John Marino 2ffeafe8fe science/elmer(post,-matc): Use modern fortran, unbreak, undeprecate ... These ports are due to be deleted in a couple of days because they use gcc34. I was curious if they actually specifically needed gcc34 or if any recent gfortan would do. The answer is these ports build fine with USES+=fortran, which pulls in lang/gcc rather than the deprecated lang/gcc34. The elmerpost port was broken on amd64; this is because it needs the -fPIC flag. I built it successfully in poudriere on FreeBSD 9.2, another platform that supposed elmerpost can't build on. I did not test i386, we'll see what QAT says. The listed maintainer has been unresponsive for months on many ports, so due to the fact these two ports are scheduled for deletion on Dec 27, I am not getting prior approval from maintainer. The deprecation and expiration settings are removed.		2013-12-26 02:47:52 +00:00
..
2d-rewriter	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
2dhf	Update to libmpc version 1.0.1 which brings the following fixes:	2013-10-26 00:52:33 +00:00
abinit	science/abinit: depends explicitly on "python"	2013-12-15 12:49:28 +00:00
afni	Update math/R to 3.0.2 patched r64207 and math/R-cran-SuppDists to 1.1-9.1;	2013-11-13 08:19:34 +00:00
avogadro	- Update from 1.1.0 to 1.1.1	2013-12-18 23:33:20 +00:00
bddsolve	Convert LIB_DEPENDS for ports depending on boost	2013-12-12 14:15:03 +00:00
bft	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
bodr	- Update to version 10	2013-11-02 17:34:59 +00:00
brian	Update to libmpc version 1.0.1 which brings the following fixes:	2013-10-26 00:52:33 +00:00
buddy	Reset maintainer for llwang@infor.org	2013-12-18 10:38:33 +00:00
cdcl	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
cdf	Update to libmpc version 1.0.1 which brings the following fixes:	2013-10-26 00:52:33 +00:00
cdo	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
cgnslib	Update to libmpc version 1.0.1 which brings the following fixes:	2013-10-26 00:52:33 +00:00
checkmol	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
chemical-mime-data	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
chemtool	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
chemtool-devel	science/chemtool-devel: Unbreak on FreeBSD 10+	2013-12-25 22:08:13 +00:00
clhep	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
colt	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
crf++	- Remove NO_STAGE as these have been tested to be safe	2013-09-25 00:54:08 +00:00
dcl	Update to libmpc version 1.0.1 which brings the following fixes:	2013-10-26 00:52:33 +00:00
devisor	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
dlpoly-classic	Update to libmpc version 1.0.1 which brings the following fixes:	2013-10-26 00:52:33 +00:00
dtiquery	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
ecs	Update to libmpc version 1.0.1 which brings the following fixes:	2013-10-26 00:52:33 +00:00
elmer-eio	Update to libmpc version 1.0.1 which brings the following fixes:	2013-10-26 00:52:33 +00:00
elmer-hutiter	Update to libmpc version 1.0.1 which brings the following fixes:	2013-10-26 00:52:33 +00:00
elmer-matc	science/elmer(post,-matc): Use modern fortran, unbreak, undeprecate	2013-12-26 02:47:52 +00:00
elmer-meshgen2d	- Remove NO_STAGE as these have been tested to be safe	2013-09-25 00:54:08 +00:00
elmergrid	- Remove NO_STAGE as these have been tested to be safe	2013-09-25 00:54:08 +00:00
elmerpost	science/elmer(post,-matc): Use modern fortran, unbreak, undeprecate	2013-12-26 02:47:52 +00:00
epte	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
euler	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
fastcap	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
fasthenry	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
felt	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
fisicalab	Added FisicaLab port.	2013-10-08 19:31:32 +00:00
flounder	Update to libmpc version 1.0.1 which brings the following fixes:	2013-10-26 00:52:33 +00:00
fvcom	Update to libmpc version 1.0.1 which brings the following fixes:	2013-10-26 00:52:33 +00:00
fvcom-mpi	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
fvm	Update to libmpc version 1.0.1 which brings the following fixes:	2013-10-26 00:52:33 +00:00
g3data	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
gamess	uncomment MANUAL_PACKAGE_BUILD.	2013-11-29 01:45:50 +00:00
gchemutils	Add patch to unbreak with libc++ 10.0+.	2013-12-03 22:10:25 +00:00
gdis	Explicitly link libraries on 10 unmaintained ports	2013-10-07 23:40:23 +00:00
getdp	Update to libmpc version 1.0.1 which brings the following fixes:	2013-10-26 00:52:33 +00:00
ghemical	Update to libmpc version 1.0.1 which brings the following fixes:	2013-10-26 00:52:33 +00:00
ghmm	- Remove NO_STAGE as these have been tested to be safe	2013-09-25 00:54:08 +00:00
gnudatalanguage	- Upgrade to 1.3.18.	2013-11-30 15:08:05 +00:00
gramps	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
gromacs	- Update from 4.6.4 to 4.6.5 [1]	2013-12-17 20:36:38 +00:00
gsmc	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
gtamsanalyzer	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
gwyddion	- Bump dependent ports' revisions (graphics/ilmbase and graphics/OpenEXR)	2013-11-20 14:25:28 +00:00
h5utils	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
harminv	Update to libmpc version 1.0.1 which brings the following fixes:	2013-10-26 00:52:33 +00:00
hdf	Update to libmpc version 1.0.1 which brings the following fixes:	2013-10-26 00:52:33 +00:00
hdf5	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
hdf5-18	- Fix PKGNAME collision	2013-12-11 18:38:53 +00:00
hdf-java	- Convert to dos2unix.mk	2013-11-19 23:08:44 +00:00
hs-bio	Update to libmpc version 1.0.1 which brings the following fixes:	2013-10-26 00:52:33 +00:00
InsightToolkit	Now when it builds on 10.x, drop maintainership	2013-12-21 00:28:51 +00:00
isaac-cfd	Update to libmpc version 1.0.1 which brings the following fixes:	2013-10-26 00:52:33 +00:00
jmol	- Update to version 13.2.3 [1]	2013-11-07 16:53:33 +00:00
jstrack	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
kalzium	- Update from 1.1.0 to 1.1.1	2013-12-18 23:33:20 +00:00
kst2	Add patches to fix build on 10 and head	2013-12-09 15:08:42 +00:00
lamprop	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
libctl	Update to libmpc version 1.0.1 which brings the following fixes:	2013-10-26 00:52:33 +00:00
libghemical	Update to libmpc version 1.0.1 which brings the following fixes:	2013-10-26 00:52:33 +00:00
libint	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
libkml	- Take maintainership	2013-11-10 07:10:14 +00:00
liblinear	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
liboglappth	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
libquantum	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
libsvm	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
libsvm-python	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
linsmith	- Remove manual creation and removal of share/applications, as it's now in the mtree (categories starting with [st])	2013-10-22 14:01:38 +00:00
massxpert	- Remove manual creation and removal of share/applications, as it's now in the mtree (categories starting with [st])	2013-10-22 14:01:38 +00:00
mbdyn	Update to libmpc version 1.0.1 which brings the following fixes:	2013-10-26 00:52:33 +00:00
mcstas	Update to libmpc version 1.0.1 which brings the following fixes:	2013-10-26 00:52:33 +00:00
medit	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
meep	Update to libmpc version 1.0.1 which brings the following fixes:	2013-10-26 00:52:33 +00:00
mei	- Upgrade to 1.0.4;	2013-11-26 21:30:22 +00:00
minc	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
minc2	Mark as broken: does not build with newer hdf5 version:	2013-12-06 11:44:48 +00:00
mol2ps	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
mpb	Update to libmpc version 1.0.1 which brings the following fixes:	2013-10-26 00:52:33 +00:00
mpqc	Update to libmpc version 1.0.1 which brings the following fixes:	2013-10-26 00:52:33 +00:00
mpqc-mpich	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
ncs	science/ncs: fix 'python' usage to remove implicity dependency of lang/python	2013-12-17 21:55:48 +00:00
netcdf	- Fix PKGNAME collision	2013-11-06 17:34:52 +00:00
netcdf3-ftn	- Fix PKGNAME collision	2013-11-06 17:35:50 +00:00
netcdf4	- Use CONFLICTS_INSTALL instead of CONFLICTS	2013-12-10 19:17:08 +00:00
netcdf-ftn	- Remove LATEST_LINK	2013-12-10 19:18:39 +00:00
nifticlib	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
openbabel	Add upstream patch to fix the build with libc++.	2013-11-13 15:49:25 +00:00
p5-Algorithm-SVMLight	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
p5-Chemistry-3DBuilder	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
p5-Chemistry-Bond-Find	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
p5-Chemistry-Canonicalize	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
p5-Chemistry-Elements	Support STAGEDIR.	2013-11-06 01:32:11 +00:00
p5-Chemistry-File-MDLMol	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
p5-Chemistry-File-Mopac	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
p5-Chemistry-File-PDB	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
p5-Chemistry-File-SLN	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
p5-Chemistry-File-SMARTS	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
p5-Chemistry-File-SMILES	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
p5-Chemistry-File-VRML	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
p5-Chemistry-File-XYZ	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
p5-Chemistry-FormulaPattern	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
p5-Chemistry-InternalCoords	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
p5-Chemistry-Isotope	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
p5-Chemistry-MacroMol	Support STAGEDIR.	2013-11-06 01:32:11 +00:00
p5-Chemistry-MidasPattern	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
p5-Chemistry-Mok	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
p5-Chemistry-Mol	Support STAGEDIR.	2013-11-06 01:32:11 +00:00
p5-Chemistry-Pattern	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
p5-Chemistry-Reaction	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
p5-Chemistry-Ring	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
p5-Geo-BUFR	Support STAGEDIR.	2013-11-06 01:32:11 +00:00
p5-Geo-Coordinates-Converter	Support STAGEDIR.	2013-11-06 01:32:11 +00:00
p5-Geo-Coordinates-Converter-iArea	- Support STAGEDIR	2013-09-30 20:59:03 +00:00
p5-Geo-ReadGRIB	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
p5-Geo-WebService-Elevation-USGS	Support STAGEDIR.	2013-11-06 01:32:11 +00:00
p5-PerlMol	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
p5-Physics-Unit	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
paje	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
paraview	Update freetype to 2.5.2.	2013-12-24 21:22:21 +00:00
peekabot	Convert LIB_DEPENDS for ports depending on boost	2013-12-12 14:15:03 +00:00
pnetcdf	Update to libmpc version 1.0.1 which brings the following fixes:	2013-10-26 00:52:33 +00:00
psi3	Update to libmpc version 1.0.1 which brings the following fixes:	2013-10-26 00:52:33 +00:00
psychopy	Update to libmpc version 1.0.1 which brings the following fixes:	2013-10-26 00:52:33 +00:00
py-coards	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
py-DendroPy	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
py-h5py	science/py-h5py: update to 2.2.1	2013-12-13 19:59:42 +00:00
py-hcluster	Update to libmpc version 1.0.1 which brings the following fixes:	2013-10-26 00:52:33 +00:00
py-mdp	Reset maintainer for llwang@infor.org	2013-12-18 10:38:33 +00:00
py-mlpy	Update to libmpc version 1.0.1 which brings the following fixes:	2013-10-26 00:52:33 +00:00
py-netCDF4	- Convert to dos2unix.mk	2013-11-19 23:08:44 +00:00
py-obspy	- Fix build with distribute -> setuptools change	2013-11-27 19:21:00 +00:00
py-paida	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
py-pupynere	Update to libmpc version 1.0.1 which brings the following fixes:	2013-10-26 00:52:33 +00:00
py-pyaixi	science/py-pyaixi: Implementation of the MC-AIXI-CTW AI algorithm	2013-12-08 14:12:47 +00:00
py-pydap	science/py-pydap: update to 3.1.1	2013-11-29 11:40:24 +00:00
py-pydicom	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
py-scikit-learn	Use PYDISTUTILS_AUTOPLIST.	2013-11-05 12:37:28 +00:00
py-scimath	- Update WWW:	2013-11-20 20:51:25 +00:00
py-scipy	- Fix distinfo	2013-11-18 15:36:42 +00:00
py-ws2300	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
pybrain	Update to libmpc version 1.0.1 which brings the following fixes:	2013-10-26 00:52:33 +00:00
pycdf	Update to libmpc version 1.0.1 which brings the following fixes:	2013-10-26 00:52:33 +00:00
pynn	Update to libmpc version 1.0.1 which brings the following fixes:	2013-10-26 00:52:33 +00:00
pyteomics	Update to 2.2.1	2013-11-29 11:57:18 +00:00
pyteomics.biolccc	- Update WWW:	2013-11-20 20:51:25 +00:00
qcl	- Update to version 0.6.3	2013-10-30 17:57:33 +00:00
qtresistors	- Convert to USES=qmake (and other USES while I'm here)	2013-11-22 12:55:00 +00:00
R-cran-AMORE	Add stage support to Mk/bsd.cran.mk and all USE_R_MOD ports (aka R-cran-*).	2013-11-27 18:56:43 +00:00
R-cran-bayesm	Add stage support to Mk/bsd.cran.mk and all USE_R_MOD ports (aka R-cran-*).	2013-11-27 18:56:43 +00:00
R-cran-DCluster	Add stage support to Mk/bsd.cran.mk and all USE_R_MOD ports (aka R-cran-*).	2013-11-27 18:56:43 +00:00
R-cran-e1071	Add stage support to Mk/bsd.cran.mk and all USE_R_MOD ports (aka R-cran-*).	2013-11-27 18:56:43 +00:00
R-cran-eco	Add stage support to Mk/bsd.cran.mk and all USE_R_MOD ports (aka R-cran-*).	2013-11-27 18:56:43 +00:00
R-cran-Epi	Add stage support to Mk/bsd.cran.mk and all USE_R_MOD ports (aka R-cran-*).	2013-11-27 18:56:43 +00:00
R-cran-epicalc	Add stage support to Mk/bsd.cran.mk and all USE_R_MOD ports (aka R-cran-*).	2013-11-27 18:56:43 +00:00
R-cran-snow	Add stage support to Mk/bsd.cran.mk and all USE_R_MOD ports (aka R-cran-*).	2013-11-27 18:56:43 +00:00
R-cran-som	Add stage support to Mk/bsd.cran.mk and all USE_R_MOD ports (aka R-cran-*).	2013-11-27 18:56:43 +00:00
ruby-dcl	Update to libmpc version 1.0.1 which brings the following fixes:	2013-10-26 00:52:33 +00:00
ruby-gphys	Update to libmpc version 1.0.1 which brings the following fixes:	2013-10-26 00:52:33 +00:00
ruby-netcdf	Update to libmpc version 1.0.1 which brings the following fixes:	2013-10-26 00:52:33 +00:00
rubygem-ai4r	- Add stage support	2013-10-30 02:56:33 +00:00
silo	- Update from 4.9 to 4.9.1	2013-12-18 23:27:40 +00:00
simlib	- Update to 3.02	2013-09-21 11:02:36 +00:00
step	Add my upstream commit that fixes the build with libc++.	2013-11-03 22:48:12 +00:00
svmlight	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
szip	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
udunits	- Strip shared library	2013-10-10 14:32:08 +00:00
v_sim	Update to libmpc version 1.0.1 which brings the following fixes:	2013-10-26 00:52:33 +00:00
veusz	- Update to 1.19.1	2013-12-22 14:33:44 +00:00
vmd	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
voro++	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
x11iraf	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
xfce4-equake-plugin	- Update MASTER_SITES macro, xfce4-equake-plugin is now hosted on	2013-10-31 17:11:01 +00:00
xmakemol	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
xmds	Add NO_STAGE all over the place in preparation for the staging support (cat: science)	2013-09-20 22:48:30 +00:00
Makefile	science/py-pyaixi: Implementation of the MC-AIXI-CTW AI algorithm	2013-12-08 14:12:47 +00:00