a19cd4ffb1
This reverts commit 65a333600d5c88a98d674f637d092807cfc12253. This wasn't tested for correctness with something like fodwatch [0], and should not have been (self-)merged so quickly, especially without further review. It also resulted in the breakage of at least one package [1] (and that's the one we know of and was caught). A few packages that were updated in between this commit and this revert were not reverted back to using `rev`, but other than that, this is a 1:1 revert. [0]: https://codeberg.org/raphaelr/fodwatch [1]: https://github.com/NixOS/nixpkgs/pull/396904 / 758551e4587d75882aebc21a04bee960418f8ce9
54 lines
1.1 KiB
Nix
54 lines
1.1 KiB
Nix
{
|
|
lib,
|
|
stdenv,
|
|
fetchFromGitHub,
|
|
useMpi ? false,
|
|
mpi,
|
|
}:
|
|
|
|
stdenv.mkDerivation rec {
|
|
pname = "RAxML${lib.optionalString useMpi "-mpi"}";
|
|
version = "8.2.13";
|
|
|
|
src = fetchFromGitHub {
|
|
owner = "stamatak";
|
|
repo = "standard-RAxML";
|
|
rev = "v${version}";
|
|
sha256 = "sha256-w+Eqi0GhVira1H6ZnMNeZGBMzDjiGT7JSFpQEVXONyk=";
|
|
};
|
|
|
|
buildInputs = lib.optionals useMpi [ mpi ];
|
|
|
|
# TODO darwin, AVX and AVX2 makefile targets
|
|
buildPhase =
|
|
if useMpi then
|
|
''
|
|
make -f Makefile.MPI.gcc
|
|
''
|
|
else
|
|
''
|
|
make -f Makefile.SSE3.PTHREADS.gcc
|
|
'';
|
|
|
|
installPhase =
|
|
if useMpi then
|
|
''
|
|
mkdir -p $out/bin && cp raxmlHPC-MPI $out/bin
|
|
''
|
|
else
|
|
''
|
|
mkdir -p $out/bin && cp raxmlHPC-PTHREADS-SSE3 $out/bin
|
|
'';
|
|
|
|
meta = with lib; {
|
|
description = "Tool for Phylogenetic Analysis and Post-Analysis of Large Phylogenies";
|
|
license = licenses.gpl3;
|
|
homepage = "https://sco.h-its.org/exelixis/web/software/raxml/";
|
|
maintainers = [ maintainers.unode ];
|
|
platforms = [
|
|
"i686-linux"
|
|
"x86_64-linux"
|
|
];
|
|
};
|
|
}
|