mirror of
https://git.FreeBSD.org/ports.git
synced 2024-11-27 00:57:50 +00:00
2317 lines
77 KiB
Plaintext
2317 lines
77 KiB
Plaintext
bin/aaindexextract
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bin/abiview
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bin/acdc
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bin/acdgalaxy
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bin/acdlog
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bin/acdpretty
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bin/acdtable
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bin/acdtrace
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bin/acdvalid
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bin/aligncopy
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bin/aligncopypair
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bin/antigenic
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bin/assemblyget
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bin/backtranambig
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bin/backtranseq
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bin/banana
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bin/biosed
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bin/btwisted
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bin/cachedas
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bin/cachedbfetch
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bin/cacheebeyesearch
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bin/cacheensembl
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bin/cai
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bin/chaos
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bin/charge
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bin/checktrans
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bin/chips
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bin/cirdna
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bin/codcmp
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bin/codcopy
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bin/coderet
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bin/compseq
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bin/cons
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bin/consambig
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bin/cpgplot
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bin/cpgreport
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bin/cusp
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bin/cutgextract
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bin/cutseq
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bin/dan
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bin/dbiblast
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bin/dbifasta
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bin/dbiflat
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bin/dbigcg
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bin/dbtell
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bin/dbxcompress
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bin/dbxedam
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bin/dbxfasta
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bin/dbxflat
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bin/dbxgcg
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bin/dbxobo
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bin/dbxreport
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bin/dbxresource
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bin/dbxstat
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bin/dbxtax
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bin/dbxuncompress
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bin/degapseq
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bin/density
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bin/descseq
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bin/diffseq
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bin/distmat
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bin/dotmatcher
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bin/dotpath
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bin/dottup
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bin/dreg
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bin/drfinddata
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bin/drfindformat
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bin/drfindid
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bin/drfindresource
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bin/drget
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bin/drtext
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bin/edamdef
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bin/edamhasinput
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bin/edamhasoutput
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bin/edamisformat
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bin/edamisid
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bin/edamname
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bin/edialign
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bin/einverted
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bin/embossdata
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bin/embossupdate
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bin/embossversion
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bin/emma
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bin/emowse
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bin/entret
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bin/epestfind
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bin/eprimer3
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bin/eprimer32
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bin/equicktandem
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bin/est2genome
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bin/etandem
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bin/extractalign
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bin/extractfeat
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bin/extractseq
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bin/featcopy
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bin/featmerge
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bin/featreport
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bin/feattext
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bin/findkm
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bin/freak
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bin/fuzznuc
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bin/fuzzpro
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bin/fuzztran
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bin/garnier
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bin/geecee
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bin/getorf
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bin/godef
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bin/goname
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bin/helixturnhelix
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bin/hmoment
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bin/iep
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bin/infoalign
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bin/infoassembly
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bin/infobase
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bin/inforesidue
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bin/infoseq
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bin/isochore
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bin/jaspextract
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bin/jaspscan
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bin/jembossctl
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bin/lindna
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bin/listor
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bin/makenucseq
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bin/makeprotseq
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bin/marscan
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bin/maskambignuc
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bin/maskambigprot
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bin/maskfeat
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bin/maskseq
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bin/matcher
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bin/megamerger
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bin/merger
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bin/msbar
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bin/mwcontam
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bin/mwfilter
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bin/needle
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bin/needleall
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bin/newcpgreport
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bin/newcpgseek
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bin/newseq
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bin/nohtml
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bin/noreturn
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bin/nospace
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bin/notab
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bin/notseq
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bin/nthseq
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bin/nthseqset
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bin/octanol
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bin/oddcomp
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bin/ontocount
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bin/ontoget
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bin/ontogetcommon
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bin/ontogetdown
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bin/ontogetobsolete
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bin/ontogetroot
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bin/ontogetsibs
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bin/ontogetup
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bin/ontoisobsolete
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bin/ontotext
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bin/palindrome
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bin/pasteseq
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bin/patmatdb
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bin/patmatmotifs
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bin/pepcoil
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bin/pepdigest
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bin/pepinfo
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bin/pepnet
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bin/pepstats
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bin/pepwheel
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bin/pepwindow
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bin/pepwindowall
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bin/plotcon
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bin/plotorf
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bin/polydot
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bin/preg
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bin/prettyplot
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bin/prettyseq
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bin/primersearch
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bin/printsextract
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bin/profit
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bin/prophecy
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bin/prophet
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bin/prosextract
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bin/pscan
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bin/psiphi
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bin/rebaseextract
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bin/recoder
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bin/redata
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bin/refseqget
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bin/remap
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bin/restover
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bin/restrict
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bin/revseq
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bin/runJemboss.sh
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bin/seealso
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bin/seqcount
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bin/seqmatchall
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bin/seqret
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bin/seqretsetall
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bin/seqretsplit
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bin/seqxref
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bin/seqxrefget
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bin/servertell
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bin/showalign
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bin/showdb
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bin/showfeat
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bin/showorf
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bin/showpep
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bin/showserver
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bin/showseq
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bin/shuffleseq
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bin/sigcleave
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bin/silent
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bin/sirna
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bin/sixpack
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bin/sizeseq
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bin/skipredundant
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bin/skipseq
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bin/splitsource
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bin/splitter
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bin/stretcher
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bin/stssearch
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bin/supermatcher
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bin/syco
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bin/taxget
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bin/taxgetdown
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bin/taxgetrank
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bin/taxgetspecies
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bin/taxgetup
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bin/tcode
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bin/textget
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bin/textsearch
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bin/tfextract
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bin/tfm
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bin/tfscan
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bin/tmap
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bin/tranalign
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bin/transeq
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bin/trimest
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bin/trimseq
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bin/trimspace
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bin/twofeat
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bin/union
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bin/urlget
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bin/variationget
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bin/vectorstrip
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bin/water
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bin/whichdb
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bin/wobble
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bin/wordcount
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bin/wordfinder
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bin/wordmatch
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bin/wossdata
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bin/wossinput
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bin/wossname
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bin/wossoperation
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bin/wossoutput
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bin/wossparam
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bin/wosstopic
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bin/xmlget
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bin/xmltext
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bin/yank
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include/ajacd.h
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include/ajalign.h
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include/ajarch.h
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include/ajarr.h
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include/ajassem.h
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include/ajassemdata.h
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include/ajassemdb.h
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include/ajassemread.h
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include/ajassemwrite.h
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include/ajassert.h
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include/ajax.h
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include/ajbamindex.h
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include/ajbase.h
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include/ajcall.h
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include/ajcigar.h
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include/ajcod.h
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include/ajdan.h
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include/ajdas.h
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include/ajdefine.h
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include/ajdmx.h
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include/ajdom.h
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include/ajdomain.h
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include/ajexcept.h
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include/ajfeat.h
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include/ajfeatdata.h
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include/ajfeatdb.h
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include/ajfeatread.h
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include/ajfeatwrite.h
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include/ajfile.h
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include/ajfiledata.h
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include/ajfileio.h
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include/ajfmt.h
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include/ajftp.h
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include/ajgraph.h
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include/ajgraphstruct.h
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include/ajhist.h
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include/ajhttp.h
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include/ajindex.h
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include/ajjava.h
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include/ajlib.h
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include/ajlist.h
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include/ajmart.h
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include/ajmath.h
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include/ajmatrices.h
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include/ajmem.h
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include/ajmess.h
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include/ajnam.h
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include/ajnexus.h
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include/ajobo.h
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include/ajobodata.h
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include/ajobodb.h
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include/ajoboread.h
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include/ajobowrite.h
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include/ajpat.h
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include/ajpdb.h
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include/ajpdbio.h
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include/ajphylo.h
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include/ajquery.h
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include/ajquerydata.h
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include/ajrange.h
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include/ajrefseq.h
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include/ajrefseqdata.h
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include/ajrefseqdb.h
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include/ajrefseqread.h
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include/ajrefseqwrite.h
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include/ajreg.h
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include/ajreport.h
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include/ajresource.h
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include/ajresourcedata.h
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include/ajresourcedb.h
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include/ajresourceread.h
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include/ajresourcewrite.h
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include/ajseq.h
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include/ajseqabi.h
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include/ajseqbam.h
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include/ajseqdata.h
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include/ajseqdb.h
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include/ajseqread.h
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include/ajseqtype.h
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include/ajseqwrite.h
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include/ajsoap.h
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include/ajsort.h
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include/ajsql.h
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include/ajstr.h
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include/ajsys.h
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include/ajtable.h
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include/ajtagval.h
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include/ajtax.h
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include/ajtaxdata.h
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include/ajtaxdb.h
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include/ajtaxread.h
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include/ajtaxwrite.h
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include/ajtext.h
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include/ajtextdata.h
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include/ajtextdb.h
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include/ajtextread.h
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include/ajtextwrite.h
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include/ajtime.h
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include/ajtranslate.h
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include/ajtree.h
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include/ajurl.h
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include/ajurldata.h
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include/ajurldb.h
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include/ajurlread.h
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include/ajurlwrite.h
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include/ajutil.h
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include/ajvar.h
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include/ajvarbcf.h
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include/ajvardata.h
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include/ajvardb.h
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include/ajvarread.h
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include/ajvarwrite.h
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include/ajvector.h
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include/ajxml.h
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include/ajxmldata.h
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include/ajxmldb.h
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include/ajxmlread.h
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include/ajxmlwrite.h
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include/eexpat/ascii.h
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include/eexpat/asciitab.h
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include/eexpat/expat.h
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include/eexpat/expat_config.h
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include/eexpat/expat_external.h
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include/eexpat/expatemboss.h
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include/eexpat/iasciitab.h
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include/eexpat/internal.h
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include/eexpat/latin1tab.h
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include/eexpat/nametab.h
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include/eexpat/utf8tab.h
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include/eexpat/xmlrole.h
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include/eexpat/xmltok.h
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include/eexpat/xmltok_impl.h
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include/embaln.h
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include/embcom.h
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include/embcons.h
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include/embdata.h
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include/embdbi.h
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include/embdmx.h
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include/embdomain.h
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include/embest.h
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include/embexit.h
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include/embgroup.h
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include/embiep.h
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include/embindex.h
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include/embinit.h
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include/embmat.h
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include/embmisc.h
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include/embmol.h
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include/embnmer.h
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include/emboss.h
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include/embpat.h
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include/embpatlist.h
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include/embpdb.h
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include/embprop.h
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include/embread.h
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include/embshow.h
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include/embsig.h
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include/embword.h
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include/ensalign.h
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include/ensanalysis.h
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include/ensassemblyexception.h
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include/ensassembly.h
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include/ensassemblymapper.h
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include/ensattribute.h
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include/ensbaseadaptor.h
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include/enscache.h
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include/enscoordsystem.h
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include/ensdatabaseadaptor.h
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include/ensdatabaseconnection.h
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include/ensdatabaseentry.h
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include/ensdata.h
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include/ensdensity.h
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include/ensditag.h
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include/ensembl.h
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include/ensexon.h
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include/ensexternaldatabase.h
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include/ensfeature.h
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include/ensgene.h
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include/ensgvallele.h
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include/ensgvattribute.h
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include/ensgvbaseadaptor.h
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include/ensgvdatabaseadaptor.h
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include/ensgvdata.h
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include/ensgvgenotype.h
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include/ensgvindividual.h
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include/ensgvpopulation.h
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include/ensgvsample.h
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include/ensgvsource.h
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include/ensgvsynonym.h
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include/ensgvvariation.h
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include/ensintron.h
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include/enskaryotype.h
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include/ensmapper.h
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include/ensmarker.h
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include/ensmetacoordinate.h
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include/ensmetainformation.h
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include/ensmiscellaneous.h
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include/ensontology.h
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include/ensoperon.h
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include/ensprediction.h
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include/ensprojectionsegment.h
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include/ensprotein.h
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include/ensqcalignment.h
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include/ensqcdasfeature.h
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include/ensqcdatabase.h
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include/ensqc.h
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include/ensqcsequence.h
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include/ensqcsubmission.h
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include/ensqcvariation.h
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include/ensregistry.h
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include/ensrepeat.h
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include/ensseqregion.h
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include/enssequence.h
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include/enssequenceedit.h
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include/enssimple.h
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include/ensslice.h
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include/enssoftware.h
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include/ensstorable.h
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include/enstable.h
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include/enstranslation.h
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include/enstranscript.h
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include/ensutility.h
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include/ensvariation.h
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include/epcre/pcre.h
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include/epcre/pcre_config.h
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include/epcre/pcre_internal.h
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include/epcre/pcre_printint.src
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include/epcre/pcreemboss.h
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include/epcre/pcreposix.h
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include/epcre/ucp.h
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include/eplplot/disptab.h
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include/eplplot/drivers.h
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include/eplplot/metadefs.h
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include/eplplot/pdf.h
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include/eplplot/plConfig.h
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include/eplplot/plDevs.h
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include/eplplot/plcore.h
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include/eplplot/pldebug.h
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include/eplplot/pldll.h
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include/eplplot/plevent.h
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include/eplplot/plfci-type1.h
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include/eplplot/plhershey-unicode.h
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include/eplplot/plplot.h
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include/eplplot/plplotP.h
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include/eplplot/plstrm.h
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include/eplplot/plunicode-type1.h
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include/eplplot/plxwd.h
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include/eplplot/ps.h
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include/ezlib/crc32.h
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include/ezlib/deflate.h
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include/ezlib/gzguts.h
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include/ezlib/inffast.h
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include/ezlib/inffixed.h
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include/ezlib/inflate.h
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include/ezlib/inftrees.h
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include/ezlib/trees.h
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include/ezlib/zconf.h
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include/ezlib/zlib.h
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include/ezlib/zlibemboss.h
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include/ezlib/zutil.h
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lib/libacd.a
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lib/libacd.so
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lib/libacd.so.6
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lib/libacd.so.6.0.5
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lib/libajax.a
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lib/libajax.so
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lib/libajax.so.6
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lib/libajax.so.6.0.5
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lib/libajaxdb.a
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lib/libajaxdb.so
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lib/libajaxdb.so.6
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lib/libajaxdb.so.6.0.5
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lib/libajaxg.a
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lib/libajaxg.so
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lib/libajaxg.so.6
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lib/libajaxg.so.6.0.5
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lib/libeexpat.a
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lib/libeexpat.so
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lib/libeexpat.so.1
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lib/libeexpat.so.1.1.0
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lib/libensembl.a
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lib/libensembl.so
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lib/libensembl.so.6
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lib/libensembl.so.6.0.5
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lib/libepcre.a
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lib/libepcre.so
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lib/libepcre.so.7
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lib/libepcre.so.7.0.9
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lib/libeplplot.a
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lib/libeplplot.so
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lib/libeplplot.so.3
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lib/libeplplot.so.3.2.7
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lib/libezlib.a
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lib/libezlib.so
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lib/libezlib.so.1
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lib/libezlib.so.1.1.0
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lib/libnucleus.a
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lib/libnucleus.so
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lib/libnucleus.so.6
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lib/libnucleus.so.6.0.5
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%%DATADIR%%/acd/aaindexextract.acd
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%%DATADIR%%/acd/abiview.acd
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%%DATADIR%%/data/CODONS/Efmdvpolyp.cut
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%%DATADIR%%/data/CODONS/Encr.cut
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%%DATADIR%%/data/CODONS/Epot.cut
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%%DATADIR%%/data/CODONS/Eppu.cut
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%%DATADIR%%/data/CODONS/Eprovu.cut
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%%DATADIR%%/data/CODONS/Epse.cut
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%%DATADIR%%/data/CODONS/Epseae.cut
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%%DATADIR%%/data/CODONS/Epsepu.cut
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%%DATADIR%%/data/CODONS/Epsesm.cut
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%%DATADIR%%/data/CODONS/Epsy.cut
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%%DATADIR%%/data/CODONS/Epvu.cut
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%%DATADIR%%/data/CODONS/Erab.cut
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%%DATADIR%%/data/CODONS/Erabbit.cut
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%%DATADIR%%/data/CODONS/Erabit.cut
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%%DATADIR%%/data/CODONS/Erabsp.cut
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%%DATADIR%%/data/CODONS/Erat.cut
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%%DATADIR%%/data/CODONS/Eratsp.cut
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%%DATADIR%%/data/CODONS/Erca.cut
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%%DATADIR%%/data/CODONS/Erhile.cut
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%%DATADIR%%/data/CODONS/Erhime.cut
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%%DATADIR%%/data/CODONS/Erhm.cut
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%%DATADIR%%/data/CODONS/Erhoca.cut
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%%DATADIR%%/data/CODONS/Erhosh.cut
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%%DATADIR%%/data/CODONS/Eric.cut
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%%DATADIR%%/data/CODONS/Erle.cut
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%%DATADIR%%/data/CODONS/Esau.cut
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%%DATADIR%%/data/CODONS/Eschpo.cut
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%%DATADIR%%/data/CODONS/Eschpo_cai.cut
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%%DATADIR%%/data/CODONS/Eschpo_high.cut
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%%DATADIR%%/data/CODONS/Estrpn.cut
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%%DATADIR%%/data/CODONS/Esty.cut
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%%DATADIR%%/data/CODONS/Esus.cut
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%%DATADIR%%/data/CODONS/Esv40.cut
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%%DATADIR%%/data/CODONS/Esynco.cut
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%%DATADIR%%/data/CODONS/Eter.cut
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%%DATADIR%%/data/CODONS/Etob.cut
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%%DATADIR%%/data/CODONS/Etobac.cut
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%%DATADIR%%/data/CODONS/Etobac_chl.cut
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%%DATADIR%%/data/CODONS/Evco.cut
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%%DATADIR%%/data/CODONS/Ewheat.cut
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%%DATADIR%%/data/CODONS/Exel.cut
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%%DATADIR%%/data/CODONS/Exenla.cut
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%%DATADIR%%/data/CODONS/Exenopus.cut
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%%DATADIR%%/data/CODONS/Eyeast.cut
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%%DATADIR%%/data/CODONS/Eyeast_cai.cut
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%%DATADIR%%/data/CODONS/Ezebrafish.cut
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%%DATADIR%%/data/DRCAT.dat
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%%DATADIR%%/data/EBLOSUM30
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%%DATADIR%%/data/EDAM.obo
|
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%%DATADIR%%/data/EDNAFULL
|
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|
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%%DATADIR%%/data/EDNASIMPLE
|
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%%DATADIR%%/data/EGC.0
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%%DATADIR%%/data/EGC.10
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%%DATADIR%%/data/EGC.index
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%%DATADIR%%/data/EGC.txt
|
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%%DATADIR%%/data/ENUC.4.2
|
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%%DATADIR%%/data/ENUC.4.4
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%%DATADIR%%/data/EPAM10
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%%DATADIR%%/data/EPAM100
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%%DATADIR%%/data/EPAM110
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%%DATADIR%%/data/Eaa_acc_surface.dat
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%%DATADIR%%/data/Eaa_hydropathy.dat
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%%DATADIR%%/data/Eaa_properties.dat
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%%DATADIR%%/data/Eamino.dat
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%%DATADIR%%/data/Eangles.dat
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%%DATADIR%%/data/Eangles_tri.dat
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%%DATADIR%%/data/Eantigenic.dat
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%%DATADIR%%/data/Ebases.iub
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%%DATADIR%%/data/Edayhoff.freq
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%%DATADIR%%/data/Edna.melt
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%%DATADIR%%/data/Eembl.ior
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%%DATADIR%%/data/Eenergy.dat
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%%DATADIR%%/data/Efeatures.embl
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%%DATADIR%%/data/Efeatures.emboss
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%%DATADIR%%/data/Efeatures.gff2
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%%DATADIR%%/data/Efeatures.gff2protein
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%%DATADIR%%/data/Efeatures.gff3
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%%DATADIR%%/data/Efeatures.gff3protein
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%%DATADIR%%/data/Efeatures.pir
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%%DATADIR%%/data/Efeatures.refseqp
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%%DATADIR%%/data/Efeatures.protein
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%%DATADIR%%/data/Efeatures.swiss
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%%DATADIR%%/data/Efreqs.dat
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%%DATADIR%%/data/Ehet.dat
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%%DATADIR%%/data/Ehth.dat
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%%DATADIR%%/data/Ehth87.dat
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%%DATADIR%%/data/Emass.dat
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%%DATADIR%%/data/Emassmod.dat
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%%DATADIR%%/data/Ememe.dat
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%%DATADIR%%/data/Emethylsites.dat
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%%DATADIR%%/data/Emolwt.dat
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%%DATADIR%%/data/Emwfilter.dat
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%%DATADIR%%/data/Enakai.dat
|
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%%DATADIR%%/data/EnsemblAliases.dat
|
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%%DATADIR%%/data/EnsemblIdentifiers.dat
|
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%%DATADIR%%/data/Epepcoil.dat
|
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%%DATADIR%%/data/Epk.dat
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%%DATADIR%%/data/Epkexpasy.dat
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%%DATADIR%%/data/Epprofile
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%%DATADIR%%/data/Eprior1.plib
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%%DATADIR%%/data/Eprior30.plib
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%%DATADIR%%/data/Eresidues.iub
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%%DATADIR%%/data/Erna.melt
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%%DATADIR%%/data/Esig.euk
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%%DATADIR%%/data/Esig.pro
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%%DATADIR%%/data/Etags.embl
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%%DATADIR%%/data/Etags.emboss
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%%DATADIR%%/data/Etags.gff2
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%%DATADIR%%/data/Etags.gff2protein
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%%DATADIR%%/data/Etags.gff3
|
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%%DATADIR%%/data/Etags.gff3protein
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%%DATADIR%%/data/Etags.pir
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%%DATADIR%%/data/Etags.protein
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%%DATADIR%%/data/Etags.refseqp
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%%DATADIR%%/data/Etags.swiss
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%%DATADIR%%/data/Etcode.dat
|
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%%DATADIR%%/data/Evdw.dat
|
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%%DATADIR%%/data/Ewhite-wimley.dat
|
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%%DATADIR%%/data/JASPAR_CNE/dummyfile
|
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%%DATADIR%%/data/JASPAR_CORE/dummyfile
|
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%%DATADIR%%/data/JASPAR_FAM/dummyfile
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%%DATADIR%%/data/JASPAR_PBM/dummyfile
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%%DATADIR%%/data/JASPAR_PBM_HLH/dummyfile
|
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%%DATADIR%%/data/JASPAR_PBM_HOMEO/dummyfile
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%%DATADIR%%/data/JASPAR_PHYLOFACTS/dummyfile
|
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%%DATADIR%%/data/JASPAR_POLII/dummyfile
|
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%%DATADIR%%/data/JASPAR_SPLICE/dummyfile
|
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%%DATADIR%%/data/Matrices.nucleotide
|
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%%DATADIR%%/data/Matrices.protein
|
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%%DATADIR%%/data/Matrices.proteinstructure
|
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%%DATADIR%%/data/OBO/chebi.obo
|
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%%DATADIR%%/data/OBO/eco.obo
|
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%%DATADIR%%/data/OBO/go.obo
|
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%%DATADIR%%/data/OBO/pathway.obo
|
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%%DATADIR%%/data/OBO/ro.obo
|
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%%DATADIR%%/data/OBO/so.obo
|
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%%DATADIR%%/data/OBO/software.obo
|
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%%DATADIR%%/data/PRINTS/dummyfile
|
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%%DATADIR%%/data/PROSITE/dummyfile
|
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%%DATADIR%%/data/REBASE/embossre.equ
|
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%%DATADIR%%/data/SSSUB
|
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%%DATADIR%%/data/TAXONOMY/division.dmp
|
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%%DATADIR%%/data/TAXONOMY/gencode.dmp
|
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%%DATADIR%%/data/TAXONOMY/merged.dmp
|
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%%DATADIR%%/data/TAXONOMY/names.dmp
|
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%%DATADIR%%/data/TAXONOMY/nodes.dmp
|
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%%DATADIR%%/data/edialignmat
|
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%%DATADIR%%/data/tp400_dna
|
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%%DATADIR%%/data/tp400_prot
|
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%%DATADIR%%/data/tp400_trans
|
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%%DATADIR%%/emboss.default.template
|
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%%DATADIR%%/emboss.standard
|
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%%DATADIR%%/index/chebi.ent
|
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%%DATADIR%%/index/chebi.pxac
|
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%%DATADIR%%/index/chebi.pxde
|
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%%DATADIR%%/index/chebi.pxid
|
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%%DATADIR%%/index/chebi.pxis
|
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%%DATADIR%%/index/chebi.pxnm
|
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%%DATADIR%%/index/chebi.pxns
|
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%%DATADIR%%/index/chebi.xac
|
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%%DATADIR%%/index/chebi.xde
|
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%%DATADIR%%/index/chebi.xid
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%%DATADIR%%/index/chebi.xis
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