2015-10-26 00:56:00 +00:00
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;;; ob-awk.el --- Babel Functions for Awk -*- lexical-binding: t; -*-
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2011-05-26 13:28:30 +00:00
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2024-01-02 01:47:10 +00:00
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;; Copyright (C) 2011-2024 Free Software Foundation, Inc.
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2011-05-26 13:28:30 +00:00
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;; Author: Eric Schulte
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2021-05-08 07:40:23 +00:00
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;; Maintainer: Tyler Smith <tyler@plantarum.ca>
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2011-05-26 13:28:30 +00:00
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;; Keywords: literate programming, reproducible research
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2021-09-26 07:44:29 +00:00
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;; URL: https://orgmode.org
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2011-05-26 13:28:30 +00:00
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;; This file is part of GNU Emacs.
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;; GNU Emacs is free software: you can redistribute it and/or modify
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;; it under the terms of the GNU General Public License as published by
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;; the Free Software Foundation, either version 3 of the License, or
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;; (at your option) any later version.
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;; GNU Emacs is distributed in the hope that it will be useful,
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;; but WITHOUT ANY WARRANTY; without even the implied warranty of
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;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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;; GNU General Public License for more details.
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;; You should have received a copy of the GNU General Public License
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2017-09-13 22:52:52 +00:00
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;; along with GNU Emacs. If not, see <https://www.gnu.org/licenses/>.
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2011-05-26 13:28:30 +00:00
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;;; Commentary:
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2011-07-24 10:28:35 +00:00
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;; Babel's awk can use special header argument:
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2012-03-19 20:38:12 +00:00
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;;
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2011-05-26 13:28:30 +00:00
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;; - :in-file takes a path to a file of data to be processed by awk
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2012-03-19 20:38:12 +00:00
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;;
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2016-08-23 20:13:56 +00:00
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;; - :stdin takes an Org data or code block reference, the value of
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;; which will be passed to the awk process through STDIN
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2011-05-26 13:28:30 +00:00
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;;; Code:
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2022-08-04 13:53:05 +00:00
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(require 'org-macs)
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(org-assert-version)
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2011-05-26 13:28:30 +00:00
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(require 'ob)
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2012-07-19 04:11:36 +00:00
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(require 'org-compat)
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2011-05-26 13:28:30 +00:00
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(declare-function org-babel-ref-resolve "ob-ref" (ref))
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(declare-function orgtbl-to-generic "org-table" (table params))
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2011-06-21 22:34:41 +00:00
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(defvar org-babel-tangle-lang-exts)
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2011-05-26 13:28:30 +00:00
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(add-to-list 'org-babel-tangle-lang-exts '("awk" . "awk"))
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(defvar org-babel-awk-command "awk"
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"Name of the awk executable command.")
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2023-10-19 08:57:33 +00:00
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(defun org-babel-expand-body:awk (body params)
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2011-05-26 13:28:30 +00:00
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"Expand BODY according to PARAMS, return the expanded body."
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2023-10-19 08:57:33 +00:00
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(let ((prologue (cdr (assq :prologue params)))
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(epilogue (cdr (assq :epilogue params))))
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(concat
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(and prologue (concat prologue "\n"))
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body
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(and epilogue (concat "\n" epilogue "\n")))))
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2011-05-26 13:28:30 +00:00
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(defun org-babel-execute:awk (body params)
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2023-07-31 11:17:22 +00:00
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"Execute a block of Awk code BODY with org-babel.
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PARAMS is a plist of src block parameters .
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2019-09-20 22:27:53 +00:00
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This function is called by `org-babel-execute-src-block'."
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2022-10-06 11:43:46 +00:00
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(message "Executing Awk source code block")
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2016-09-22 17:45:15 +00:00
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(let* ((result-params (cdr (assq :result-params params)))
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(cmd-line (cdr (assq :cmd-line params)))
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(in-file (cdr (assq :in-file params)))
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2011-05-26 13:28:30 +00:00
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(full-body (org-babel-expand-body:awk body params))
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Backport changes from Emacs revs 115081 and 115082
2013-11-12 Stefan Monnier <monnier@iro.umontreal.ca>
Address some byte-compiler warnings.
* ob-abc.el (org-babel-expand-body:abc): Use dolist.
(org-babel-execute:abc): Fix regexp quoting.
* ob-calc.el (org--var-syms): Rename from `var-syms'.
* ob-lilypond.el (ly-compile-lilyfile): Remove redundant let-binding.
* ob-table.el (sbe): Move debug declaration.
* org-clock.el (org--msg-extra): Rename from `msg-extra'.
* org.el (org-version): Avoid var name starting with _.
(org-inhibit-startup, org-called-with-limited-levels)
(org-link-search-inhibit-query, org-time-was-given)
(org-end-time-was-given, org-def, org-defdecode, org-with-time):
* org-colview.el (org-agenda-overriding-columns-format):
* org-agenda.el (org-agenda-multi, org-depend-tag-blocked)
(org-agenda-show-log-scoped):
* ob-python.el (py-which-bufname, python-shell-buffer-name):
* ob-haskell.el (org-export-copy-to-kill-ring):
* ob-exp.el (org-link-search-inhibit-query):
* ob-R.el (ess-eval-visibly-p):
* ob-core.el (org-src-window-setup): Declare before use.
(org-babel-expand-noweb-references): Remove unused `blocks-in-buffer'.
* ox-odt.el (org-odt-hfy-face-to-css):
* org-src.el (org-src-associate-babel-session, org-src-get-lang-mode):
* org-bibtex.el (org-bibtex-get, org-bibtex-ask, org-bibtex)
(org-bibtex-check):
* ob-tangle.el (org-babel-tangle, org-babel-spec-to-string)
(org-babel-tangle-single-block, org-babel-tangle-comment-links):
* ob-table.el (sbe):
* ob-sqlite.el (org-babel-sqlite-expand-vars):
* ob-sql.el (org-babel-sql-expand-vars):
* ob-shen.el (org-babel-execute:shen):
* ob-sh.el (org-babel-execute:sh, org-babel-sh-evaluate):
* ob-scala.el (org-babel-scala-evaluate):
* ob-ruby.el (org-babel-ruby-table-or-string)
(org-babel-ruby-evaluate):
* ob-python.el (org-babel-python-table-or-string)
(org-babel-python-evaluate-external-process)
(org-babel-python-evaluate-session):
* ob-picolisp.el (org-babel-execute:picolisp):
* ob-perl.el (org-babel-perl-evaluate):
* ob-maxima.el (org-babel-execute:maxima):
* ob-lisp.el (org-babel-execute:lisp):
* ob-java.el (org-babel-execute:java):
* ob-io.el (org-babel-io-evaluate):
* ob-haskell.el (org-babel-execute:haskell):
* ob-fortran.el (org-babel-execute:fortran):
* ob-exp.el (org-babel-exp-code):
* ob-emacs-lisp.el (org-babel-execute:emacs-lisp):
* ob-ditaa.el (org-babel-execute:ditaa):
* ob-core.el (org-babel-execute-src-block, org-babel-sha1-hash)
(org-babel-parse-header-arguments, org-babel-reassemble-table)
(org-babel-goto-src-block-head, org-babel-mark-block)
(org-babel-expand-noweb-references, org-babel-script-escape)
(org-babel-process-file-name):
* ob-clojure.el (org-babel-execute:clojure):
* ob-calc.el (org-babel-execute:calc):
* ob-awk.el (org-babel-execute:awk):
* ob-abc.el (org-babel-execute:abc):
* ob-R.el (org-babel-expand-body:R):
* ob-C.el (org-babel-C-execute): Avoid deprecated ((lambda) ...).
2013-11-12 Glenn Morris <rgm@gnu.org>
* ox-html.el (org-html-scripts): Add 2013 to copyright years.
(org-html-infojs-template): Copyright holder to FSF.
2013-11-12 19:57:31 +00:00
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(code-file (let ((file (org-babel-temp-file "awk-")))
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(with-temp-file file (insert full-body)) file))
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2016-09-22 17:45:15 +00:00
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(stdin (let ((stdin (cdr (assq :stdin params))))
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2021-09-29 07:22:47 +00:00
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(when stdin
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(let ((tmp (org-babel-temp-file "awk-stdin-"))
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(res (org-babel-ref-resolve stdin)))
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(with-temp-file tmp
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(insert (org-babel-awk-var-to-awk res)))
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tmp))))
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2014-06-06 16:50:14 +00:00
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(cmd (mapconcat #'identity
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2014-06-06 17:11:46 +00:00
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(append
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(list org-babel-awk-command
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"-f" code-file cmd-line)
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(mapcar (lambda (pair)
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2014-06-07 15:14:03 +00:00
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(format "-v %s='%s'"
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2015-11-07 20:25:42 +00:00
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(car pair)
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2014-06-07 15:14:03 +00:00
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(org-babel-awk-var-to-awk
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2015-11-07 20:25:42 +00:00
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(cdr pair))))
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2015-10-29 19:26:11 +00:00
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(org-babel--get-vars params))
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2014-06-06 17:11:46 +00:00
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(list in-file))
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2011-05-26 13:28:30 +00:00
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" ")))
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(org-babel-reassemble-table
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Backport changes from Emacs revs 115081 and 115082
2013-11-12 Stefan Monnier <monnier@iro.umontreal.ca>
Address some byte-compiler warnings.
* ob-abc.el (org-babel-expand-body:abc): Use dolist.
(org-babel-execute:abc): Fix regexp quoting.
* ob-calc.el (org--var-syms): Rename from `var-syms'.
* ob-lilypond.el (ly-compile-lilyfile): Remove redundant let-binding.
* ob-table.el (sbe): Move debug declaration.
* org-clock.el (org--msg-extra): Rename from `msg-extra'.
* org.el (org-version): Avoid var name starting with _.
(org-inhibit-startup, org-called-with-limited-levels)
(org-link-search-inhibit-query, org-time-was-given)
(org-end-time-was-given, org-def, org-defdecode, org-with-time):
* org-colview.el (org-agenda-overriding-columns-format):
* org-agenda.el (org-agenda-multi, org-depend-tag-blocked)
(org-agenda-show-log-scoped):
* ob-python.el (py-which-bufname, python-shell-buffer-name):
* ob-haskell.el (org-export-copy-to-kill-ring):
* ob-exp.el (org-link-search-inhibit-query):
* ob-R.el (ess-eval-visibly-p):
* ob-core.el (org-src-window-setup): Declare before use.
(org-babel-expand-noweb-references): Remove unused `blocks-in-buffer'.
* ox-odt.el (org-odt-hfy-face-to-css):
* org-src.el (org-src-associate-babel-session, org-src-get-lang-mode):
* org-bibtex.el (org-bibtex-get, org-bibtex-ask, org-bibtex)
(org-bibtex-check):
* ob-tangle.el (org-babel-tangle, org-babel-spec-to-string)
(org-babel-tangle-single-block, org-babel-tangle-comment-links):
* ob-table.el (sbe):
* ob-sqlite.el (org-babel-sqlite-expand-vars):
* ob-sql.el (org-babel-sql-expand-vars):
* ob-shen.el (org-babel-execute:shen):
* ob-sh.el (org-babel-execute:sh, org-babel-sh-evaluate):
* ob-scala.el (org-babel-scala-evaluate):
* ob-ruby.el (org-babel-ruby-table-or-string)
(org-babel-ruby-evaluate):
* ob-python.el (org-babel-python-table-or-string)
(org-babel-python-evaluate-external-process)
(org-babel-python-evaluate-session):
* ob-picolisp.el (org-babel-execute:picolisp):
* ob-perl.el (org-babel-perl-evaluate):
* ob-maxima.el (org-babel-execute:maxima):
* ob-lisp.el (org-babel-execute:lisp):
* ob-java.el (org-babel-execute:java):
* ob-io.el (org-babel-io-evaluate):
* ob-haskell.el (org-babel-execute:haskell):
* ob-fortran.el (org-babel-execute:fortran):
* ob-exp.el (org-babel-exp-code):
* ob-emacs-lisp.el (org-babel-execute:emacs-lisp):
* ob-ditaa.el (org-babel-execute:ditaa):
* ob-core.el (org-babel-execute-src-block, org-babel-sha1-hash)
(org-babel-parse-header-arguments, org-babel-reassemble-table)
(org-babel-goto-src-block-head, org-babel-mark-block)
(org-babel-expand-noweb-references, org-babel-script-escape)
(org-babel-process-file-name):
* ob-clojure.el (org-babel-execute:clojure):
* ob-calc.el (org-babel-execute:calc):
* ob-awk.el (org-babel-execute:awk):
* ob-abc.el (org-babel-execute:abc):
* ob-R.el (org-babel-expand-body:R):
* ob-C.el (org-babel-C-execute): Avoid deprecated ((lambda) ...).
2013-11-12 Glenn Morris <rgm@gnu.org>
* ox-html.el (org-html-scripts): Add 2013 to copyright years.
(org-html-infojs-template): Copyright holder to FSF.
2013-11-12 19:57:31 +00:00
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(let ((results
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(cond
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(stdin (with-temp-buffer
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(call-process-shell-command cmd stdin (current-buffer))
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(buffer-string)))
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(t (org-babel-eval cmd "")))))
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(when results
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(org-babel-result-cond result-params
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results
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(let ((tmp (org-babel-temp-file "awk-results-")))
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(with-temp-file tmp (insert results))
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(org-babel-import-elisp-from-file tmp)))))
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2011-05-26 13:28:30 +00:00
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(org-babel-pick-name
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2016-09-22 17:45:15 +00:00
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(cdr (assq :colname-names params)) (cdr (assq :colnames params)))
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2011-05-26 13:28:30 +00:00
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(org-babel-pick-name
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2016-09-22 17:45:15 +00:00
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(cdr (assq :rowname-names params)) (cdr (assq :rownames params))))))
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2011-05-26 13:28:30 +00:00
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(defun org-babel-awk-var-to-awk (var &optional sep)
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2023-07-31 11:17:22 +00:00
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"Return a printed value of VAR suitable for parsing with awk.
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SEP, when non-nil is a separator used when converting list values to awk
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table."
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2012-08-10 14:05:26 +00:00
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(let ((echo-var (lambda (v) (if (stringp v) v (format "%S" v)))))
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2011-05-26 13:28:30 +00:00
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(cond
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((and (listp var) (listp (car var)))
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2012-08-10 14:05:26 +00:00
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(orgtbl-to-generic var (list :sep (or sep "\t") :fmt echo-var)))
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2011-05-26 13:28:30 +00:00
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((listp var)
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2012-08-10 14:05:26 +00:00
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(mapconcat echo-var var "\n"))
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(t (funcall echo-var var)))))
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2011-05-26 13:28:30 +00:00
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(provide 'ob-awk)
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;;; ob-awk.el ends here
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