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freebsd-ports/biology/clustalw/files/patch-ae
Johann Visagie 5e52a21fed - Fix certain mistakes in FreeBSD patches
- Bump PORTREVISION
- Poroblem originally reported by Fernan Aguero <fernan@iib.unsam.edu.ar> on
  FreeBSD-bio list

PR:		36169
Submitted by:	David A. Bader <dbader@eece.unm.edu> (MAINTAINER)
2002-03-22 08:23:22 +00:00

139 lines
4.3 KiB
Plaintext

--- amenu.c-orig Tue Feb 6 03:15:01 2001
+++ amenu.c Thu Mar 21 10:19:02 2002
@@ -13,7 +13,8 @@
static jmp_buf jmpbuf;
#ifndef VMS
#ifndef AIX
-#define BADSIG (void (*)())-1
+/* #define BADSIG (void (*)())-1 */
+#define BADSIG SIG_ERR
#endif
#endif
@@ -176,7 +177,7 @@
fprintf(stdout," H. HELP\n");
fprintf(stdout," X. EXIT (leave program)\n\n\n");
- getstr("Your choice",lin1);
+ getstr("Your choice",lin1,MAXLINE);
switch(toupper(*lin1)) {
case '1': seq_input(FALSE);
@@ -260,7 +261,7 @@
fprintf(stdout," H. HELP\n");
fprintf(stdout," or press [RETURN] to go back to main menu\n\n\n");
- getstr("Your choice",lin1);
+ getstr("Your choice",lin1,MAXLINE);
if(*lin1 == EOS) return;
switch(toupper(*lin1))
@@ -353,7 +354,7 @@
fprintf(stdout," H. HELP\n");
fprintf(stdout," or press [RETURN] to go back to main menu\n\n\n");
- getstr("Your choice",lin1);
+ getstr("Your choice",lin1,MAXLINE);
if(*lin1 == EOS) return;
switch(toupper(*lin1))
@@ -449,7 +450,7 @@
fprintf(stdout,"\n\n");
fprintf(stdout," H. HELP\n\n\n");
- getstr("Enter number (or [RETURN] to exit)",lin2);
+ getstr("Enter number (or [RETURN] to exit)",lin2,MAXLINE);
if( *lin2 == EOS) {
return;
}
@@ -525,7 +526,7 @@
fprintf(stdout,"--\n");
- getstr("\n\nEnter number (or [RETURN] to exit)",lin2);
+ getstr("\n\nEnter number (or [RETURN] to exit)",lin2,MAXLINE);
if(*lin2 == EOS) return(output_struct_penalties);
switch(toupper(*lin2))
@@ -594,7 +595,7 @@
fprintf(stdout," H. HELP\n");
fprintf(stdout," or press [RETURN] to go back to main menu\n\n\n");
- getstr("Your choice",lin1);
+ getstr("Your choice",lin1,MAXLINE);
if(*lin1 == EOS) return;
switch(toupper(*lin1))
@@ -669,7 +670,7 @@
fprintf(stdout,"\n");
fprintf(stdout," H. HELP\n\n\n");
- getstr("Enter number (or [RETURN] to exit)",lin2);
+ getstr("Enter number (or [RETURN] to exit)",lin2,MAXLINE);
if(*lin2 == EOS) return;
switch(toupper(*lin2)) {
@@ -752,7 +753,7 @@
fprintf(stdout,"\n");
fprintf(stdout," H. HELP\n\n\n");
- getstr("Enter number (or [RETURN] to exit)",lin2);
+ getstr("Enter number (or [RETURN] to exit)",lin2,MAXLINE);
if(*lin2 == EOS) return;
switch(toupper(*lin2)) {
@@ -886,7 +887,7 @@
fprintf(stdout," H. HELP\n\n\n");
- getstr("Enter number (or [RETURN] to exit)",lin2);
+ getstr("Enter number (or [RETURN] to exit)",lin2,MAXLINE);
if( *lin2 == EOS) {
if(dnaflag) {
dna_pw_go_penalty = pw_go_penalty;
@@ -1008,7 +1009,7 @@
fprintf(stdout," 8. Protein Gap Parameters\n\n");
fprintf(stdout," H. HELP\n\n\n");
- getstr("Enter number (or [RETURN] to exit)",lin2);
+ getstr("Enter number (or [RETURN] to exit)",lin2,MAXLINE);
if(*lin2 == EOS) {
if(dnaflag) {
@@ -1101,7 +1102,7 @@
fprintf(stdout," 5. Toggle End Gap Separation :%s\n\n",(!use_endgaps) ? "OFF" : "ON");
fprintf(stdout," H. HELP\n\n\n");
- getstr("Enter number (or [RETURN] to exit)",lin2);
+ getstr("Enter number (or [RETURN] to exit)",lin2,MAXLINE);
if(*lin2 == EOS) return;
@@ -1115,7 +1116,7 @@
case '3':
fprintf(stdout,"Hydrophilic Residues Currently: %s\n",hyd_residues);
- getstr("Enter residues (or [RETURN] to quit)",lin1);
+ getstr("Enter residues (or [RETURN] to quit)",lin1,MAXLINE);
if (*lin1 != EOS) {
for (i=0;i<strlen(hyd_residues) && i<26;i++) {
c = lin1[i];
@@ -1167,7 +1168,7 @@
fprintf(stdout,"--\n");
- getstr("\n\nEnter number (or [RETURN] to exit)",lin2);
+ getstr("\n\nEnter number (or [RETURN] to exit)",lin2,MAXLINE);
if(*lin2 == EOS) return(matn);
i=toupper(*lin2)-'0';
@@ -1202,7 +1203,7 @@
fprintf(stdout,"\n%s\n",title);
strcpy(line,prompt);
strcat(line, "(y/n) ? [y]");
- getstr(line,lin2);
+ getstr(line,lin2,80);
if ((*lin2 != 'n') && (*lin2 != 'N'))
return('y');
else