a19cd4ffb1
This reverts commit 65a333600d5c88a98d674f637d092807cfc12253. This wasn't tested for correctness with something like fodwatch [0], and should not have been (self-)merged so quickly, especially without further review. It also resulted in the breakage of at least one package [1] (and that's the one we know of and was caught). A few packages that were updated in between this commit and this revert were not reverted back to using `rev`, but other than that, this is a 1:1 revert. [0]: https://codeberg.org/raphaelr/fodwatch [1]: https://github.com/NixOS/nixpkgs/pull/396904 / 758551e4587d75882aebc21a04bee960418f8ce9
45 lines
852 B
Nix
45 lines
852 B
Nix
{
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lib,
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stdenv,
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fetchFromGitHub,
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cmake,
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hdf5,
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boost,
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}:
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stdenv.mkDerivation rec {
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pname = "minia";
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version = "3.2.1";
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src = fetchFromGitHub {
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owner = "GATB";
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repo = "minia";
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rev = "v${version}";
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sha256 = "0bmfrywixaaql898l0ixsfkhxjf2hb08ssnqzlzacfizxdp46siq";
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fetchSubmodules = true;
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};
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patches = [ ./no-bundle.patch ];
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env.NIX_CFLAGS_COMPILE = toString [ "-Wformat" ];
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nativeBuildInputs = [ cmake ];
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buildInputs = [
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hdf5
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boost
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];
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prePatch = ''
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rm -rf thirdparty/gatb-core/gatb-core/thirdparty/{hdf5,boost}
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'';
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meta = with lib; {
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description = "Short read genome assembler";
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mainProgram = "minia";
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homepage = "https://github.com/GATB/minia";
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license = licenses.agpl3Plus;
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maintainers = with maintainers; [ jbedo ];
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platforms = [ "x86_64-linux" ];
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};
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}
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