a19cd4ffb1
This reverts commit 65a333600d5c88a98d674f637d092807cfc12253. This wasn't tested for correctness with something like fodwatch [0], and should not have been (self-)merged so quickly, especially without further review. It also resulted in the breakage of at least one package [1] (and that's the one we know of and was caught). A few packages that were updated in between this commit and this revert were not reverted back to using `rev`, but other than that, this is a 1:1 revert. [0]: https://codeberg.org/raphaelr/fodwatch [1]: https://github.com/NixOS/nixpkgs/pull/396904 / 758551e4587d75882aebc21a04bee960418f8ce9
64 lines
1.2 KiB
Nix
64 lines
1.2 KiB
Nix
{
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lib,
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stdenv,
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fetchFromGitHub,
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unzip,
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which,
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python3,
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perl,
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}:
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stdenv.mkDerivation rec {
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pname = "hisat2";
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version = "2.2.1";
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src = fetchFromGitHub {
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owner = "DaehwanKimLab";
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repo = "hisat2";
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rev = "v${version}";
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sha256 = "0lmzdhzjkvxw7n5w40pbv5fgzd4cz0f9pxczswn3d4cr0k10k754";
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};
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nativeBuildInputs = [
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unzip
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which
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];
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buildInputs = [
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python3
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perl
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];
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installPhase = ''
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mkdir -p $out/bin
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cp hisat2 \
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hisat2-inspect-l \
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hisat2-build-s \
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hisat2-align-l \
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hisat2-inspect \
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hisat2-align-s \
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hisat2-inspect-s \
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hisat2-build-l \
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hisat2-build \
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extract_exons.py \
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extract_splice_sites.py \
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hisat2_extract_exons.py \
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hisat2_extract_snps_haplotypes_UCSC.py \
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hisat2_extract_snps_haplotypes_VCF.py \
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hisat2_extract_splice_sites.py \
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hisat2_simulate_reads.py \
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$out/bin
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'';
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meta = with lib; {
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description = "Graph based aligner";
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license = licenses.gpl3Plus;
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homepage = "https://daehwankimlab.github.io/hisat2/";
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maintainers = with maintainers; [ jbedo ];
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platforms = [
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"x86_64-linux"
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"i686-linux"
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];
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};
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}
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