Sunpoet Po-Chuan Hsieh 1b255e1ef8 Update to 5.19.0 ... Changes: https://github.com/sbmlteam/libsbml/releases		2020-12-10 21:30:19 +00:00
..
abyss
artemis
avida
babel
bamtools
bcftools	biology/bcftools: Upgrade to 1.11	2020-11-05 20:34:03 +00:00
bedtools
bioawk
biococoa
bolt-lmm
bowtie
bowtie2	biology/bowtie2: Upgrade to 2.4.2	2020-11-07 13:47:41 +00:00
bwa
canu
cd-hit
cdbfasta
checkm
clustal-omega
clustalw
cufflinks
cytoscape
ddocent
diamond	biology/diamond: Update to version 2.0.5	2020-12-01 22:27:24 +00:00
dsr-pdb
emboss
exonerate
fasta
fasta3
fastahack
fastdnaml
fastool
fastp
fastqc
fasttree
fastx-toolkit
figtree	Add education virtual category	2020-11-20 07:16:06 +00:00
fluctuate
freebayes
garlic
gatk
gcta	biology/gcta: Switch eigen3 dep to USES framework	2020-11-08 14:31:00 +00:00
gemma
gff2ps
gmap
gperiodic
graphlan
grappa
groopm
hhsuite
hisat2
hmmer
htslib	biology/htslib: Upgrade to 1.11.0	2020-11-05 20:30:50 +00:00
hyphy	biology/hyphy: Update to version 2.5.23	2020-11-19 10:53:55 +00:00
igv	biology/igv: Fix fetch by fixing a small left-over mistake	2020-11-30 17:29:48 +00:00
infernal
iolib
iqtree
jalview
jellyfish
kallisto
lagan
lamarc
libbigwig
libgtextutils
libsbml	Update to 5.19.0	2020-12-10 21:30:19 +00:00
linux-foldingathome
mafft
mapm3
migrate
minimap2
molden
mopac
mothur	biology/mothur: fix build on powerpc64le	2020-10-19 10:30:11 +00:00
mrbayes
mummer	biology/mummer: fix build on powerpc64 elfv2 and powerpc64le	2020-10-25 23:03:14 +00:00
muscle
ncbi-blast+	biology/ncbi-blast+: Upgrade to 2.11.0	2020-11-16 18:25:03 +00:00
ncbi-cxx-toolkit
ncbi-toolkit
ngs-sdk
p5-AcePerl
p5-Bio-ASN1-EntrezGene
p5-Bio-Cluster
p5-Bio-Coordinate
p5-Bio-Das
p5-Bio-Das-Lite
p5-Bio-DB-EMBL
p5-Bio-DB-NCBIHelper
p5-Bio-FeatureIO
p5-Bio-GFF3
p5-Bio-Glite
p5-Bio-Graphics
p5-Bio-MAGETAB
p5-Bio-NEXUS
p5-Bio-Phylo
p5-Bio-SCF
p5-Bio-Variation
p5-BioPerl
p5-BioPerl-Run
p5-transdecoder
p5-TrimGalore
paml
pbbam
pbseqan
pear-merger
phrap
phred
phylip
phyml
picard-tools
plink
pooler	biology/pooler: Optimise DNA sequencing primer-set combinations	2020-11-15 18:50:17 +00:00
primer3
prodigal
prodigy-lig
protomol
psi88
py-biom-format
py-biopython
py-bx-python
py-cutadapt
py-dnaio
py-ete3	Update Qt/PySide2 to 5.15.2 / PyQt to 5.15.1 / SIP to 5.4.0	2020-12-08 20:03:07 +00:00
py-fastTSNE
py-Genesis-PyAPI
py-gffutils
py-gtfparse
py-hits
py-loompy
py-macs2
py-multiqc
py-orange3-bioinformatics
py-orange3-single-cell
py-pandas-charm
py-pyfaidx
py-pysam	biology/py-pysam: Update 0.16.0 -> 0.16.0.1	2020-11-15 19:26:37 +00:00
py-scikit-bio	Add education virtual category	2020-11-20 07:16:06 +00:00
py-xenaPython	biology/py-xenaPython: Update 1.0.10 -> 1.0.14	2020-11-11 05:27:43 +00:00
pyfasta
python-nexus
rainbow
recombine
ruby-bio
rubygem-bio
rubygem-bio-executables
rubygem-bio-old-biofetch-emulator
rubygem-bio-shell
samtools	biology/samtools: Upgrade to 1.11	2020-11-05 20:32:39 +00:00
scrm
seaview
seqan
seqan1
seqan-apps
seqio
seqtk
sim4
slclust
smithwaterman
stacks
star
stringtie
subread
tabixpp	biology/tabixpp: fix build on GCC architectures	2020-11-23 16:13:15 +00:00
treekin
treepuzzle
trimadap
trimmomatic
tRNAscan-SE
ugene
vcflib
vcftools
velvet
viennarna	biology/viennarna: Update 2.4.16 -> 2.4.17	2020-12-06 20:14:53 +00:00
vsearch
vt	biology/vt: Fix build with htslib 1.11	2020-11-09 00:35:58 +00:00
wise
Makefile	biology/pooler: Optimise DNA sequencing primer-set combinations	2020-11-15 18:50:17 +00:00