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fee06d414a
freebsd-ports/science
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Thierry Thomas fee06d414a - Upgrade to 1.0.4; 
- Stagify;

- let the port use a specific python version (A).

Submitted by:	mva (A)
2013-11-26 21:30:22 +00:00
..
2d-rewriter Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
2dhf Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
abinit Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
afni Update math/R to 3.0.2 patched r64207 and math/R-cran-SuppDists to 1.1-9.1; 2013-11-13 08:19:34 +00:00
avogadro Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
bddsolve Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
bft Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
bodr - Update to version 10 2013-11-02 17:34:59 +00:00
brian Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
buddy Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
cdcl Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
cdf Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
cdo Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
cgnslib Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
checkmol Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
chemical-mime-data Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
chemtool Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
chemtool-devel Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
clhep Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
colt Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
crf++ - Remove NO_STAGE as these have been tested to be safe 2013-09-25 00:54:08 +00:00
dcl Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
devisor Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
dlpoly-classic Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
dtiquery Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
ecs Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
elmer-eio Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
elmer-hutiter Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
elmer-matc Mark deprecated with a deadline of 33 days from today since this is 2013-11-25 00:38:48 +00:00
elmer-meshgen2d - Remove NO_STAGE as these have been tested to be safe 2013-09-25 00:54:08 +00:00
elmergrid - Remove NO_STAGE as these have been tested to be safe 2013-09-25 00:54:08 +00:00
elmerpost Mark deprecated with a deadline of 33 days from today since this is 2013-11-25 00:43:10 +00:00
epte Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
euler Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
fastcap Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
fasthenry Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
felt Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
fisicalab Added FisicaLab port. 2013-10-08 19:31:32 +00:00
flounder Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
fvcom Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
fvcom-mpi Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
fvm Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
g3data Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
gamess Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
gchemutils - Remove manual creation and removal of share/applications, as it's now in the mtree (categories starting with [st]) 2013-10-22 14:01:38 +00:00
gdis Explicitly link libraries on 10 unmaintained ports 2013-10-07 23:40:23 +00:00
getdp Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
ghemical Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
ghmm - Remove NO_STAGE as these have been tested to be safe 2013-09-25 00:54:08 +00:00
gnudatalanguage Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
gramps Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
gromacs science/gromacs: Update to version 4.6.4 2013-11-26 17:45:42 +00:00
gsmc Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
gtamsanalyzer Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
gwyddion - Bump dependent ports' revisions (graphics/ilmbase and graphics/OpenEXR) 2013-11-20 14:25:28 +00:00
h5utils Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
harminv Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
hdf Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
hdf5 Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
hdf5-18 - Remove NO_STAGE as these have been tested to be safe 2013-09-25 00:54:08 +00:00
hdf-java - Convert to dos2unix.mk 2013-11-19 23:08:44 +00:00
hs-bio Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
InsightToolkit - Take maintainership 2013-10-31 19:51:37 +00:00
isaac-cfd Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
jmol - Update to version 13.2.3 [1] 2013-11-07 16:53:33 +00:00
jstrack Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
kalzium Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
kst2 - Support staging 2013-10-23 13:08:41 +00:00
lamprop Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
libctl Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
libghemical Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
libint Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
libkml - Take maintainership 2013-11-10 07:10:14 +00:00
liblinear Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
liboglappth Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
libquantum Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
libsvm Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
libsvm-python Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
linsmith - Remove manual creation and removal of share/applications, as it's now in the mtree (categories starting with [st]) 2013-10-22 14:01:38 +00:00
massxpert - Remove manual creation and removal of share/applications, as it's now in the mtree (categories starting with [st]) 2013-10-22 14:01:38 +00:00
mbdyn Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
mcstas Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
medit Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
meep Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
mei - Upgrade to 1.0.4; 2013-11-26 21:30:22 +00:00
minc Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
minc2 Fix package name collision 2013-10-14 06:52:32 +00:00
mol2ps Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
mpb Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
mpqc Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
mpqc-mpich Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
ncs Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
netcdf - Fix PKGNAME collision 2013-11-06 17:34:52 +00:00
netcdf3-ftn - Fix PKGNAME collision 2013-11-06 17:35:50 +00:00
netcdf4 Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
netcdf-ftn Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
nifticlib Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
omnetpp - Chase x11-toolkits/blt library name change 2013-11-19 11:15:07 +00:00
openbabel Add upstream patch to fix the build with libc++. 2013-11-13 15:49:25 +00:00
p5-Algorithm-SVMLight Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
p5-Chemistry-3DBuilder Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
p5-Chemistry-Bond-Find Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
p5-Chemistry-Canonicalize Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
p5-Chemistry-Elements Support STAGEDIR. 2013-11-06 01:32:11 +00:00
p5-Chemistry-File-MDLMol Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
p5-Chemistry-File-Mopac Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
p5-Chemistry-File-PDB Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
p5-Chemistry-File-SLN Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
p5-Chemistry-File-SMARTS Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
p5-Chemistry-File-SMILES Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
p5-Chemistry-File-VRML Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
p5-Chemistry-File-XYZ Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
p5-Chemistry-FormulaPattern Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
p5-Chemistry-InternalCoords Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
p5-Chemistry-Isotope Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
p5-Chemistry-MacroMol Support STAGEDIR. 2013-11-06 01:32:11 +00:00
p5-Chemistry-MidasPattern Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
p5-Chemistry-Mok Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
p5-Chemistry-Mol Support STAGEDIR. 2013-11-06 01:32:11 +00:00
p5-Chemistry-Pattern Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
p5-Chemistry-Reaction Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
p5-Chemistry-Ring Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
p5-Geo-BUFR Support STAGEDIR. 2013-11-06 01:32:11 +00:00
p5-Geo-Coordinates-Converter Support STAGEDIR. 2013-11-06 01:32:11 +00:00
p5-Geo-Coordinates-Converter-iArea - Support STAGEDIR 2013-09-30 20:59:03 +00:00
p5-Geo-ReadGRIB Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
p5-Geo-WebService-Elevation-USGS Support STAGEDIR. 2013-11-06 01:32:11 +00:00
p5-PerlMol Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
p5-Physics-Unit Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
paje Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
paraview science/paraview: add <unistd.h>, <cstddef>, other c++ fixes 2013-10-02 12:00:31 +00:00
peekabot Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
pnetcdf Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
psi3 Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
psychopy Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
py-coards Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
py-DendroPy Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
py-h5py science/py-h5py: update to 2.2.0 2013-11-13 21:28:29 +00:00
py-hcluster Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
py-mdp Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
py-mlpy Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
py-netCDF4 - Convert to dos2unix.mk 2013-11-19 23:08:44 +00:00
py-obspy Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
py-paida Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
py-pupynere Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
py-pydap science/py-pydap: Implementation of the Opendap/DODS protocol 2013-10-30 15:51:04 +00:00
py-pydicom Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
py-scikit-learn Use PYDISTUTILS_AUTOPLIST. 2013-11-05 12:37:28 +00:00
py-scimath - Update WWW: 2013-11-20 20:51:25 +00:00
py-scipy - Fix distinfo 2013-11-18 15:36:42 +00:00
py-ws2300 Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
pybrain Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
pycdf Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
pynn Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
pyteomics - Update to 2.2.0 2013-11-18 14:57:05 +00:00
pyteomics.biolccc - Update WWW: 2013-11-20 20:51:25 +00:00
qcl - Update to version 0.6.3 2013-10-30 17:57:33 +00:00
qtresistors - Convert to USES=qmake (and other USES while I'm here) 2013-11-22 12:55:00 +00:00
R-cran-AMORE Update math/R to 3.0.2 patched r64207 and math/R-cran-SuppDists to 1.1-9.1; 2013-11-13 08:19:34 +00:00
R-cran-bayesm Update math/R to 3.0.2 patched r64207 and math/R-cran-SuppDists to 1.1-9.1; 2013-11-13 08:19:34 +00:00
R-cran-DCluster Update math/R to 3.0.2 patched r64207 and math/R-cran-SuppDists to 1.1-9.1; 2013-11-13 08:19:34 +00:00
R-cran-e1071 Update math/R to 3.0.2 patched r64207 and math/R-cran-SuppDists to 1.1-9.1; 2013-11-13 08:19:34 +00:00
R-cran-eco Update math/R to 3.0.2 patched r64207 and math/R-cran-SuppDists to 1.1-9.1; 2013-11-13 08:19:34 +00:00
R-cran-Epi Update math/R to 3.0.2 patched r64207 and math/R-cran-SuppDists to 1.1-9.1; 2013-11-13 08:19:34 +00:00
R-cran-epicalc Update math/R to 3.0.2 patched r64207 and math/R-cran-SuppDists to 1.1-9.1; 2013-11-13 08:19:34 +00:00
R-cran-snow Update math/R to 3.0.2 patched r64207 and math/R-cran-SuppDists to 1.1-9.1; 2013-11-13 08:19:34 +00:00
R-cran-som Update math/R to 3.0.2 patched r64207 and math/R-cran-SuppDists to 1.1-9.1; 2013-11-13 08:19:34 +00:00
ruby-dcl Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
ruby-gphys Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
ruby-netcdf Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
rubygem-ai4r - Add stage support 2013-10-30 02:56:33 +00:00
silo Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
simlib - Update to 3.02 2013-09-21 11:02:36 +00:00
step Add my upstream commit that fixes the build with libc++. 2013-11-03 22:48:12 +00:00
svmlight Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
szip Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
udunits - Strip shared library 2013-10-10 14:32:08 +00:00
v_sim Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
veusz Update to libmpc version 1.0.1 which brings the following fixes: 2013-10-26 00:52:33 +00:00
vmd Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
voro++ Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
x11iraf Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
xfce4-equake-plugin - Update MASTER_SITES macro, xfce4-equake-plugin is now hosted on 2013-10-31 17:11:01 +00:00
xmakemol Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
xmds Add NO_STAGE all over the place in preparation for the staging support (cat: science) 2013-09-20 22:48:30 +00:00
Makefile science/py-pydap: Implementation of the Opendap/DODS protocol 2013-10-30 15:51:04 +00:00