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nextflow: fix long run with slurm

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Nexflow requires userName, that is obtained from $USER.
The nix derivation somehows reset it.
Here we wrap nextflow command to force userName to $USER
at runtime.
This commit is contained in:
Alexis Praga 2025-07-09 23:05:40 +02:00
parent a64a649348
commit fec44452ab
1 changed files with 2 additions and 1 deletions
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pkgs/by-name/ne/nextflow/package.nix
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@ -87,7 +87,8 @@ stdenv.mkDerivation (finalAttrs: {
which which
] ]
} \ } \
--set JAVA_HOME ${openjdk.home} --set JAVA_HOME ${openjdk.home} \
--set NXF_OPTS "-Duser.name=\''${USER}"
''; '';
passthru.tests.default = nixosTests.nextflow; passthru.tests.default = nixosTests.nextflow;