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sequences. It stands for Sequence Search and Alignment by Hashing Algorithm. It achieves its fast search speed by converting sequence information into a `hash table' data structure, which can then be searched very rapidly for matches. WWW: http://www.sanger.ac.uk/Software/analysis/SSAHA/ PR: ports/124525 Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar> Approved by: gabor (mentor, implicit)
12 lines
489 B
Plaintext
12 lines
489 B
Plaintext
SSAHA is a software tool for very fast matching and alignment of DNA
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sequences. It stands for Sequence Search and Alignment by Hashing
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Algorithm. It achieves its fast search speed by converting sequence
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information into a `hash table' data structure, which can then be
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searched very rapidly for matches.
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SSAHA: a fast search method for large DNA databases (2001).
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Ning Z, Cox AJ, Mullikin JC. Genome Res. 11: 1725-9.
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PMID: 11591649
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WWW: http://www.sanger.ac.uk/Software/analysis/SSAHA/
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