56 lines
1.2 KiB
Nix
56 lines
1.2 KiB
Nix
{
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lib,
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stdenv,
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fetchurl,
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gcc,
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zlib,
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python3,
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}:
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stdenv.mkDerivation rec {
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pname = "ecopcr";
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version = "1.0.1";
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src = fetchurl {
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url = "https://git.metabarcoding.org/obitools/ecopcr/-/archive/ecopcr_v${version}/ecopcr-ecopcr_v${version}.tar.gz";
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hash = "sha256-ssvWpi7HuuRRAkpqqrX3ijLuBqM3QsrmrG+t7/m6fZA=";
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};
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patches = [
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./gcc14.patch
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];
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buildInputs = [
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gcc
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python3
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zlib
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];
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preConfigure = ''
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cd src
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'';
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installPhase = ''
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mkdir -p $out/bin
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cp -v ecoPCR $out/bin
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cp -v ecogrep $out/bin
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cp -v ecofind $out/bin
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cp -v ../tools/ecoPCRFormat.py $out/bin/ecoPCRFormat
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chmod a+x $out/bin/ecoPCRFormat
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'';
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meta = with lib; {
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description = "Electronic PCR software tool";
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longDescription = ''
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ecoPCR is an electronic PCR software developed by the LECA. It
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helps you estimate Barcode primers quality. In conjunction with
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OBITools, you can postprocess ecoPCR output to compute barcode
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coverage and barcode specificity. New barcode primers can be
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developed using the ecoPrimers software.
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'';
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homepage = "https://git.metabarcoding.org/obitools/ecopcr/wikis/home";
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license = licenses.cecill20;
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maintainers = [ ];
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};
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}
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