102 lines
2.3 KiB
Nix
102 lines
2.3 KiB
Nix
{
|
|
stdenv,
|
|
lib,
|
|
fetchurl,
|
|
makeWrapper,
|
|
autoPatchelfHook,
|
|
jdk11,
|
|
makeDesktopItem,
|
|
copyDesktopItems,
|
|
runtimeShell,
|
|
unzip,
|
|
wrapGAppsHook3,
|
|
}:
|
|
|
|
stdenv.mkDerivation rec {
|
|
pname = "fiji";
|
|
version = "20250408-1717";
|
|
|
|
src = fetchurl {
|
|
url = "https://downloads.imagej.net/fiji/archive/${version}/fiji-nojre.zip";
|
|
sha256 = "sha256-bqVrTBKII58E7WSlQfRPE0Dxd4h/oJALFvIOdAAFZoI=";
|
|
};
|
|
|
|
dontBuild = true;
|
|
|
|
nativeBuildInputs = [
|
|
autoPatchelfHook
|
|
wrapGAppsHook3
|
|
makeWrapper
|
|
copyDesktopItems
|
|
unzip
|
|
];
|
|
|
|
buildInputs = [ (lib.getLib stdenv.cc.cc) ];
|
|
|
|
desktopItems = [
|
|
(makeDesktopItem {
|
|
name = "fiji";
|
|
exec = "fiji %F";
|
|
tryExec = "fiji";
|
|
icon = "fiji";
|
|
mimeTypes = [ "image/*" ];
|
|
comment = "Scientific Image Analysis";
|
|
desktopName = "Fiji Is Just ImageJ";
|
|
genericName = "Fiji Is Just ImageJ";
|
|
categories = [
|
|
"Education"
|
|
"Science"
|
|
"ImageProcessing"
|
|
];
|
|
startupNotify = true;
|
|
startupWMClass = "fiji-Main";
|
|
})
|
|
];
|
|
|
|
dontWrapGApps = true;
|
|
|
|
installPhase = ''
|
|
runHook preInstall
|
|
|
|
mkdir -p $out/{bin,fiji,share/pixmaps}
|
|
|
|
cp -R * $out/fiji
|
|
rm -f $out/fiji/jars/imagej-updater-*.jar
|
|
|
|
# Don't create a local desktop entry and avoid deprecated garbage
|
|
# collection option
|
|
cat <<EOF > $out/bin/.fiji-launcher-hack
|
|
#!${runtimeShell}
|
|
exec \$($out/fiji/ImageJ-linux64 --default-gc --dry-run "\$@")
|
|
EOF
|
|
chmod +x $out/bin/.fiji-launcher-hack
|
|
|
|
makeWrapper $out/bin/.fiji-launcher-hack $out/bin/fiji \
|
|
--prefix PATH : ${lib.makeBinPath [ jdk11 ]} \
|
|
--set JAVA_HOME ${jdk11.home} \
|
|
''${gappsWrapperArgs[@]}
|
|
|
|
ln $out/fiji/images/icon.png $out/share/pixmaps/fiji.png
|
|
|
|
runHook postInstall
|
|
'';
|
|
|
|
meta = with lib; {
|
|
homepage = "https://imagej.net/software/fiji/";
|
|
description = "Batteries-included distribution of ImageJ2, bundling a lot of plugins which facilitate scientific image analysis";
|
|
mainProgram = "fiji";
|
|
platforms = [ "x86_64-linux" ];
|
|
sourceProvenance = with sourceTypes; [
|
|
binaryBytecode
|
|
binaryNativeCode
|
|
];
|
|
license = with lib.licenses; [
|
|
gpl2Plus
|
|
gpl3Plus
|
|
bsd2
|
|
publicDomain
|
|
];
|
|
maintainers = with maintainers; [ davisrichard437 ];
|
|
};
|
|
}
|