%%/weight_matrix/pam80.txt
%%DATADIR%%/weight_matrix/pam90.txt
%%DATADIR%%/weight_matrix/rna.txt
%%DATADIR%%/weight_matrix/vtml160.txt
%%DATADIR%%/weight_matrix/vtml200.txt
%%DATADIR%%/workflow_samples/Alignment/basic_align.uwl
%%DATADIR%%/workflow_samples/Conversions/faqual2fastq.uwl
%%DATADIR%%/workflow_samples/Conversions/msa2clustal.uwl
%%DATADIR%%/workflow_samples/Conversions/query2alignment.uwl
%%DATADIR%%/workflow_samples/Conversions/seq2gen.uwl
%%DATADIR%%/workflow_samples/Custom elements/casava-fastq-filter.uwl
%%DATADIR%%/workflow_samples/Custom elements/fastq-trimmer.uwl
%%DATADIR%%/workflow_samples/Custom elements/script-dump-sequence-info.uwl
%%DATADIR%%/workflow_samples/Custom elements/script-linkdata-fetch-seq.uwl
%%DATADIR%%/workflow_samples/Custom elements/script-quality-filter.uwl
%%DATADIR%%/workflow_samples/Data marking/annotation_marker.uwl
%%DATADIR%%/workflow_samples/Data marking/length_marker.uwl
%%DATADIR%%/workflow_samples/Data merging/find-substrings.uwl
%%DATADIR%%/workflow_samples/Data merging/merge-sequence.uwl
%%DATADIR%%/workflow_samples/Data merging/tfbs.uwl
%%DATADIR%%/workflow_samples/HMMER/build-test-HMM.uwl
%%DATADIR%%/workflow_samples/HMMER/searchHMM.uwl
%%DATADIR%%/workflow_samples/NGS/call_variants.uwl
%%DATADIR%%/workflow_samples/NGS/cistrome/chip_seq.uwl
%%DATADIR%%/workflow_samples/NGS/cistrome/chip_seq_with_control.uwl
%%DATADIR%%/workflow_samples/NGS/cistrome.uwl
%%DATADIR%%/workflow_samples/NGS/consensus.uwl
%%DATADIR%%/workflow_samples/NGS/extract_transcript_seq.uwl
%%DATADIR%%/workflow_samples/NGS/tuxedo/tuxedo_main.uwl
%%DATADIR%%/workflow_samples/NGS/tuxedo/tuxedo_main_paired.uwl
%%DATADIR%%/workflow_samples/NGS/tuxedo/tuxedo_no_novel_transcr.uwl
%%DATADIR%%/workflow_samples/NGS/tuxedo/tuxedo_no_novel_transcr_paired.uwl
%%DATADIR%%/workflow_samples/NGS/tuxedo/tuxedo_single_dataset.uwl
%%DATADIR%%/workflow_samples/NGS/tuxedo/tuxedo_single_dataset_paired.uwl
%%DATADIR%%/workflow_samples/NGS/tuxedo.uwl
%%DATADIR%%/workflow_samples/Scenarios/extract_consensus.uwl
%%DATADIR%%/workflow_samples/Scenarios/filter_matched.uwl
%%DATADIR%%/workflow_samples/Scenarios/find_sequences.uwl
%%DATADIR%%/workflow_samples/Scenarios/gene_by_gene_report.uwl
%%DATADIR%%/workflow_samples/Scenarios/merge_sequence_annotation.uwl
%%DATADIR%%/workflow_samples/Transcriptomics/SearchTFBS.uwl
%%DATADIR%%/workflow_samples/users/CASAVA FASTQ filter.usa
%%DATADIR%%/workflow_samples/users/Dump sequence info.usa
%%DATADIR%%/workflow_samples/users/FASTQ Trimmer.usa
%%DATADIR%%/workflow_samples/users/LinkData Fetch.usa
%%DATADIR%%/workflow_samples/users/QualityFilter.usa
@dirrm %%DATADIR%%/workflow_samples/users
@dirrm %%DATADIR%%/workflow_samples/Transcriptomics
@dirrm %%DATADIR%%/workflow_samples/Scenarios
@dirrm %%DATADIR%%/workflow_samples/NGS/tuxedo
@dirrm %%DATADIR%%/workflow_samples/NGS/cistrome
@dirrm %%DATADIR%%/workflow_samples/NGS
@dirrm %%DATADIR%%/workflow_samples/HMMER
@dirrm %%DATADIR%%/workflow_samples/Data merging
@dirrm %%DATADIR%%/workflow_samples/Data marking
@dirrm %%DATADIR%%/workflow_samples/Custom elements
@dirrm %%DATADIR%%/workflow_samples/Conversions
@dirrm %%DATADIR%%/workflow_samples/Alignment
@dirrm %%DATADIR%%/workflow_samples
@dirrm %%DATADIR%%/weight_matrix
@dirrm %%DATADIR%%/snp_scripts
@dirrm %%DATADIR%%/sitecon_models/prokaryotic
@dirrm %%DATADIR%%/sitecon_models/eukaryotic
@dirrm %%DATADIR%%/sitecon_models
@dirrm %%DATADIR%%/samples/Swiss-Prot
@dirrm %%DATADIR%%/samples/Stockholm
@dirrm %%DATADIR%%/samples/SCF
@dirrm %%DATADIR%%/samples/Raw
@dirrm %%DATADIR%%/samples/PDB
@dirrm %%DATADIR%%/samples/Newick
@dirrm %%DATADIR%%/samples/MSF
@dirrm %%DATADIR%%/samples/MMDB
@dirrm %%DATADIR%%/samples/HMM
@dirrm %%DATADIR%%/samples/Genbank
@dirrm %%DATADIR%%/samples/GFF
@dirrm %%DATADIR%%/samples/FASTQ
@dirrm %%DATADIR%%/samples/FASTA
@dirrm %%DATADIR%%/samples/EMBL
@dirrm %%DATADIR%%/samples/CLUSTALW
@dirrm %%DATADIR%%/samples/Assembly
@dirrm %%DATADIR%%/samples/ACE
@dirrm %%DATADIR%%/samples/ABIF
@dirrm %%DATADIR%%/samples
@dirrm %%DATADIR%%/query_samples
@dirrm %%DATADIR%%/primer3
@dirrm %%DATADIR%%/position_weight_matrix/UniPROBE/PNAS08
@dirrm %%DATADIR%%/position_weight_matrix/UniPROBE/NBT06
@dirrm %%DATADIR%%/position_weight_matrix/UniPROBE/GR09
@dirrm %%DATADIR%%/position_weight_matrix/UniPROBE/Cell08
@dirrm %%DATADIR%%/position_weight_matrix/UniPROBE
@dirrm %%DATADIR%%/position_weight_matrix/JASPAR/vertebrates
@dirrm %%DATADIR%%/position_weight_matrix/JASPAR/urochordates
@dirrm %%DATADIR%%/position_weight_matrix/JASPAR/plants
@dirrm %%DATADIR%%/position_weight_matrix/JASPAR/nematodes
@dirrm %%DATADIR%%/position_weight_matrix/JASPAR/insects
@dirrm %%DATADIR%%/position_weight_matrix/JASPAR/fungi
@dirrm %%DATADIR%%/position_weight_matrix/JASPAR
@dirrm %%DATADIR%%/position_weight_matrix
%%PORTDOCS%%@dirrm %%DOCSDIR%%
@dirrm %%DATADIR%%/genome_lengths
@dirrm %%DATADIR%%/enzymes
@dirrm %%DATADIR%%/custom_annotations
@dirrm %%DATADIR%%/cmdline
@dirrm %%DATADIR%%/biostruct3d_plugin
@dirrm %%DATADIR%%/back_translation/Yeast
@dirrm %%DATADIR%%/back_translation/Viruses
@dirrm %%DATADIR%%/back_translation/Vertebrates
@dirrm %%DATADIR%%/back_translation/Rodents
@dirrm %%DATADIR%%/back_translation/Primates
@dirrm %%DATADIR%%/back_translation/Plants
@dirrm %%DATADIR%%/back_translation/Mammalia
@dirrm %%DATADIR%%/back_translation/Invertebrates
@dirrm %%DATADIR%%/back_translation/Bacteria
@dirrm %%DATADIR%%/back_translation
@dirrm %%DATADIR%%
@dirrm lib/ugene/plugins
@dirrm lib/ugene
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