* ob-R.el (org-babel-R-write-object-command): New unified R
command for writing results to file
(org-babel-R-wrapper-method): Remove variable
(org-babel-R-wrapper-lastvar): Remove variable
(org-babel-R-evaluate-external-process): Use new R command
(org-babel-R-evaluate-session): Use new R command
* ob-comint.el (org-babel-comint-eval-invisibly-and-wait-for-file): New
function to evaluate code invisibly and block until output file exists.
* ob-R.el (org-babel-R-evaluate-session): Use
`ess-eval-buffer' to evaluate R code in session for :results
value. Write result to file invisibly using new function
`org-babel-comint-eval-invisibly-and-wait-for-file'.
These changes move to using standard ESS code evaluation in R sessions
in the :results value case, which avoids unnecessary output to the
comint buffer. In addition, the R command responsible for writing the
result to file is hidden from the user.
Thanks to Michael Gauland for pointing out this fix
* lisp/ob-plantuml.el (org-babel-execute:plantuml): wrapping in-file
and out-file in shell-quote-argument
* org-docview.el (org-docview-store-link): Use expanded macro to get
current page.
(doc-view-goto-page, image-mode-window-get): Declare functions for
byte compiler.
doc-view mode is not available in Emacs22. We need to use the
expanded form of the macro `doc-view-current-page' at compile-time.
* Makefile (LISPF): adding ob-scheme.el to the makefile
* lisp/ob-scheme.el: very preliminary support for evaluating scheme
code blocks
* lisp/org.el (org-babel-load-languages): adding scheme
I just tried adding :step day to
org-agenda-clockreport-parameter-plist, but then hitting R in the
agenda caused a crash, since org-clocktable-steps expects ts and te to
be strings, though in fact they are Gregorian day numbers.
This patch fixes the problem for me. It's quite ugly, so I don't
expect it to be committed in its current form :) but I hope it serves
as inspiration for someone to figure out the right way to solve this.
* lisp/org-clock.el (org-clocktable-steps): Allow ts and te to be
day numbers.
TINYCHANGE
Thanks to Nick Dokos for pointing out this as a fix to a Babel issue
* lisp/org-macs.el (org-save-outline-visibility): moved from org.el
* lisp/org.el: moved `org-save-outline-visibility' to org-macs.el
Thanks to David Hajage for suggesting this fix
* lisp/ob-org.el (org-babel-default-header-args:org): additional
":results silent" default header argument for org code blocks
this makes it possible to export while not evaluating some code
blocks
* lisp/ob-exp.el (org-babel-exp-do-export): removing hacky ":noeval",
which is now an alias to ":eval no"
* lisp/ob.el (org-babel-confirm-evaluate): ":noeval" is an alias for
":eval no", also no longer throwing errors
(org-babel-header-arg-names): adding both eval and noeval as general
header arguments
(org-babel-execute-src-block): now using the new non-error
confirmation functionality
ob-org has two non-standard header arguments in that it exports it's
results by default and the result type defaults to raw, this ensures
that the body of a begin_src org block exports transparently.
This is a breaking change in that if you are currently using org
code blocks to export org-fontified code you will have to set the
":exports" header argument for org-mode blocks to "code" on a block,
file, language or system-wide basis.
* Makefile (LISPF): adding ob-org.el to the makefile
* lisp/ob-org.el: defines handling of org code blocks
* lisp/ob.el (org-babel-insert-result): now when "org" is a result
type the results are wrapped in an org code block
* Makefile (LISPF): now compiling and installing ob-plantuml.el
* contrib/scripts/.gitignore : ignores the plantuml.jar file, so that
it can be located next to ditaa.jar
* lisp/ob-plantuml.el: adding copyright notice and FSF attribution
(org-plantuml-jar-path): now a defcustom
(org-babel-execute:plantuml): now using org-babel-eval which
displays error messages
* lisp/org.el (org-babel-load-languages): ob-plantuml is now part of
org-babel-load-languages
Thanks to Noorul Islam for pointing out this issue
* lisp/ob.el (org-babel-remove-temporary-directory): the version of
`delete-directory' found in files.el can not be assumed to be
present on all versions, so this copies the recursive behavior of
that command in such a way that all calls to delete-directory will
also work with the built-in internal C implementation of that
function. This is not overly difficult as all elements of the
directory can be assumed to be files.
* lisp/ob.el (org-babel-temporary-directory): variable to hold the
value of the Babel temporary directory
(org-babel-temp-file): replacement for make-temp-file with cleanup
on exit of Emacs
(org-babel-remove-temporary-directory): cleanup function run on exit
of Emacs
(kill-emacs-hook): now includes babel cleanup function
* lisp/ob-C.el (org-babel-C-execute): using org-babel-temp-file
instead of make-temp-file
* lisp/ob-R.el (org-babel-R-assign-elisp): using `org-babel-temp-file'
instead of `make-temp-file'
(org-babel-R-evaluate-external-process): using `org-babel-temp-file'
instead of `make-temp-file'
(org-babel-R-evaluate-session): using `org-babel-temp-file' instead of
`make-temp-file'
* lisp/ob-asymptote.el (org-babel-execute:asymptote): using
`org-babel-temp-file' instead of `make-temp-file'
* lisp/ob-clojure.el (org-babel-clojure-evaluate-external-process):
using `org-babel-temp-file' instead of `make-temp-file'
* lisp/ob-ditaa.el (org-babel-execute:ditaa): using
`org-babel-temp-file' instead of `make-temp-file'
* lisp/ob-dot.el (org-babel-execute:dot): using `org-babel-temp-file'
instead of `make-temp-file'
* lisp/ob-gnuplot.el (org-babel-gnuplot-process-vars): using
`org-babel-temp-file' instead of `make-temp-file'
(org-babel-execute:gnuplot): using `org-babel-temp-file' instead of
`make-temp-file'
* lisp/ob-haskell.el (org-babel-load-session:haskell): using
`org-babel-temp-file' instead of `make-temp-file'
(org-babel-haskell-export-to-lhs): using `org-babel-temp-file' instead
of `make-temp-file'
* lisp/ob-latex.el (org-babel-execute:latex): using
`org-babel-temp-file' instead of `make-temp-file'
* lisp/ob-ledger.el (org-babel-execute:ledger): using
`org-babel-temp-file' instead of `make-temp-file'
* lisp/ob-lisp.el (org-babel-execute:lisp): using
`org-babel-temp-file' instead of `make-temp-file'
* lisp/ob-octave.el (org-babel-octave-evaluate-external-process):
using `org-babel-temp-file' instead of `make-temp-file'
(org-babel-octave-evaluate-session): using `org-babel-temp-file'
instead of `make-temp-file'
(org-babel-octave-import-elisp-from-file): using `org-babel-temp-file'
instead of `make-temp-file'
* lisp/ob-perl.el (org-babel-perl-evaluate): using
`org-babel-temp-file' instead of `make-temp-file'
* lisp/ob-python.el (org-babel-python-evaluate): using
`org-babel-temp-file' instead of `make-temp-file'
using `org-babel-temp-file' instead of `make-temp-file'
* lisp/ob-ruby.el (org-babel-ruby-evaluate): using
`org-babel-temp-file' instead of `make-temp-file'
using `org-babel-temp-file' instead of `make-temp-file'
* lisp/ob-sass.el (org-babel-execute:sass): using
`org-babel-temp-file' instead of `make-temp-file'
* lisp/ob-sh.el (org-babel-sh-evaluate): using `org-babel-temp-file'
instead of `make-temp-file'
* lisp/ob-sql.el (org-babel-execute:sql): using `org-babel-temp-file'
instead of `make-temp-file'
* lisp/ob-sqlite.el (org-babel-execute:sqlite): using
`org-babel-temp-file' instead of `make-temp-file'
(org-babel-sqlite-expand-vars): using `org-babel-temp-file' instead of
`make-temp-file'
Attached is the patch which catch this error and throws meaningful
message.
* lisp/org-habit.el (org-habit-parse-todo): Find sr-days only if
scheduled-repeat is non nil. Use 4th element of the list returned
by (org-heading-components) as habit-entry. Modify the error
message to be more meaningful.
TINYCHANGE
paulusm <paulusm@bigpond.com> writes:
> Hi org-mode people,
>
> Whilst playing with the "shaving" example from
> http://orgmode.org/manual/Tracking-your-habits.html I accidentally put a
> bad character in the SCHEDULED timestamp.
>
> Instead of: "SCHEDULED: <2010-08-26 Thu .+2d/4d>"
> I had: "SCHEDULED: <2010-08-26 Thu .+2nd/4d>"
>
> When trying to view my agenda, I was presented with a blank agenda and Emacs
> very quietly reported:
> "org-habit-duration-to-days: Wrong type argument: stringp, nil"
> which is not really helpful.
>
> Removing the bad character fixes the issue, and I can duplicate the error
> condition as described above.
>
> Perhaps some better error trapping could be done?
>
>
* lisp/ob-latex.el (org-babel-execute:latex): adding new ":fit" and
":border" header arguments which both use the "preview" latex
package to fit the resulting pdf image to the figure.
(org-babel-latex-tex-to-pdf): updated to the latest code from
org-latex.el
* org.el (org-store-link): Return link when invoked non-interactively from
an agenda buffer.
TINYCHANGE
> Summary:
>
> When I trigger a org-capture, with the cursor positioned on a line in
> the agenda buffer, I want the link to the agenda entry to be available
> as an annotation (%a) to the capture process. Currently this is broken.
>
> The enclosed patch fixes this.
>
> Setup:
>
> # file todo.org
> * TODO Talk to someone
> SCHEDULED: <2010-08-23 Mon>
>
> # org-capture-templates
> ("z" "Conversation" entry
> (file+headline "~/conversation.org" "Conversations")
> "** Note taken on %U\n %a\n %?" :prepend t :empty-lines 1)
>
> Steps for reporduction:
>
> 1. Restrict agenda to todo.org
> 2. Do org-agenda
> 3. Place the cursor on the above todo line
> 4. Trigger an org-capture for the above capture entry
>
> Examine the entries in conversation.org before/after the patch is
> applied. Note the absence/presence of the link to the parent todo entry.
>
> * Conversations
>
> ** Note taken on [2010-08-23 Mon 03:58]
> [[file:~/todo.org::*Talk%20to%20someone][Talk to someone]]
>
> ** Note taken on [2010-08-23 Mon 03:42]
>
> Jambunathan K.
* org.el (org-store-link): Storing of links to headlines in indirect
buffers was broken. Fix it.
TINYCHANGE
Summary:
> When org-store-link is invoked on a headline in indirect buffer (as in a
> capture buffer), hyperlink gets created to the file and NOT the
> headline. This is a bug.
>
> The attached patch fixes this.
>
> Setup:
>
> # ~/.emacs
>
> (defun my-conversation-id ()
> (interactive)
>
> (remove-hook 'org-capture-before-finalize-hook 'my-conversation-id)
>
> (let ((org-link-to-org-use-id t))
> (call-interactively 'org-store-link)
> )
> )
>
> # org-capture-templates
>
> ("x" "Conversations" entry
> (file+headline "~/conversation.org" "Conversations")
> "%(progn (add-hook 'org-capture-before-finalize-hook 'my-conversation-id) \"\")** Note taken on %U\n %? " :prepend t :empty-lines 1)
>
> Steps for reproduction:
>
> Trigger org-capture for the above capture entry.
>
> Examine conversation.org before/after the patch is applied. Note the
> absence/presence of IDs for the captured entry.
>
> Check for the stored links using C-c C-l. Note the file/headline links.
>
> # file conversation.org before and after the patch
>
> * Conversations
>
> ** Note taken on [2010-08-23 Mon 04:33]
> :PROPERTIES:
> :ID: 7e1974a6-8fa1-43cf-bef3-2adf37d99130
> :END:
>
> ** Note taken on [2010-08-23 Mon 04:32]
>
> # (org-insert-link) showing stored links before and after the patch
>
> file:~/conversation.org (file:~/conversation.org)
> id:7e1974a6-8fa1-43cf-bef3-2adf37d99130 (Note taken on [2010-08-23 Mon 04:33])
>
Hello!
We need this change to get org-mode compiling with recent XEmacs 21.5. On
previous 21.5 and current 21.4, the problem manifests itself at runtime, not
compile time, like so:
(set-file-modes "/tmp/aidan/foo.el" ?\755)
=> Wrong type argument: integerp, ?í
One old reason to go for the ?\755 syntax instead of the #o755 syntax under
GNU Emacs was to be that older versions of GNU Emacs didn’t support #o755,
but, to my knowledge, every released GNU Emacs since March 2000 has
supported the latter syntax.
Best,
Aidan Kehoe, the XEmacs project.
ChangeLog addition:
2010-08-21 Aidan Kehoe <kehoea@parhasard.net>
* ob-tangle.el (org-babel-tangle): Change the MODE argument to
#'set-file-modes to use integer, not character syntax, avoiding
compile problems with recent XEmacs.
* lisp/org-agenda.el (org-agenda-add-entry-text): Make sure we move
forward even if there is no text to be added.
Adding entry text with org-agenda-add-entry-text-maxlines greater than
0 could result in an infinite loop.
Followed Wes Hardaker's suggestion to make the translation of
newlines more flexible --- instead of making a boolean for
special translation of blank lines, I added the ability to
specify the translation.
Also added a macro for declaring generic translation keywords
with type information and documentation. Hope this will make
the generic translator easier to use.
Followed Wes Hardaker's idea of permitting alternative rewrites for blank
lines, instead of making the blank line handler be a boolean and
hard-wiring a newline character.
Also added a declaration form, with type and documentation options, for the
keywords used in defining a generic export method.
