I started from the 78ec8e commit then cherry-picked and squashed
commits that have been done in master since then, except the bad
commits that overwrote the tree (in master) with the tree in maint.
This commit also bumps the version number to 7.8.06.
The only "fix" that was made between 78ec8e and the previous commit
is e0072f which has been reported to break stuff.
This fixes a wrong merge that should not have happened:
commit 7e903a merges the master branch into the maint branch,
while we really want to keep the maint branch a bugfix-only
branch.
This commit reverts back the maint branch to its state before
merging the master branch. From there, we will fix remaining
problems with the maint branch (e.g. copyright issues) then
release this maint branch as Org-mode 7.8.05.
Also remove blank lines before the ";;; org*el ends here" declarations.
Having a "Version" header forced us to update every file when releasing a
new version of Org; it also forced us to update every file when merging Org
with Emacs trunk, thus cluttering the diffs between the previously merged
version and the new one with useless information.
Glenn Morris suggested this in emacs-devel:
http://lists.gnu.org/archive/html/emacs-devel/2011-08/msg00322.html
Thanks to Avdi Grimm for suggesting this addition
* lisp/ob-ruby.el (xmp): Declaring this function to appease the
compiler.
(org-babel-execute:ruby): "xmp" result option for outputting
annotated source code.
These languages are capable of writing results to file; for several of
them this is their only mode of operation. These changes cause the
languages to return to ob.el either the computed result, or nil, when
they have written results to file themselves. This is in place of the
previous method of returning the output file name as a string to
ob.el.
* lisp/ob-asymptote.el (org-babel-execute:asymptote): Return nil to
signal that the intended content has been written to file.
* lisp/ob-ditaa.el (org-babel-execute:ditaa): Return nil to signal
that the intended content has been written to file.
* lisp/ob-dot.el (org-babel-execute:dot): Return nil to signal that
the intended content has been written to file.
* lisp/ob-gnuplot.el (org-babel-execute:gnuplot): Return nil to signal
that the intended content has been written to file.
* lisp/ob-latex.el (org-babel-execute:latex): Return nil to signal
that the intended content has been written to file.
* lisp/ob-mscgen.el (org-babel-execute:mscgen): Return nil to
signal that the intended content has been written to file.
* lisp/ob-octave.el (org-babel-execute:octave): Return result; not
name of output file.
* lisp/ob-plantuml.el (org-babel-execute:plantuml): Return nil to
signal that the intended content has been written to file.
* lisp/ob-python.el (org-babel-execute:python): Return result; not
name of output file.
* lisp/ob-ruby.el (org-babel-execute:ruby): Return result; not
name of output file.
* lisp/ob-sass.el (org-babel-execute:sass): Return nil if result has
been written to file
* lisp/ob-python.el (org-babel-python-table-or-string): Using
`org-babel-script-escape' for reading string input from scripting
languages.
* lisp/ob-ruby.el (org-babel-ruby-table-or-string): Using
`org-babel-script-escape' for reading string input from scripting
languages.
* lisp/ob.el (org-babel-script-escape): Using
`org-babel-script-escape' for reading string input from scripting
languages.
* lisp/ob-haskell.el (org-babel-haskell-table-or-string): Using
`org-babel-script-escape' for reading string input from scripting
languages.
* lisp/ob-C.el (org-babel-C-execute): removing call to
org-babel-process-params which should no longer be called from
within a language file
* lisp/ob-R.el (org-babel-execute:R): removing call to
org-babel-process-params which should no longer be called from
within a language file
(org-babel-R-variable-assignments): removing call to
org-babel-process-params which should no longer be called from
within a language file
* lisp/ob-asymptote.el (org-babel-execute:asymptote): removing call to
org-babel-process-params which should no longer be called from
within a language file
* lisp/ob-clojure.el (org-babel-execute:clojure): removing call to
org-babel-process-params which should no longer be called from
within a language file
* lisp/ob-dot.el (org-babel-execute:dot): removing call to
org-babel-process-params which should no longer be called from
within a language file
* lisp/ob-emacs-lisp.el (org-babel-expand-body:emacs-lisp): removing
call to org-babel-process-params which should no longer be called
from within a language file
(org-babel-execute:emacs-lisp): removing call to
org-babel-process-params which should no longer be called from
within a language file
* lisp/ob-haskell.el (org-babel-execute:haskell): removing call to
org-babel-process-params which should no longer be called from
within a language file
* lisp/ob-js.el (org-babel-execute:js): removing call to
org-babel-process-params which should no longer be called from
within a language file
* lisp/ob-lisp.el (org-babel-execute:lisp): removing call to
org-babel-process-params which should no longer be called from
within a language file
* lisp/ob-ocaml.el (org-babel-execute:ocaml): removing call to
org-babel-process-params which should no longer be called from
within a language file
* lisp/ob-octave.el (org-babel-execute:octave): removing call to
org-babel-process-params which should no longer be called from
within a language file
* lisp/ob-perl.el (org-babel-execute:perl): removing call to
org-babel-process-params which should no longer be called from
within a language file
* lisp/ob-python.el (org-babel-execute:python): removing call to
org-babel-process-params which should no longer be called from
within a language file
* lisp/ob-ruby.el (org-babel-execute:ruby): removing call to
org-babel-process-params which should no longer be called from
within a language file
* lisp/ob-scheme.el (org-babel-execute:scheme): removing call to
org-babel-process-params which should no longer be called from
within a language file
* lisp/ob-screen.el (org-babel-execute:screen): removing call to
org-babel-process-params which should no longer be called from
within a language file
(org-babel-prep-session:screen): removing call to
org-babel-process-params which should no longer be called from
within a language file
* lisp/ob-sh.el (org-babel-execute:sh): removing call to
org-babel-process-params which should no longer be called from
within a language file
* lisp/ob-sql.el (org-babel-execute:sql): removing call to
org-babel-process-params which should no longer be called from
within a language file
* ob-haskell.el (org-babel-execute:haskell): Remove reference
to processed params
* ob-clojure.el (org-babel-execute:clojure): Remove reference
to processed params
* ob-R.el (org-babel-execute:R): Remove reference to processed
params
* ob-ruby.el (org-babel-execute:ruby): Use generic expansion
function
(org-babel-prep-session:ruby): Use new variable assignment
function
(org-babel-variable-assignments:ruby): New function
(org-babel-expand-body:ruby): Delete function
* lisp/ob-clojure.el (org-babel-prep-session:clojure): purging all
calls to removed org-babel-ref-variables
* lisp/ob-gnuplot.el (org-babel-gnuplot-process-vars): purging all
calls to removed org-babel-ref-variables
* lisp/ob-ruby.el (org-babel-prep-session:ruby): purging all calls to
removed org-babel-ref-variables
* lisp/ob-scheme.el (org-babel-prep-session:scheme): purging all calls
to removed org-babel-ref-variables
* lisp/ob-sqlite.el (org-babel-expand-body:sqlite): purging all calls
to removed org-babel-ref-variables
(org-babel-execute:sqlite): purging all calls to removed
org-babel-ref-variables
* ob-scheme.el (org-babel-execute:scheme): Alter temp file name
* ob-ruby.el (org-babel-ruby-evaluate): Alter temp file name
* ob-python.el (org-babel-python-evaluate-external-process):
Alter temp file name
* ob-perl.el (org-babel-perl-evaluate): Alter temp file name
* ob-octave.el (org-babel-octave-evaluate-session):
Alter temp file name
(org-babel-octave-import-elisp-from-file): Alter temp file name
* ob-ledger.el (org-babel-execute:ledger): Alter temp file name
* ob-gnuplot.el (org-babel-gnuplot-process-vars): Alter temp
file name
(org-babel-execute:gnuplot): Alter temp file name
* ob.el (org-babel-process-file-name): New function
(org-babel-maybe-remote-file): Delete function
* ob-sql.el (org-babel-execute:sql):
Use org-babel-process-file-name
* ob-scheme.el (org-babel-execute:scheme):
Use org-babel-process-file-name
* ob-sass.el (org-babel-execute:sass):
Use org-babel-process-file-name
* ob-ruby.el (org-babel-ruby-evaluate):
Use org-babel-process-file-name
* ob-python.el (org-babel-python-evaluate-external-process):
Use org-babel-process-file-name
(org-babel-python-evaluate-session):
Use org-babel-process-file-name
* ob-plantuml.el (org-babel-execute:plantuml):
Use org-babel-process-file-name
* ob-perl.el (org-babel-perl-evaluate):
Use org-babel-process-file-name
* ob-octave.el (org-babel-octave-evaluate-external-process):
Use org-babel-process-file-name
(org-babel-octave-evaluate-session):
Use org-babel-process-file-name,
don't use org-babel-maybe-remote-file
* ob-lisp.el (org-babel-execute:lisp):
Use org-babel-process-file-name
* ob-ledger.el (org-babel-execute:ledger):
Use org-babel-process-file-name
* ob-js.el (org-babel-execute:js):
Use org-babel-process-file-name
* ob-haskell.el (org-babel-haskell-export-to-lhs):
Use org-babel-process-file-name
* ob-gnuplot.el (org-babel-execute:gnuplot):
Use org-babel-process-file-name
* ob-eval.el (org-babel-eval-read-file): Don't use
org-babel-maybe-remote-file
* ob-dot.el (org-babel-execute:dot):
Use org-babel-process-file-name
* ob-ditaa.el (org-babel-execute:ditaa):
Use org-babel-process-file-name
* ob-clojure.el (org-babel-clojure-evaluate-external-process):
Use org-babel-process-file-name
* ob-asymptote.el (org-babel-execute:asymptote):
Use org-babel-process-file-name
* ob-R.el (org-babel-R-assign-elisp): Don't use
org-babel-maybe-remote-file, use org-babel-process-file-name
(org-babel-R-evaluate-external-process):
Use org-babel-process-file-name
(org-babel-R-evaluate-session):
Use org-babel-process-file-name
* ob-C.el (org-babel-C-execute):
Use org-babel-process-file-name
In addition to passing the file path through `expand-file-name',
tramp-style remote file names are converted to conventional (local)
file paths. The reason is that, if a tramp file name was in use in
emacs, then the shell command will be executing on the remote machine
in question. Further, by default the file name is passed through
`shell-quote-argument'.
* lisp/ob.el (org-babel-temporary-directory): variable to hold the
value of the Babel temporary directory
(org-babel-temp-file): replacement for make-temp-file with cleanup
on exit of Emacs
(org-babel-remove-temporary-directory): cleanup function run on exit
of Emacs
(kill-emacs-hook): now includes babel cleanup function
* lisp/ob-C.el (org-babel-C-execute): using org-babel-temp-file
instead of make-temp-file
* lisp/ob-R.el (org-babel-R-assign-elisp): using `org-babel-temp-file'
instead of `make-temp-file'
(org-babel-R-evaluate-external-process): using `org-babel-temp-file'
instead of `make-temp-file'
(org-babel-R-evaluate-session): using `org-babel-temp-file' instead of
`make-temp-file'
* lisp/ob-asymptote.el (org-babel-execute:asymptote): using
`org-babel-temp-file' instead of `make-temp-file'
* lisp/ob-clojure.el (org-babel-clojure-evaluate-external-process):
using `org-babel-temp-file' instead of `make-temp-file'
* lisp/ob-ditaa.el (org-babel-execute:ditaa): using
`org-babel-temp-file' instead of `make-temp-file'
* lisp/ob-dot.el (org-babel-execute:dot): using `org-babel-temp-file'
instead of `make-temp-file'
* lisp/ob-gnuplot.el (org-babel-gnuplot-process-vars): using
`org-babel-temp-file' instead of `make-temp-file'
(org-babel-execute:gnuplot): using `org-babel-temp-file' instead of
`make-temp-file'
* lisp/ob-haskell.el (org-babel-load-session:haskell): using
`org-babel-temp-file' instead of `make-temp-file'
(org-babel-haskell-export-to-lhs): using `org-babel-temp-file' instead
of `make-temp-file'
* lisp/ob-latex.el (org-babel-execute:latex): using
`org-babel-temp-file' instead of `make-temp-file'
* lisp/ob-ledger.el (org-babel-execute:ledger): using
`org-babel-temp-file' instead of `make-temp-file'
* lisp/ob-lisp.el (org-babel-execute:lisp): using
`org-babel-temp-file' instead of `make-temp-file'
* lisp/ob-octave.el (org-babel-octave-evaluate-external-process):
using `org-babel-temp-file' instead of `make-temp-file'
(org-babel-octave-evaluate-session): using `org-babel-temp-file'
instead of `make-temp-file'
(org-babel-octave-import-elisp-from-file): using `org-babel-temp-file'
instead of `make-temp-file'
* lisp/ob-perl.el (org-babel-perl-evaluate): using
`org-babel-temp-file' instead of `make-temp-file'
* lisp/ob-python.el (org-babel-python-evaluate): using
`org-babel-temp-file' instead of `make-temp-file'
using `org-babel-temp-file' instead of `make-temp-file'
* lisp/ob-ruby.el (org-babel-ruby-evaluate): using
`org-babel-temp-file' instead of `make-temp-file'
using `org-babel-temp-file' instead of `make-temp-file'
* lisp/ob-sass.el (org-babel-execute:sass): using
`org-babel-temp-file' instead of `make-temp-file'
* lisp/ob-sh.el (org-babel-sh-evaluate): using `org-babel-temp-file'
instead of `make-temp-file'
* lisp/ob-sql.el (org-babel-execute:sql): using `org-babel-temp-file'
instead of `make-temp-file'
* lisp/ob-sqlite.el (org-babel-execute:sqlite): using
`org-babel-temp-file' instead of `make-temp-file'
(org-babel-sqlite-expand-vars): using `org-babel-temp-file' instead of
`make-temp-file'
For some reason ob-R refuses to compile when it requires ob-comint.
When (require 'ob-comint) is not included in ob-R.el everything
compiles without error, but warnings are thrown because the
arguments to a macro defined in ob-comint are mis-interpreted as
functions.
When (require 'ob-comint) is added to ob-R.el then it throws errors
complaining that the last argument to a function is nil and should
be a string. I don't understand this error at all and can't fix it.
