93 lines
2.2 KiB
Nix
93 lines
2.2 KiB
Nix
{
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lib,
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stdenv,
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fetchFromGitHub,
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makeBinaryWrapper,
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replaceVars,
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cmake,
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openjpeg,
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pigz,
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yaml-cpp,
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batchVersion ? false,
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withJpegLs ? true,
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withOpenJpeg ? true,
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withPigz ? true,
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withCloudflareZlib ? true,
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}:
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let
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cloudflareZlib = fetchFromGitHub {
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owner = "ningfei";
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repo = "zlib";
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# HEAD revision of the gcc.amd64 branch on 2025-01-05. Reminder to update
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# whenever bumping package version.
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rev = "1cb075520d254005cde193982f1856b877fd39d8";
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hash = "sha256-1+V7XwYOYqSzcFK86V+gDILGwAqKGQ+HSlXphWtqSvk=";
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};
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in
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stdenv.mkDerivation (finalAttrs: {
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version = "1.0.20241211";
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pname = "dcm2niix";
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src = fetchFromGitHub {
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owner = "rordenlab";
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repo = "dcm2niix";
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tag = "v${finalAttrs.version}";
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hash = "sha256-NpvtMCcyVfYlnvXjyvTDsa71IxUhi8FepX82qRSG7TA=";
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};
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patches = lib.optionals withCloudflareZlib [
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(replaceVars ./dont-fetch-external-libs.patch {
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inherit cloudflareZlib;
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})
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];
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nativeBuildInputs = [
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cmake
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makeBinaryWrapper
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];
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buildInputs =
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lib.optionals batchVersion [ yaml-cpp ]
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++ lib.optionals withOpenJpeg [
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openjpeg
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openjpeg.dev
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];
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cmakeFlags =
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lib.optionals batchVersion [
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"-DBATCH_VERSION=ON"
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"-DYAML-CPP_DIR=${yaml-cpp}/lib/cmake/yaml-cpp"
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]
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++ lib.optionals withJpegLs [
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"-DUSE_JPEGLS=ON"
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]
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++ lib.optionals withOpenJpeg [
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"-DUSE_OPENJPEG=ON"
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"-DOpenJPEG_DIR=${openjpeg}/lib/${openjpeg.pname}-${lib.versions.majorMinor openjpeg.version}"
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]
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++ lib.optionals withCloudflareZlib [
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"-DZLIB_IMPLEMENTATION=Cloudflare"
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];
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postInstall = lib.optionalString withPigz ''
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wrapProgram $out/bin/dcm2niix --prefix PATH : "${lib.makeBinPath [ pigz ]}"
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'';
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meta = {
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description = "DICOM to NIfTI converter";
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mainProgram = "dcm2niix";
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longDescription = ''
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dcm2niix is designed to convert neuroimaging data from the DICOM format to the NIfTI format.
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'';
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homepage = "https://www.nitrc.org/projects/dcm2nii";
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changelog = "https://github.com/rordenlab/dcm2niix/releases/tag/v${finalAttrs.version}";
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license = lib.licenses.bsd3;
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maintainers = with lib.maintainers; [
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ashgillman
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rbreslow
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];
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platforms = lib.platforms.all;
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};
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})
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