Mathieu Arnold 60d1a83c2a MASTER_SITES cleanup. ... - Replace ${MASTER_SITE_FOO} with FOO. - Merge MASTER_SITE_SUBDIR into MASTER_SITES when possible. (This means 99.9% of the time.) - Remove occurrences of MASTER_SITE_LOCAL when no subdirectory was present and no hint of what it should be was present. - Fix some logic. - And generally, make things more simple and easy to understand. While there, add magic values to the FESTIVAL, GENTOO, GIMP, GNUPG, QT and SAMBA macros. Also, replace some EXTRACT_SUFX occurences with USES=tar:*. Checked by: make fetch-urlall-list With hat: portmgr Sponsored by: Absolight		2015-05-14 10:15:04 +00:00
..
ariadne	6 ports categories: Remove $PTHREAD_LIBS	2015-03-24 16:01:21 +00:00
artemis	- Add empty directory to plist	2015-03-11 14:41:53 +00:00
avida	Cleanup plist	2014-12-20 17:27:08 +00:00
babel
biococoa	MASTER_SITES cleanup.	2015-05-14 10:15:04 +00:00
biojava
blat	Update to upstream version 36	2015-01-01 18:17:53 +00:00
chemeq
clustalw	MASTER_SITES cleanup.	2015-05-14 10:15:04 +00:00
consed	${ENV} does not exist, it is called ${SETENV}.	2015-04-13 14:49:37 +00:00
crux
emboss	Fix packaging as a user (pkg already takes care of credentials)	2015-03-18 21:52:19 +00:00
fasta
fasta3	- Update to 36.3.7a	2015-05-07 02:33:57 +00:00
fastdnaml
fluctuate
garlic
gff2ps
gmap
gperiodic
grappa
hmmer	- Remove deprecated option	2015-04-02 15:41:31 +00:00
htslib	Update ports in the [bcd]* categories to not use GH_COMMIT.	2015-05-06 15:16:53 +00:00
iolib	- Update to 1.13.10	2015-03-04 13:17:46 +00:00
jalview
lagan
lamarc
libsbml	- Update to 5.11.4	2015-05-12 08:58:14 +00:00
linux-foldingathome	Cleanup plist	2014-12-20 17:27:08 +00:00
mafft	6 ports categories: Remove $PTHREAD_LIBS	2015-03-24 16:01:21 +00:00
mapm3
migrate	Mark as broken unfetchable ports	2015-04-05 17:55:35 +00:00
molden
mopac	- Upadate biology/mopac to version 1.15	2014-12-16 22:10:23 +00:00
mrbayes
mummer
muscle
ncbi-blast+	- Unbreak	2015-05-04 06:08:59 +00:00
ncbi-toolkit
njplot	Mark as broken unfetchable ports	2015-04-05 17:55:35 +00:00
ortep3	Mark as broken unfetchable ports	2015-04-05 17:55:35 +00:00
p5-AcePerl	Reassign biology/ perl modules to perl@.	2015-05-08 18:12:36 +00:00
p5-Bio-ASN1-EntrezGene	Reassign biology/ perl modules to perl@.	2015-05-08 18:12:36 +00:00
p5-Bio-Das	Change the way Perl modules are installed, update the default Perl to 5.18.	2014-11-26 13:08:24 +00:00
p5-Bio-Das-Lite	Remove TEST dependency on p5-Test-Simple when the version in core is	2015-02-26 16:54:41 +00:00
p5-Bio-GFF3	Change the way Perl modules are installed, update the default Perl to 5.18.	2014-11-26 13:08:24 +00:00
p5-Bio-Glite	Change the way Perl modules are installed, update the default Perl to 5.18.	2014-11-26 13:08:24 +00:00
p5-Bio-Graphics	Some OCD cleanups on some of the perl@ ports.	2015-03-12 23:00:02 +00:00
p5-Bio-MAGETAB	Some OCD cleanups on some of the perl@ ports.	2015-03-12 23:00:02 +00:00
p5-Bio-NEXUS	Change the way Perl modules are installed, update the default Perl to 5.18.	2014-11-26 13:08:24 +00:00
p5-Bio-Phylo	- Update to 0.58	2014-12-07 04:41:47 +00:00
p5-Bio-SCF	Change the way Perl modules are installed, update the default Perl to 5.18.	2014-11-26 13:08:24 +00:00
p5-bioperl	Reassign biology/ perl modules to perl@.	2015-05-08 18:12:36 +00:00
p5-bioperl-run	For the new USE_GITHUB with only GH_TAGNAME set default DISTNAME to	2015-03-20 20:07:50 +00:00
paml	Update biology/paml to 4.8a and unbreak.	2015-04-10 15:39:01 +00:00
phrap
phred
phylip
phyml	Convert to USES=autoreconf	2014-12-28 19:14:13 +00:00
platon	biology/platon: Upgrade from 05 MAR 2015 => 30 MAR 2015 to unbreak	2015-04-11 15:41:22 +00:00
plink
plinkseq
povchem	Mark as broken unfetchable ports	2015-04-05 17:55:35 +00:00
primer3
protomol	Cleanup DIST* variables.	2015-05-11 18:34:57 +00:00
psi88
py-biopython	biology/py-biopython:	2015-01-19 20:21:12 +00:00
pycogent
pyfasta
python-nexus
recombine
ruby-bio	biology/ruby-bio: mark broken with ruby 2.2	2015-04-03 13:50:38 +00:00
samtools	Update ports in the [bcd]* categories to not use GH_COMMIT.	2015-05-06 15:16:53 +00:00
seaview	biology/seaview: Unbreak -- it fetches fine	2015-04-11 15:49:57 +00:00
seqan	biology/segan: Limit GCC to 4.8 while waiting for update	2015-03-21 11:53:27 +00:00
seqio
seqtools	biology/seqtools: 4.33 -> 4.34.1	2015-05-06 20:30:53 +00:00
sim4
ssaha	Cleanup plist	2014-12-20 17:27:08 +00:00
t_coffee	MASTER_SITES cleanup.	2015-05-14 10:15:04 +00:00
tinker	Update from 7.1.1 to 7.1.2.	2015-03-11 13:44:21 +00:00
treepuzzle
treeviewx
tRNAscan-SE
ugene	- Update to version 1.16.1	2015-03-23 01:44:43 +00:00
velvet	Designatate 4 ports as unsafe for parallel building	2015-01-19 17:43:57 +00:00
wise	Cleanup plist	2014-12-20 17:27:08 +00:00
xmolwt
Makefile	Remove expired ports:	2015-01-01 01:13:11 +00:00