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freebsd-ports/biology
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Ade Lovett 3f651573ad Whoa there, boy, that's a mighty big commit y'all have there... 
Begin autotools sanitization sequence by requiring ports to explicitly
specify which version of {libtool,autoconf,automake} they need, erasing
the concept of a "system default".

For ports-in-waiting:

	USE_LIBTOOL=YES		->	USE_LIBTOOL_VER=13
	USE_AUTOCONF=YES	->	USE_AUTOCONF_VER=213
	USE_AUTOMAKE=YES	->	USE_AUTOMAKE_VER=14

Ports attempting to use the old style system after June 1st 2004 will be
sorely disappointed.
2004-03-14 06:17:56 +00:00
..
act
Bump PORTREVISION on all ports that depend on gettext to aid with upgrading.
2004-02-04 05:21:48 +00:00
artemis
Bump PORTREVISION on all ports that depend on gettext to aid with upgrading.
2004-02-04 05:21:48 +00:00
avida
Maintainer reports being unable to look after this port any longer.
2004-03-07 00:18:27 +00:00
babel
- Fix build on AMD64
2004-02-01 22:02:22 +00:00
biojava
Add SIZE.
2004-01-27 20:51:07 +00:00
chemeq
Bump PORTREVISION on all ports that depend on gettext to aid with upgrading.
2004-02-04 05:21:48 +00:00
clustalw
- Add an end-of-string to each line of the input
2003-08-28 04:51:02 +00:00
coalesce
Cosmetic fix: use %%DOCSDIR%% macro.
2003-10-22 09:37:18 +00:00
crimap
Cosmetic fix: use %%DOCSDIR%% macro.
2003-10-22 09:37:18 +00:00
deft
…
distribfold
Update to 20040226 release
2004-02-27 00:01:02 +00:00
dna-qc
BROKEN on alpha 5.x: does not compile
2004-02-23 03:54:36 +00:00
emboss
Bump PORTREVISION on all ports that depend on gettext to aid with upgrading.
2004-02-04 05:21:48 +00:00
fasta
Cosmetic fix: use %%DOCSDIR%% macro.
2003-10-22 09:37:18 +00:00
fasta3
BROKEN: Checksum mismatch
2004-02-21 19:31:10 +00:00
fastdnaml
Bump PORTREVISION on all ports that depend on gettext to aid with upgrading.
2004-02-04 05:21:48 +00:00
flip
Correct whitespace in COMMENT
2004-02-07 03:34:43 +00:00
fluctuate
Cosmetic fix: use %%DOCSDIR%% macro.
2003-10-22 09:37:18 +00:00
garlic
BROKEN: Checksum mismatch
2004-02-22 00:43:16 +00:00
genpak
Bump PORTREVISION on all ports that depend on gettext to aid with upgrading.
2004-02-04 05:21:48 +00:00
gff2ps
Cosmetic fix: use %%DOCSDIR%% macro.
2003-10-22 09:37:18 +00:00
gperiodic
Bump PORTREVISION on all ports that depend on gettext to aid with upgrading.
2004-02-04 05:21:48 +00:00
grappa
Bump PORTREVISION on all ports that depend on gettext to aid with upgrading.
2004-02-04 05:21:48 +00:00
hmmer
Cosmetic fix: use %%DOCSDIR%% macro.
2003-10-22 09:37:18 +00:00
kinemage
Use PLIST_FILES (bento-tested, marcus-reviewed).
2004-02-06 13:12:53 +00:00
L-Breeder
Use PLIST_FILES (bento-tested, marcus-reviewed).
2004-02-06 13:12:53 +00:00
lamarc
…
libgenome
Whoa there, boy, that's a mighty big commit y'all have there...
2004-03-14 06:17:56 +00:00
lsysexp
Bump PORTREVISION on all ports that depend on gettext to aid with upgrading.
2004-02-04 05:21:48 +00:00
migrate
BROKEN on alpha: Does not compile
2004-02-23 03:59:05 +00:00
molden
Cosmetic fix: use %%DOCSDIR%% macro.
2003-10-22 09:37:18 +00:00
mopac
Bump PORTREVISION on all ports that depend on gettext to aid with upgrading.
2004-02-04 05:21:48 +00:00
nab
${MASTER_SITES} are slow. This patch adds a mirror site to help
2003-11-06 11:32:30 +00:00
ncbi-toolkit
Use the FIND and XARGS macros introduced in bsd.port.mk 1.391.
2003-11-13 14:45:08 +00:00
nclever
…
ortep3
Cosmetic fix: use %%DOCSDIR%% macro.
2003-10-22 09:37:18 +00:00
p5-AcePerl
BROKEN on amd64 and ia64: Does not compile (missing -fPIC)
2004-03-07 13:00:02 +00:00
p5-bioperl
Unmark as broken for 4.x; instead, mark as ignore for perl < 5.6.
2004-03-08 03:29:16 +00:00
paml
Cosmetic fix: use %%DOCSDIR%% macro.
2003-10-22 09:37:18 +00:00
phylip
- Update to 3.6.b
2004-01-31 16:06:24 +00:00
pkg
…
platon
- Update to last snapshot
2003-12-07 00:29:56 +00:00
povchem
Insert "-l" into PATCH_ARGS, to cause the "patch" command to ignore
2004-03-09 00:17:05 +00:00
primer3
- Fix MASTER_SITES
2004-02-27 22:20:43 +00:00
psi88
BROKEN: Does not fetch
2004-02-21 21:48:55 +00:00
py-biopython
Upgrade to 1.23.
2004-02-09 21:40:47 +00:00
pymol
Bump PORTREVISION on all ports that depend on gettext to aid with upgrading.
2004-02-04 05:21:48 +00:00
rasmol
Add SIZE.
2004-01-27 20:51:07 +00:00
recombine
Cosmetic fix: use %%DOCSDIR%% macro.
2003-10-22 09:37:18 +00:00
ruby-bio
Update to 0.5.3.
2003-10-14 22:25:59 +00:00
seaview
- Update to version 2003.11.25
2004-01-29 10:09:29 +00:00
seqio
Respect CC and CFLAGS
2003-10-23 00:01:04 +00:00
sim4
- Update to version 2003.09.21
2004-03-12 13:53:23 +00:00
spdbv
…
t_coffee
Use the CPIO macro defined in bsd.port.mk.
2004-01-22 12:18:43 +00:00
tinker
- Update checksum again, seems author removes .ps version of documentation
2003-11-21 22:28:34 +00:00
treepuzzle
Use PLIST_FILES (bento-tested, marcus-reviewed).
2004-02-06 13:12:53 +00:00
treeviewx
- Update to version 0.4
2004-02-28 09:56:06 +00:00
tRNAscan-SE
Cosmetic fix: use %%DOCSDIR%% macro.
2003-10-22 09:37:18 +00:00
wise
Cosmetic fix: use %%DOCSDIR%% macro.
2003-10-22 09:37:18 +00:00
xdrawchem
Bump PORTREVISION on all ports that depend on gettext to aid with upgrading.
2004-02-04 05:21:48 +00:00
xmolwt
Bump PORTREVISION on all ports that depend on gettext to aid with upgrading.
2004-02-04 05:21:48 +00:00
Makefile
new port:biology/lsysexp
2003-09-03 02:23:23 +00:00