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freebsd-ports/biology
History
Dirk Meyer 1fa583c33d - any version for RUN_DEPENDS
2014-09-21 13:44:58 +00:00
..
ariadne
Convert a bunch of EXTRACT_SUFX=... into USES=tar:...
2014-07-29 19:11:51 +00:00
artemis
…
avida
…
babel
Rename biology/ patch-xy patches to reflect the files they modify.
2014-07-28 14:22:16 +00:00
biococoa
Update the default version of GCC in the Ports Collection from GCC 4.7.4
2014-09-10 20:50:31 +00:00
biojava
- add stage support
2014-06-01 10:37:22 +00:00
blat
Put HOME in MAKE_ARGS to handle pverride of HOME in MAKE_ENV from bsd.port.mk
2014-06-25 08:55:55 +00:00
boinc-simap
biology/boinc-simap: Deprecate, project shutting down on 2015-01-01
2014-09-19 23:05:44 +00:00
chemeq
…
clustalw
Multiple ports: reset maintainers
2014-05-26 02:33:38 +00:00
consed
update ports:
2014-08-23 18:04:58 +00:00
crux
Update the default version of GCC in the Ports Collection from GCC 4.7.4
2014-09-10 20:50:31 +00:00
emboss
Remove indefinite articles and trailing periods from COMMENT, plus
2014-06-09 11:21:52 +00:00
fasta
- Add staging support
2014-03-24 09:01:39 +00:00
fasta3
biology/fasta3: Checked new distfile and regenerated distinfo to unbreak
2014-03-02 10:58:50 +00:00
fastdnaml
…
fluctuate
…
garlic
biology/garlic: Stage properly to unbreak
2014-07-17 10:13:06 +00:00
gff2ps
Add staging support
2014-03-23 17:43:41 +00:00
gmap
Fix MASTER_SITES
2014-09-05 09:25:45 +00:00
gperiodic
Add staging support
2014-03-23 18:09:23 +00:00
grappa
…
hmmer
Add DOCS to OPTIONS_DEFINE to ports that check for PORT_OPTIONS:MDOCS.
2014-07-15 14:54:54 +00:00
iolib
- I forgot to svn add a new patch
2014-05-31 18:03:08 +00:00
jalview
…
lagan
…
lamarc
…
libsbml
- Update to 5.10.2
2014-08-10 06:21:53 +00:00
linux-foldingathome
Stagify.
2014-07-06 16:05:34 +00:00
mafft
Convert a bunch of EXTRACT_SUFX=... into USES=tar:...
2014-07-29 19:11:51 +00:00
mapm3
…
migrate
…
molden
Update the default version of GCC in the Ports Collection from GCC 4.7.4
2014-09-10 20:50:31 +00:00
mopac
- Switch to USES=libtool, drop .la files
2014-08-06 16:05:49 +00:00
mrbayes
Fix build on -current by un-clobbering LDFLAGS. Also, don't
2014-08-15 16:37:37 +00:00
mummer
biology/mummer: Use OPSYS with OSVERSION
2014-07-19 22:00:16 +00:00
muscle
Update to 3.8.31.
2014-06-17 21:36:06 +00:00
ncbi-toolkit
Add staging support
2014-03-23 20:50:54 +00:00
njplot
- add stage support
2014-06-01 11:26:39 +00:00
ortep3
Update the default version of GCC in the Ports Collection from GCC 4.7.4
2014-09-10 20:50:31 +00:00
p5-AcePerl
Fix build. Hopefully it doesn't break the app.
2014-08-22 00:33:16 +00:00
p5-Bio-ASN1-EntrezGene
Convert a bunch of EXTRACT_SUFX=... into USES=tar:...
2014-07-29 19:11:51 +00:00
p5-Bio-Das
…
p5-Bio-Das-Lite
…
p5-Bio-GFF3
- Fix PLIST
2014-03-26 14:23:09 +00:00
p5-Bio-Glite
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p5-Bio-Graphics
Really fix.
2014-07-25 23:08:58 +00:00
p5-Bio-MAGETAB
- update to 1.31
2014-05-16 13:33:02 +00:00
p5-Bio-NEXUS
…
p5-Bio-Phylo
…
p5-Bio-SCF
Remove all the bootstrap files (.bs) from the plists.
2014-06-10 12:14:12 +00:00
p5-bioperl
biology/p5-bioperl: fix pkg-descr sidenote link
2014-08-04 04:32:38 +00:00
p5-bioperl-run
biology/p5-bioperl-run: 1.6.1 -> 1.6.901, unbreak, stagify
2014-08-04 08:54:10 +00:00
paml
Convert a bunch of EXTRACT_SUFX=... into USES=tar:...
2014-07-29 19:11:51 +00:00
phrap
update ports:
2014-08-23 18:04:58 +00:00
phred
update ports:
2014-08-23 18:04:58 +00:00
phylip
The FreeBSD x11@ and graphics team proudly presents
2014-04-16 18:28:47 +00:00
phyml
…
platon
Update the default version of GCC in the Ports Collection from GCC 4.7.4
2014-09-10 20:50:31 +00:00
plink
Update the default version of GCC in the Ports Collection from GCC 4.7.4
2014-09-10 20:50:31 +00:00
plinkseq
- Switch to USES=libtool, drop .la files
2014-07-22 22:12:15 +00:00
povchem
Rename biology/ patch-xy patches to reflect the files they modify.
2014-07-28 14:22:16 +00:00
primer3
Quote ${CC} and similar variables in MAKE_ARGS.
2014-05-20 19:32:39 +00:00
protomol
Update the default version of GCC in the Ports Collection from GCC 4.7.4
2014-09-10 20:50:31 +00:00
psi88
Update the default version of GCC in the Ports Collection from GCC 4.7.4
2014-09-10 20:50:31 +00:00
py-biopython
Update the default version of GCC in the Ports Collection from GCC 4.7.4
2014-09-10 20:50:31 +00:00
pycogent
Update the default version of GCC in the Ports Collection from GCC 4.7.4
2014-09-10 20:50:31 +00:00
pyfasta
Update the default version of GCC in the Ports Collection from GCC 4.7.4
2014-09-10 20:50:31 +00:00
python-nexus
Remove indefinite articles and trailing periods from COMMENT, plus
2014-06-09 11:21:52 +00:00
recombine
…
ruby-bio
- any version for RUN_DEPENDS
2014-09-21 13:44:58 +00:00
seaview
Update the default version of GCC in the Ports Collection from GCC 4.7.4
2014-09-10 20:50:31 +00:00
seqan
Update the default version of GCC in the Ports Collection from GCC 4.7.4
2014-09-10 20:50:31 +00:00
seqio
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seqtools
USES=execinfo
2014-08-04 23:06:21 +00:00
sim4
Support staging
2014-02-16 11:43:07 +00:00
ssaha
biology/ssaha: undeprecate, this port fetches and builds fine.
2014-03-09 09:39:50 +00:00
t_coffee
Update the default version of GCC in the Ports Collection from GCC 4.7.4
2014-09-10 20:50:31 +00:00
tinker
Update the default version of GCC in the Ports Collection from GCC 4.7.4
2014-09-10 20:50:31 +00:00
treepuzzle
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treeviewx
Update the default version of GCC in the Ports Collection from GCC 4.7.4
2014-09-10 20:50:31 +00:00
tRNAscan-SE
Convert a bunch of EXTRACT_SUFX=... into USES=tar:...
2014-07-29 19:11:51 +00:00
ugene
Update the default version of GCC in the Ports Collection from GCC 4.7.4
2014-09-10 20:50:31 +00:00
velvet
Convert a bunch of EXTRACT_SUFX=... into USES=tar:...
2014-07-29 19:11:51 +00:00
wise
- Add staging support
2014-03-24 10:46:35 +00:00
xmolwt
devel/glib12 x11-toolkits/gtk12:
2014-09-13 15:11:27 +00:00
Makefile
Second run at cleaning out non staged ports without pending PR
2014-09-02 12:45:01 +00:00