a19cd4ffb1
This reverts commit 65a333600d5c88a98d674f637d092807cfc12253. This wasn't tested for correctness with something like fodwatch [0], and should not have been (self-)merged so quickly, especially without further review. It also resulted in the breakage of at least one package [1] (and that's the one we know of and was caught). A few packages that were updated in between this commit and this revert were not reverted back to using `rev`, but other than that, this is a 1:1 revert. [0]: https://codeberg.org/raphaelr/fodwatch [1]: https://github.com/NixOS/nixpkgs/pull/396904 / 758551e4587d75882aebc21a04bee960418f8ce9
47 lines
1.1 KiB
Nix
47 lines
1.1 KiB
Nix
{
|
|
lib,
|
|
stdenv,
|
|
fetchFromGitHub,
|
|
zlib,
|
|
bzip2,
|
|
xz,
|
|
}:
|
|
|
|
stdenv.mkDerivation rec {
|
|
pname = "freebayes";
|
|
version = "1.3.1";
|
|
|
|
src = fetchFromGitHub {
|
|
name = "freebayes-${version}-src";
|
|
owner = "ekg";
|
|
repo = "freebayes";
|
|
rev = "v${version}";
|
|
sha256 = "035nriknjqq8gvil81vvsmvqwi35v80q8h1cw24vd1gdyn1x7bys";
|
|
fetchSubmodules = true;
|
|
};
|
|
|
|
buildInputs = [
|
|
zlib
|
|
bzip2
|
|
xz
|
|
];
|
|
|
|
# Workaround build failure on -fno-common toolchains like upstream
|
|
# gcc-10. Otherwise build fails as:
|
|
# ld: foomatic_rip-options.o:/build/foomatic-filters-4.0.17/options.c:49: multiple definition of `cupsfilter';
|
|
# foomatic_rip-foomaticrip.o:/build/foomatic-filters-4.0.17/foomaticrip.c:158: first defined here
|
|
env.NIX_CFLAGS_COMPILE = "-fcommon";
|
|
|
|
installPhase = ''
|
|
install -vD bin/freebayes bin/bamleftalign scripts/* -t $out/bin
|
|
'';
|
|
|
|
meta = with lib; {
|
|
description = "Bayesian haplotype-based polymorphism discovery and genotyping";
|
|
license = licenses.mit;
|
|
homepage = "https://github.com/ekg/freebayes";
|
|
maintainers = with maintainers; [ jdagilliland ];
|
|
platforms = [ "x86_64-linux" ];
|
|
};
|
|
}
|