[python312Packages.]lightgbm: 4.5.0 -> 4.6.0
Diff: https://github.com/microsoft/lightgbm/compare/v4.5.0...v4.6.0 Changelog: https://github.com/microsoft/LightGBM/releases/tag/v4.6.0
This commit is contained in:
Gaetan Lepage
parent
759641ba4c
commit
274e70aa39
@ -1,8 +1,9 @@
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{
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config,
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stdenv,
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lib,
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stdenv,
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config,
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fetchFromGitHub,
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fetchpatch,
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cmake,
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gtest,
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doCheck ? true,
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@ -25,14 +26,14 @@
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R,
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rPackages,
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pandoc,
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python3Packages,
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}:
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assert doCheck -> !mpiSupport;
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assert openclSupport -> !cudaSupport;
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assert cudaSupport -> !openclSupport;
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stdenv.mkDerivation rec {
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pnameBase = "lightgbm";
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stdenv.mkDerivation (finalAttrs: {
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# prefix with r when building the R library
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# The R package build results in a special binary file
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# that contains a subset of the .so file use for the CLI
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@ -45,17 +46,52 @@ stdenv.mkDerivation rec {
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# lgbm = lightgbm.override{rLibrary = true; doCheck = false;}; \
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# in \
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# rWrapper.override{ packages = [ lgbm ]; }"
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pname = lib.optionalString rLibrary "r-" + pnameBase;
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version = "4.5.0";
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pname = lib.optionalString rLibrary "r-" + "lightgbm";
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version = "4.6.0";
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src = fetchFromGitHub {
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owner = "microsoft";
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repo = pnameBase;
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rev = "v${version}";
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repo = "lightgbm";
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tag = "v${finalAttrs.version}";
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fetchSubmodules = true;
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hash = "sha256-nST6+/c3Y4/hqwgEUhx03gWtjxhlmUu1XKDCy2pSsvU=";
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hash = "sha256-vq/TlM87i1GNq0Rpy0OTulT9LF+uvi4PhOUz7ZNeceA=";
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};
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patches = [
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# Fix boost 1.83+ compatibility
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# https://github.com/microsoft/LightGBM/issues/6786
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# Patch taken from https://github.com/conda-forge/lightgbm-feedstock/pull/69
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(fetchpatch {
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name = "fix-boost-sha1";
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url = "https://raw.githubusercontent.com/conda-forge/lightgbm-feedstock/68ca96d25d8a6f7281310a4ad3b8d5cdd01f067b/recipe/patches/0003-boost-sha1.patch";
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hash = "sha256-Hw2YmoduOPri7O1XV2p/3Ny4hC8xq7Jq4zoSuKhVeVQ=";
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})
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];
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# Skip APPLE in favor of linux build for .so files
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postPatch = ''
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export PROJECT_SOURCE_DIR=./
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substituteInPlace CMakeLists.txt \
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--replace-fail "find_package(GTest CONFIG)" "find_package(GTest REQUIRED)" \
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--replace-fail "OpenCL_INCLUDE_DIRS}" "OpenCL_INCLUDE_DIRS}" \
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--replace-fail "elseif(APPLE)" "elseif(APPLESKIP)"
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substituteInPlace \
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external_libs/compute/include/boost/compute/cl.hpp \
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external_libs/compute/include/boost/compute/cl_ext.hpp \
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--replace-fail "include <OpenCL/" "include <CL/"
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substituteInPlace build_r.R \
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--replace-fail "shQuote(normalizePath" "shQuote(type = 'cmd', string = normalizePath" \
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--replace-fail "file.path(getwd(), \"lightgbm_r\")" "'$out/tmp'" \
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--replace-fail \
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"install_args <- c(\"CMD\", \"INSTALL\", \"--no-multiarch\", \"--with-keep.source\", tarball)" \
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"install_args <- c(\"CMD\", \"INSTALL\", \"--no-multiarch\", \"--with-keep.source\", \"-l $out/library\", tarball)"
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# Retry this test in next release. Something fails in the setup, so GTEST_FILTER is not enough
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substituteInPlace CMakeLists.txt \
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--replace-fail "tests/cpp_tests/test_arrow.cpp" ""
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rm tests/cpp_tests/test_arrow.cpp
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'';
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nativeBuildInputs =
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[ cmake ]
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++ lib.optionals stdenv.hostPlatform.isDarwin [ llvmPackages.openmp ]
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@ -84,48 +120,36 @@ stdenv.mkDerivation rec {
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rPackages.R6
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];
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# Skip APPLE in favor of linux build for .so files
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postPatch = ''
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export PROJECT_SOURCE_DIR=./
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substituteInPlace CMakeLists.txt \
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--replace "find_package(GTest CONFIG)" "find_package(GTest REQUIRED)" \
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--replace "OpenCL_INCLUDE_DIRS}" "OpenCL_INCLUDE_DIRS}" \
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--replace "elseif(APPLE)" "elseif(APPLESKIP)"
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substituteInPlace \
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external_libs/compute/include/boost/compute/cl.hpp \
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external_libs/compute/include/boost/compute/cl_ext.hpp \
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--replace "include <OpenCL/" "include <CL/"
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substituteInPlace build_r.R \
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--replace "shQuote(normalizePath" "shQuote(type = 'cmd', string = normalizePath" \
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--replace "file.path(getwd(), \"lightgbm_r\")" "'$out/tmp'" \
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--replace \
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"install_args <- c(\"CMD\", \"INSTALL\", \"--no-multiarch\", \"--with-keep.source\", tarball)" \
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"install_args <- c(\"CMD\", \"INSTALL\", \"--no-multiarch\", \"--with-keep.source\", \"-l $out/library\", tarball)"
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# Retry this test in next release. Something fails in the setup, so GTEST_FILTER is not enough
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rm tests/cpp_tests/test_arrow.cpp
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'';
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cmakeFlags =
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lib.optionals doCheck [ "-DBUILD_CPP_TEST=ON" ]
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++ lib.optionals cudaSupport [
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"-DUSE_CUDA=1"
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"-DCMAKE_CXX_COMPILER=${cudaPackages.backendStdenv.cc}/bin/cc"
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lib.optionals doCheck [
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(lib.cmakeBool "BUILD_CPP_TEST" true)
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]
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++ lib.optionals cudaSupport [
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(lib.cmakeBool "USE_CUDA" true)
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(lib.cmakeFeature "CMAKE_CXX_COMPILER" (lib.getExe cudaPackages.backendStdenv.cc))
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]
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++ lib.optionals openclSupport [
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(lib.cmakeBool "USE_GPU" true)
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]
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++ lib.optionals mpiSupport [
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(lib.cmakeBool "USE_MPI" true)
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]
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++ lib.optionals openclSupport [ "-DUSE_GPU=ON" ]
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++ lib.optionals mpiSupport [ "-DUSE_MPI=ON" ]
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++ lib.optionals hdfsSupport [
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"-DUSE_HDFS=ON"
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"-DHDFS_LIB=${hadoop}/lib/hadoop-${hadoop.version}/lib/native/libhdfs.so"
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"-DHDFS_INCLUDE_DIR=${hadoop}/lib/hadoop-${hadoop.version}/include"
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(lib.cmakeBool "USE_HDFS" true)
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(lib.cmakeFeature "HDFS_LIB" "${hadoop}/lib/hadoop-${hadoop.version}/lib/native/libhdfs.so")
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(lib.cmakeFeature "HDFS_INCLUDE_DIR" "${hadoop}/lib/hadoop-${hadoop.version}/include")
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]
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++ lib.optionals javaWrapper [
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"-DUSE_SWIG=ON"
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(lib.cmakeBool "USE_SWIG" true)
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# RPATH of binary /nix/store/.../bin/... contains a forbidden reference to /build/
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"-DCMAKE_SKIP_BUILD_RPATH=ON"
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(lib.cmakeBool "CMAKE_SKIP_BUILD_RPATH" true)
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]
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++ lib.optionals rLibrary [ "-D__BUILD_FOR_R=ON" ]
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++ lib.optionals pythonLibrary [ "-D__BUILD_FOR_PYTHON=ON" ];
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++ lib.optionals rLibrary [
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(lib.cmakeBool "__BUILD_FOR_R" true)
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]
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++ lib.optionals pythonLibrary [
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(lib.cmakeBool "__BUILD_FOR_PYTHON" true)
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];
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configurePhase = lib.optionals rLibrary ''
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export R_LIBS_SITE="$out/library:$R_LIBS_SITE''${R_LIBS_SITE:+:}"
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@ -182,16 +206,23 @@ stdenv.mkDerivation rec {
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postFixup = lib.optionalString rLibrary ''
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if test -e $out/nix-support/propagated-build-inputs; then
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ln -s $out/nix-support/propagated-build-inputs $out/nix-support/propagated-user-env-packages
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ln -s $out/nix-support/propagated-build-inputs $out/nix-support/propagated-user-env-packages
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fi
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'';
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meta = with lib; {
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passthru = {
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tests = {
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pythonPackage = python3Packages.lightgbm;
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};
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};
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meta = {
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description = "LightGBM is a gradient boosting framework that uses tree based learning algorithms.";
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mainProgram = "lightgbm";
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homepage = "https://github.com/microsoft/LightGBM";
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license = licenses.mit;
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platforms = platforms.unix;
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maintainers = with maintainers; [ nviets ];
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changelog = "https://github.com/microsoft/LightGBM/releases/tag/v${finalAttrs.version}";
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license = lib.licenses.mit;
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platforms = lib.platforms.unix;
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maintainers = with lib.maintainers; [ nviets ];
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};
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}
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})
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@ -2,23 +2,31 @@
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lib,
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config,
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stdenv,
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pkgs,
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buildPythonPackage,
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fetchPypi,
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# build-system
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scikit-build-core,
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# nativeBuildInputs
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cmake,
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ninja,
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pathspec,
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pyproject-metadata,
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scikit-build-core,
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writableTmpDirAsHomeHook,
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# buildInputs
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llvmPackages,
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boost,
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ocl-icd,
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opencl-headers,
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# dependencies
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llvmPackages,
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numpy,
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scipy,
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pythonOlder,
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# optionals
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# optional-dependencies
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cffi,
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dask,
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pandas,
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@ -26,9 +34,6 @@
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scikit-learn,
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# optionals: gpu
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boost,
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ocl-icd,
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opencl-headers,
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gpuSupport ? stdenv.hostPlatform.isLinux && !cudaSupport,
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cudaSupport ? config.cudaSupport,
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cudaPackages,
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@ -38,23 +43,28 @@ assert gpuSupport -> !cudaSupport;
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assert cudaSupport -> !gpuSupport;
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buildPythonPackage rec {
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pname = "lightgbm";
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version = "4.5.0";
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inherit (pkgs.lightgbm)
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pname
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version
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patches
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;
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pyproject = true;
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disabled = pythonOlder "3.7";
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src = fetchPypi {
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inherit pname version;
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hash = "sha256-4c17rwMY1OMIomV1pjpGNfCN+GatNiKp2OPXHZY3obo=";
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hash = "sha256-yxxZcg61aTicC6dNFPUjUbVzr0ifIwAyocnzFPi6t/4=";
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};
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build-system = [
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scikit-build-core
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];
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nativeBuildInputs = [
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cmake
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ninja
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pathspec
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pyproject-metadata
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scikit-build-core
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writableTmpDirAsHomeHook
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] ++ lib.optionals cudaSupport [ cudaPackages.cuda_nvcc ];
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dontUseCmakeConfigure = true;
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@ -71,7 +81,7 @@ buildPythonPackage rec {
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cudaPackages.cuda_cudart
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];
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propagatedBuildInputs = [
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dependencies = [
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numpy
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scipy
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];
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@ -80,10 +90,6 @@ buildPythonPackage rec {
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lib.optionals gpuSupport [ "--config-setting=cmake.define.USE_GPU=ON" ]
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++ lib.optionals cudaSupport [ "--config-setting=cmake.define.USE_CUDA=ON" ];
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postConfigure = ''
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export HOME=$(mktemp -d)
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'';
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optional-dependencies = {
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arrow = [
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cffi
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@ -101,9 +107,7 @@ buildPythonPackage rec {
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scikit-learn = [ scikit-learn ];
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};
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# The pypi package doesn't distribute the tests from the GitHub
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# repository. It contains c++ tests which don't seem to wired up to
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# `make check`.
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# No python tests
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doCheck = false;
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pythonImportsCheck = [ "lightgbm" ];
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