76e2a397c2
This treewide change targets Python packages that specifies pytest flags with pytestFlagsArray, and whose flags cannot be consructed by other pytestCheckHook-honoured arguments. Use the __structuredAttrs-agnostic argument pytestFlags instead of the deprecated pytestFlagsArray. For flags with option arguments, join each flag and their option argument into a single command-line argument following POSIX Utility Argument Syntax[1] for easier overriding (remove/replace). Examples: * [ "-W" "ignore:message:WarningClass" ] -> [ "-Wignore:message:WarningClass" ] * [ "--reruns" "3" ] -> [ "--reruns=3" ] [1]: https://pubs.opengroup.org/onlinepubs/009695399/basedefs/xbd_chap12.html
112 lines
2.2 KiB
Nix
112 lines
2.2 KiB
Nix
{
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lib,
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stdenv,
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buildPythonPackage,
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fetchFromGitHub,
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# build-system
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setuptools,
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# dependencies
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matplotlib,
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numpy,
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pandas,
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requests,
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scikit-learn,
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scipy,
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# tests
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astropy,
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coverage,
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mock,
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plotly,
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pytest-cov-stub,
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pytestCheckHook,
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}:
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buildPythonPackage rec {
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pname = "neurokit2";
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version = "0.2.10";
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pyproject = true;
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src = fetchFromGitHub {
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owner = "neuropsychology";
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repo = "NeuroKit";
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tag = "v${version}";
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hash = "sha256-e/B1JvO6uYZ6iVskFvxZLSSXi0cPep9bBZ0JXZTVS28=";
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};
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postPatch = ''
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substituteInPlace setup.py \
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--replace-fail '"pytest-runner", ' ""
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'';
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build-system = [
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setuptools
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];
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dependencies = [
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matplotlib
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numpy
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pandas
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requests
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scikit-learn
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scipy
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];
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nativeCheckInputs = [
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pytest-cov-stub
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mock
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plotly
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astropy
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coverage
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pytestCheckHook
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];
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disabledTests = lib.optionals stdenv.hostPlatform.isDarwin [
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# Crash in matplotlib (Fatal Python error: Aborted)
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"test_events_plot"
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];
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disabledTestPaths = [
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# Required dependencies not available in nixpkgs
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"tests/tests_bio.py"
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"tests/tests_complexity.py"
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"tests/tests_data.py"
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"tests/tests_ecg.py"
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"tests/tests_ecg_delineate.py"
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"tests/tests_ecg_findpeaks.py"
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"tests/tests_eda.py"
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"tests/tests_eeg.py"
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"tests/tests_emg.py"
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"tests/tests_eog.py"
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"tests/tests_epochs.py"
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"tests/tests_hrv.py"
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"tests/tests_ppg.py"
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"tests/tests_rsp.py"
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"tests/tests_signal.py"
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# Dependency is broken `mne-python`
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"tests/tests_microstates.py"
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];
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pytestFlags = [
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# Otherwise, test collection fails with:
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# AttributeError: module 'scipy.ndimage._delegators' has no attribute '@py_builtins_signature'. Did you mean: 'grey_dilation_signature'?
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# https://github.com/scipy/scipy/issues/22236
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"--assert=plain"
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];
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pythonImportsCheck = [
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"neurokit2"
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];
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meta = {
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description = "Python Toolbox for Neurophysiological Signal Processing";
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homepage = "https://github.com/neuropsychology/NeuroKit";
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changelog = "https://github.com/neuropsychology/NeuroKit/releases/tag/v${version}";
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license = lib.licenses.mit;
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maintainers = with lib.maintainers; [ genga898 ];
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};
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}
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