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mirror of https://git.FreeBSD.org/ports.git synced 2025-01-19 08:13:21 +00:00
freebsd-ports/science
Wen Heping 1c5d99661f - Update to 5.0.2
PR:		193902
Submitted by:	tkato432@yahoo.com
2014-10-30 12:19:02 +00:00
..
2d-rewriter
afni Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
avogadro - Convert ports of science/ and security to new USES=python 2014-10-24 16:50:42 +00:00
bddsolve
bft
bodr
brian - Convert ports of science/ and security to new USES=python 2014-10-24 16:50:42 +00:00
buddy
cdcl
cdf Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
cdo
cgnslib Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
cgribex
checkmol
chemical-mime-data
chemtool
chemtool-devel
clhep
colt
crf++
dcl Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
devisor
dlpoly-classic - Update net/openmpi from 1.8.2 to 1.8.3 2014-09-28 03:41:24 +00:00
ecs Upgrade to version 2.0.3. 2014-09-14 14:42:20 +00:00
elmer-eio Mark the old elmer-* ports as deprecated: they are obsoleted by 2014-10-07 19:35:59 +00:00
elmer-matc Mark the old elmer-* ports as deprecated: they are obsoleted by 2014-10-07 19:35:59 +00:00
elmer-meshgen2d Mark the old elmer-* ports as deprecated: they are obsoleted by 2014-10-07 19:35:59 +00:00
elmergrid Mark the old elmer-* ports as deprecated: they are obsoleted by 2014-10-07 19:35:59 +00:00
epte
fastcap
fasthenry Support stage 2014-08-29 18:33:30 +00:00
fisicalab
fvcom Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
fvcom-mpi - Update net/openmpi from 1.8.2 to 1.8.3 2014-09-28 03:41:24 +00:00
fvm - Update net/openmpi from 1.8.2 to 1.8.3 2014-09-28 03:41:24 +00:00
gchemutils Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
getdp Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
ghemical science/mpqc: Don't override libtool -version-info, bump dependent ports 2014-09-25 13:56:06 +00:00
ghmm
gnudatalanguage - Upgrade to 0.9.5 2014-10-12 08:34:44 +00:00
gramps - Convert ports of science/ and security to new USES=python 2014-10-24 16:50:42 +00:00
grib_api - Add grib_api 1.12.3 2014-08-29 17:31:42 +00:00
gromacs - Update to 5.0.2 2014-10-30 12:19:02 +00:00
gsmc
gtamsanalyzer Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
gwyddion Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
h5utils
harminv Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
hdf Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
hdf5
hdf-java
hs-bio Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
InsightToolkit
isaac-cfd Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
jmol
jstrack Allow staging as a regular user 2014-10-19 15:47:31 +00:00
kalzium KDE/FreeBSD team presents KDE SC 4.14.2 and KDE Workspace 4.11.13! 2014-10-19 15:57:27 +00:00
kst2 Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
lamprop Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
libctl Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
libghemical science/mpqc: Don't override libtool -version-info, bump dependent ports 2014-09-25 13:56:06 +00:00
libint science: Fix mpqc, libint and unbreak ghemical, and libghemical atomically 2014-09-25 11:04:02 +00:00
libkml
liblinear
liboglappth Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
libquantum
libsvm - Convert ports of science/ and security to new USES=python 2014-10-24 16:50:42 +00:00
libsvm-python
linsmith - Update to 0.99.28 2014-10-14 04:55:08 +00:00
massxpert
mbdyn Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
medit Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
meep - Update net/openmpi from 1.8.2 to 1.8.3 2014-09-28 03:41:24 +00:00
mei - Convert ports of science/ and security to new USES=python 2014-10-24 16:50:42 +00:00
metaf2xml
minc2 Use default LIBTOOLIZE_ARGS 2014-09-13 18:25:04 +00:00
mol2ps
mpb Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
mpqc science/mpqc: Don't override libtool -version-info, bump dependent ports 2014-09-25 13:56:06 +00:00
mpqc-mpich Stage science/mpqc and science/mpqc-mpich 2014-09-08 00:20:03 +00:00
ncs - Update net/openmpi from 1.8.2 to 1.8.3 2014-09-28 03:41:24 +00:00
netcdf
netcdf-cxx
netcdf-fortran - Update to 4.4.1 2014-09-13 15:19:28 +00:00
nifticlib
openbabel - Convert ports of science/ and security to new USES=python 2014-10-24 16:50:42 +00:00
openkim Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
p5-Algorithm-SVMLight
p5-Chemistry-3DBuilder
p5-Chemistry-Bond-Find
p5-Chemistry-Canonicalize
p5-Chemistry-Elements
p5-Chemistry-File-MDLMol
p5-Chemistry-File-Mopac
p5-Chemistry-File-PDB
p5-Chemistry-File-SLN
p5-Chemistry-File-SMARTS
p5-Chemistry-File-SMILES
p5-Chemistry-File-VRML
p5-Chemistry-File-XYZ
p5-Chemistry-FormulaPattern
p5-Chemistry-InternalCoords
p5-Chemistry-Isotope
p5-Chemistry-MacroMol
p5-Chemistry-MidasPattern
p5-Chemistry-Mok
p5-Chemistry-Mol
p5-Chemistry-Pattern
p5-Chemistry-Reaction
p5-Chemistry-Ring
p5-Geo-BUFR
p5-Geo-Coordinates-Converter
p5-Geo-Coordinates-Converter-iArea
p5-Geo-ReadGRIB
p5-Geo-WebService-Elevation-USGS
p5-PerlMol
p5-Physics-Unit
paje Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
paraview Add USES=alias to several ports 2014-10-20 10:09:19 +00:00
pnetcdf - Update net/openmpi from 1.8.2 to 1.8.3 2014-09-28 03:41:24 +00:00
psychopy science/psychopy: switch from py-imaging to py-pillow 2014-10-07 17:00:37 +00:00
pulseview
py-cdo - Add py-cdo 1.2.3 2014-09-13 15:18:32 +00:00
py-coards - Convert ports of science/ and security to new USES=python 2014-10-24 16:50:42 +00:00
py-DendroPy - Convert ports of science/ and security to new USES=python 2014-10-24 16:50:42 +00:00
py-h5py - Convert ports of science/ and security to new USES=python 2014-10-24 16:50:42 +00:00
py-hcluster - Convert ports of science/ and security to new USES=python 2014-10-24 16:50:42 +00:00
py-mdp - Convert ports of science/ and security to new USES=python 2014-10-24 16:50:42 +00:00
py-mlpy - Convert ports of science/ and security to new USES=python 2014-10-24 16:50:42 +00:00
py-netCDF4 - Convert ports of science/ and security to new USES=python 2014-10-24 16:50:42 +00:00
py-obspy Fix compilation after recent numpy patch. 2014-10-23 15:23:27 +00:00
py-paida - Convert ports of science/ and security to new USES=python 2014-10-24 16:50:42 +00:00
py-pupynere - Convert ports of science/ and security to new USES=python 2014-10-24 16:50:42 +00:00
py-pyaixi - Convert ports of science/ and security to new USES=python 2014-10-24 16:50:42 +00:00
py-pydap - Convert ports of science/ and security to new USES=python 2014-10-24 16:50:42 +00:00
py-pydicom - Convert ports of science/ and security to new USES=python 2014-10-24 16:50:42 +00:00
py-pysal Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
py-scikit-learn Explicitly link with libblas to avoid errors like 2014-10-30 11:52:48 +00:00
py-scimath - Convert ports of science/ and security to new USES=python 2014-10-24 16:50:42 +00:00
py-scipy Fix build after r369447 2014-09-30 08:39:34 +00:00
py-ws2300 - Convert ports of science/ and security to new USES=python 2014-10-24 16:50:42 +00:00
pybrain - Convert ports of science/ and security to new USES=python 2014-10-24 16:50:42 +00:00
pycdf - Convert ports of science/ and security to new USES=python 2014-10-24 16:50:42 +00:00
pynn - Convert ports of science/ and security to new USES=python 2014-10-24 16:50:42 +00:00
pyteomics - Convert ports of science/ and security to new USES=python 2014-10-24 16:50:42 +00:00
pyteomics.biolccc - Convert ports of science/ and security to new USES=python 2014-10-24 16:50:42 +00:00
qcl - Fix build with clang by using std::vector instead of variable size array of non-POD type 2014-09-04 18:43:58 +00:00
qtresistors
R-cran-AMORE Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
R-cran-bayesm Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
R-cran-DCluster Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
R-cran-e1071 Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
R-cran-eco Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
R-cran-Epi Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
R-cran-epicalc Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
R-cran-snow Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
R-cran-som Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
rubygem-ai4r
rubygem-cdo - Add rubygem-cdo 1.2.3 2014-09-13 15:18:54 +00:00
rubygem-netcdf
sigrok-cli
sigrok-firmware
sigrok-firmware-fx2lafw
sigrok-firmware-utils - Convert ports of science/ and security to new USES=python 2014-10-24 16:50:42 +00:00
silo - Update to 4.10 2014-09-12 23:32:38 +00:00
simlib
simsmith
step KDE/FreeBSD team presents KDE SC 4.14.2 and KDE Workspace 4.11.13! 2014-10-19 15:57:27 +00:00
svmlight
szip
udunits - Update to 2.2.17 2014-09-03 19:09:22 +00:00
v_sim Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
veusz - Convert ports of science/ and security to new USES=python 2014-10-24 16:50:42 +00:00
vmd Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
voro++
xfce4-equake-plugin - Update to 1.3.5 2014-09-18 04:41:04 +00:00
xmakemol Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
Makefile Remove expired ports 2014-09-20 09:45:04 +00:00