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53 lines
1.5 KiB
Makefile
53 lines
1.5 KiB
Makefile
PORTNAME= bolt-lmm
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DISTVERSION= 2.3.6
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PORTREVISION= 6
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CATEGORIES= biology
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MASTER_SITES= https://data.broadinstitute.org/alkesgroup/BOLT-LMM/downloads/
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DISTNAME= BOLT-LMM_v${PORTVERSION}
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MAINTAINER= jwb@FreeBSD.org
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COMMENT= Mixed model association testing and variance component analysis
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WWW= https://data.broadinstitute.org/alkesgroup/BOLT-LMM/
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LICENSE= GPLv3
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LICENSE_FILE= ${WRKSRC}/license.txt
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LIB_DEPENDS= libnlopt.so:math/nlopt \
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libopenblas.so:math/openblas \
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libboost_program_options.so:devel/boost-libs
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USES= gmake
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BUILD_WRKSRC= ${WRKDIR}/${DISTNAME}/src
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INSTALL_WRKSRC= ${WRKDIR}/${DISTNAME}/src
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CXXFLAGS_i386= -DUSE_SSE -msse -msse2
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CXXFLAGS_amd64= -DUSE_SSE
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MAKE_ARGS= BOOST_INSTALL_DIR=${LOCALBASE} \
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NLOPT_INSTALL_DIR=${LOCALBASE} \
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ZLIB_STATIC_DIR=/usr/lib \
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LIBSTDCXX_STATIC_DIR=/usr/lib \
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GLIBC_STATIC_DIR=/usr/lib \
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SSEFLAGS="" \
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MEMCPY="" \
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LLAPACK="-lopenblas"
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CONFLICTS_INSTALL= rubygem-bolt # bin/bolt
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PORTEXAMPLES= *
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OPTIONS_DEFINE= EXAMPLES
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pre-configure:
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@${RM} ${WRKSRC}/example/*.orig ${WRKSRC}/bolt
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@${REINPLACE_CMD} -e 's|tables/|${DATADIR}/tables/|g' \
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${BUILD_WRKSRC}/BoltParams.cpp
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@${REINPLACE_CMD} -e 's|../tables/|${DATADIR}/tables/|g' \
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${WRKSRC}/example/run_example.sh
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do-install:
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${INSTALL_PROGRAM} ${INSTALL_WRKSRC}/bolt ${STAGEDIR}${PREFIX}/bin
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(cd ${WRKSRC}/example && ${COPYTREE_SHARE} . ${STAGEDIR}${EXAMPLESDIR})
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(cd ${WRKSRC} && ${COPYTREE_SHARE} tables ${STAGEDIR}${DATADIR})
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.include <bsd.port.mk>
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