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abyss
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ad2vcf
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artemis
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atac-seq
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biology/atac-seq: Update to 0.1.1
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2023-01-12 13:00:03 -06:00 |
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augustus
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math/suitesparse*: bump PORTREVISION of dependant ports
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2023-01-19 17:45:37 +01:00 |
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avida
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babel
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bamtools
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bamutil
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barrnap
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bbmap
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bcftools
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biology/bcftools: Update to 1.16
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2023-01-05 17:19:22 -06:00 |
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bedtools
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bfc
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bio-mocha
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biology/bio-mocha: Update to 1.16
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2023-01-05 17:21:03 -06:00 |
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bioawk
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biococoa
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biolibc
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biolibc-tools
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bioparser
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biosig
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math/suitesparse*: bump PORTREVISION of dependant ports
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2023-01-19 17:45:37 +01:00 |
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biosoup
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biostar-tools
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bolt-lmm
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*/*: bump libboost*.so libraries consumert after Boost upgrade
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2023-01-16 22:32:07 +03:00 |
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bowtie
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bowtie2
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biology/bowtie2: Update to 2.5.1
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2023-01-21 16:30:48 -06:00 |
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bwa
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canu
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cd-hit
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cdbfasta
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checkm
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clustal-omega
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clustalw
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cufflinks
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*/*: bump libboost*.so libraries consumert after Boost upgrade
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2023-01-16 22:32:07 +03:00 |
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cytoscape
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ddocent
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diamond
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biology/diamond: Update to 2.1.1
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2023-02-10 13:36:10 -04:00 |
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dsr-pdb
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*/*: bump libboost*.so libraries consumert after Boost upgrade
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2023-01-16 22:32:07 +03:00 |
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edlib
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emboss
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biology/emboss: Ignore with mysql 8.0
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2023-02-01 04:39:38 -06:00 |
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erminej
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exonerate
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fasda
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fasta
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fasta3
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fastahack
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fastdnaml
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fastool
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fastp
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fastq-trim
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fastqc
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fasttree
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fastx-toolkit
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figtree
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flash
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fluctuate
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freebayes
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biology/freebayes: Drop redundant tabixpp dep
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2023-01-22 10:42:34 -06:00 |
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garlic
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gatk
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gcta
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gemma
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generand
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gff2ps
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gffread
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gmap
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gperiodic
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graphlan
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groopm
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*/*: rename CHEESESHOP to PYPI in MASTER_SITES
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2023-01-11 18:58:34 +03:00 |
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haplohseq
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*/*: bump libboost*.so libraries consumert after Boost upgrade
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2023-01-16 22:32:07 +03:00 |
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hhsuite
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hisat2
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hmmer
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htslib
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biology/htslib: Update to 1.16
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2023-01-05 17:16:08 -06:00 |
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hyphy
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biology/hyphy: Update to 2.5.47
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2023-02-03 23:36:47 -04:00 |
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igv
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infernal
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iolib
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iqtree
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jalview
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jellyfish
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biology/jellyfish: Bump PORTREVISION for biology/htslib update
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2023-01-05 19:24:44 -06:00 |
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kallisto
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kmcp
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all: Bump PORTREVISION after lang/go{119,120} update
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2023-02-15 14:06:01 -05:00 |
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lamarc
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biology/lamarc: Refactor after wxgtk28 removal
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2022-12-31 04:54:58 +01:00 |
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libbigwig
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libcombine
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libgff
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libgtextutils
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libneurosim
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libnuml
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libsbml
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biology/libsbml: unbreak build after 18c6e18276 (+)
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2023-01-18 17:47:24 +03:00 |
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libsedml
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linux-foldingathome
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mafft
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mapm3
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megahit
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metaeuk
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migrate
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minimap2
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mmseqs2
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molden
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mothur
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mrbayes
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mummer
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muscle
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ncbi-blast+
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ncbi-cxx-toolkit
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graphics/proj: Update to 9.1.1
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2023-01-18 15:48:50 +01:00 |
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ncbi-entrez-direct
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all: Bump PORTREVISION after lang/go{119,120} update
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2023-02-15 14:06:01 -05:00 |
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ncbi-toolkit
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ncbi-vdb
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ngs-sdk
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p5-AcePerl
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p5-Bio-ASN1-EntrezGene
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p5-Bio-Cluster
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p5-Bio-Coordinate
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p5-Bio-Das
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p5-Bio-Das-Lite
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p5-Bio-DB-EMBL
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p5-Bio-DB-NCBIHelper
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p5-Bio-FeatureIO
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p5-Bio-GFF3
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p5-Bio-Glite
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p5-Bio-Graphics
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p5-Bio-MAGETAB
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p5-Bio-NEXUS
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p5-Bio-Phylo
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p5-Bio-SCF
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p5-Bio-Variation
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p5-BioPerl
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p5-BioPerl-Run
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p5-transdecoder
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biology/p5-transdecoder: Update to 5.7.0
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2023-01-30 16:30:54 -06:00 |
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p5-TrimGalore
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paml
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pbbam
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biology/pbbam: Bump PORTREVISION for biology/htslib update
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2023-01-05 19:25:09 -06:00 |
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pbseqan
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peak-classifier
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pear-merger
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phrap
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phred
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phyml
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picard-tools
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plink
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pooler
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primer3
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prodigal
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prodigy-lig
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biology/prodigy-lig: Update 1.0.0-3 -> 1.0.1
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2023-01-23 00:17:38 -08:00 |
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protomol
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psi88
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py-bcbio-gff
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*/*: rename CHEESESHOP to PYPI in MASTER_SITES
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2023-01-11 18:58:34 +03:00 |
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py-biom-format
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*/*: rename CHEESESHOP to PYPI in MASTER_SITES
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2023-01-11 18:58:34 +03:00 |
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py-biopython
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py-biosig
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biology/py-biosig: New port: Library for reading and writing different biosignal data format
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2022-12-30 00:32:02 -08:00 |
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py-bx-python
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*/*: rename CHEESESHOP to PYPI in MASTER_SITES
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2023-01-11 18:58:34 +03:00 |
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py-crossmap
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*/*: rename CHEESESHOP to PYPI in MASTER_SITES
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2023-01-11 18:58:34 +03:00 |
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py-cutadapt
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*/*: rename CHEESESHOP to PYPI in MASTER_SITES
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2023-01-11 18:58:34 +03:00 |
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py-deeptools
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*/*: rename CHEESESHOP to PYPI in MASTER_SITES
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2023-01-11 18:58:34 +03:00 |
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py-deeptoolsintervals
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*/*: rename CHEESESHOP to PYPI in MASTER_SITES
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2023-01-11 18:58:34 +03:00 |
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py-dna-features-viewer
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*/*: rename CHEESESHOP to PYPI in MASTER_SITES
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2023-01-11 18:58:34 +03:00 |
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py-dnaio
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*/*: rename CHEESESHOP to PYPI in MASTER_SITES
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2023-01-11 18:58:34 +03:00 |
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py-ete3
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*/*: rename CHEESESHOP to PYPI in MASTER_SITES
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2023-01-11 18:58:34 +03:00 |
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py-Genesis-PyAPI
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*/*: rename CHEESESHOP to PYPI in MASTER_SITES
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2023-01-11 18:58:34 +03:00 |
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py-gffutils
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*/*: rename CHEESESHOP to PYPI in MASTER_SITES
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2023-01-11 18:58:34 +03:00 |
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py-goatools
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*/*: rename CHEESESHOP to PYPI in MASTER_SITES
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2023-01-11 18:58:34 +03:00 |
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py-gtfparse
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*/*: rename CHEESESHOP to PYPI in MASTER_SITES
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2023-01-11 18:58:34 +03:00 |
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py-hits
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*/*: rename CHEESESHOP to PYPI in MASTER_SITES
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2023-01-11 18:58:34 +03:00 |
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py-libnuml
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py-libsedml
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py-loompy
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*/*: rename CHEESESHOP to PYPI in MASTER_SITES
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2023-01-11 18:58:34 +03:00 |
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py-macs2
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py-mrcfile
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*/*: rename CHEESESHOP to PYPI in MASTER_SITES
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2023-01-11 18:58:34 +03:00 |
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py-multiqc
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*/*: rename CHEESESHOP to PYPI in MASTER_SITES
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2023-01-11 18:58:34 +03:00 |
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py-ont-fast5-api
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py-orange3-bioinformatics
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*/*: rename CHEESESHOP to PYPI in MASTER_SITES
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2023-01-11 18:58:34 +03:00 |
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py-orange3-single-cell
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py-pandas-charm
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*/*: rename CHEESESHOP to PYPI in MASTER_SITES
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2023-01-11 18:58:34 +03:00 |
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py-py2bit
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*/*: rename CHEESESHOP to PYPI in MASTER_SITES
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2023-01-11 18:58:34 +03:00 |
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py-pybigwig
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*/*: rename CHEESESHOP to PYPI in MASTER_SITES
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2023-01-11 18:58:34 +03:00 |
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py-pyfaidx
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*/*: rename CHEESESHOP to PYPI in MASTER_SITES
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2023-01-11 18:58:34 +03:00 |
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py-pyrodigal
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*/*: rename CHEESESHOP to PYPI in MASTER_SITES
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2023-01-11 18:58:34 +03:00 |
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py-pysam
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*/*: rename CHEESESHOP to PYPI in MASTER_SITES
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2023-01-11 18:58:34 +03:00 |
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py-PySCeS
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*/*: rename CHEESESHOP to PYPI in MASTER_SITES
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2023-01-11 18:58:34 +03:00 |
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py-python-libsbml
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*/*: rename CHEESESHOP to PYPI in MASTER_SITES
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2023-01-11 18:58:34 +03:00 |
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py-pywgsim
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*/*: rename CHEESESHOP to PYPI in MASTER_SITES
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2023-01-11 18:58:34 +03:00 |
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py-resdk
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Revert "Mk/Uses/python.mk: Fix USE_PYTHON=pep517: always compile and install bytecode"
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2023-02-05 14:05:02 -05:00 |
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py-scikit-bio
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*/*: rename CHEESESHOP to PYPI in MASTER_SITES
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2023-01-11 18:58:34 +03:00 |
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py-valerius
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py-xenaPython
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*/*: rename CHEESESHOP to PYPI in MASTER_SITES
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2023-01-11 18:58:34 +03:00 |
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pyfasta
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*/*: rename CHEESESHOP to PYPI in MASTER_SITES
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2023-01-11 18:58:34 +03:00 |
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python-nexus
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*/*: rename CHEESESHOP to PYPI in MASTER_SITES
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2023-01-11 18:58:34 +03:00 |
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rainbow
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rampler
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readseq
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recombine
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rna-seq
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biology/rna-seq: Update to 0.1.1
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2023-01-12 13:02:14 -06:00 |
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ruby-bio
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Mk/**ruby.mk: Switch from USE_RUBY=yes to USES=ruby
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2023-01-14 17:08:33 -06:00 |
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rubygem-bio
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Mk/**ruby.mk: Switch from USE_RUBY=yes to USES=ruby
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2023-01-14 17:08:33 -06:00 |
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rubygem-bio-executables
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Mk/**ruby.mk: Switch from USE_RUBY=yes to USES=ruby
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2023-01-14 17:08:33 -06:00 |
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rubygem-bio-old-biofetch-emulator
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Mk/**ruby.mk: Switch from USE_RUBY=yes to USES=ruby
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2023-01-14 17:08:33 -06:00 |
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rubygem-bio-shell
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Mk/**ruby.mk: Switch from USE_RUBY=yes to USES=ruby
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2023-01-14 17:08:33 -06:00 |
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sam2pairwise
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samtools
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biology/samtools: Update to 1.16.1
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2023-01-05 17:17:34 -06:00 |
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scrm
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seaview
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seqan
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seqan1
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seqan3
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seqan-apps
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seqio
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seqkit
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all: Bump PORTREVISION after lang/go{119,120} update
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2023-02-15 14:06:01 -05:00 |
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seqtk
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sigviewer
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sim4
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slclust
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smithwaterman
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snpeff
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biology/snpeff: Update to 5.1
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2022-12-19 12:50:00 -06:00 |
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spoa
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sra-tools
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stacks
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star
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biology/star: Bump PORTREVISION for biology/htslib update
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2023-01-05 19:27:16 -06:00 |
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stringtie
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subread
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tabixpp
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biology/tabixpp: Deprecate
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2023-01-22 11:01:57 -06:00 |
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taxonkit
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all: Bump PORTREVISION after lang/go{119,120} update
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2023-02-15 14:06:01 -05:00 |
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treekin
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treepuzzle
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trimadap
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trimmomatic
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tRNAscan-SE
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ucsc-userapps
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ugene
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unikmer
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all: Bump PORTREVISION after lang/go{119,120} update
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2023-02-15 14:06:01 -05:00 |
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vcf2hap
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vcf-split
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vcflib
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biology/vcflib: Update to 1.0.7
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2023-02-09 09:35:32 -06:00 |
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vcftools
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velvet
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viennarna
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vsearch
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vt
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biology/vt: Bump PORTREVISION for biology/htslib update
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2023-01-05 19:19:19 -06:00 |
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wfa2-lib
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biology/wfa2-lib: Unbreak build on aarch64, probably others
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2023-01-31 09:17:52 -06:00 |
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wise
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Makefile
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biology/wfa2-lib: Exact gap-affine algorithm using homology
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2023-01-30 13:09:02 -06:00 |
