61 lines
1.1 KiB
Nix
61 lines
1.1 KiB
Nix
{
|
|
lib,
|
|
buildPythonPackage,
|
|
fetchFromGitHub,
|
|
glibcLocales,
|
|
importlib-metadata,
|
|
packaging,
|
|
htslib,
|
|
fsspec,
|
|
pytestCheckHook,
|
|
biopython,
|
|
setuptools,
|
|
setuptools-scm,
|
|
}:
|
|
|
|
buildPythonPackage rec {
|
|
pname = "pyfaidx";
|
|
version = "0.8.1.4";
|
|
pyproject = true;
|
|
|
|
src = fetchFromGitHub {
|
|
owner = "mdshw5";
|
|
repo = "pyfaidx";
|
|
tag = "v${version}";
|
|
hash = "sha256-SDnmOJbuYYrg6vUQJTEuiqct9hhspN8B9Tpn8UojKFk=";
|
|
};
|
|
|
|
build-system = [
|
|
setuptools
|
|
setuptools-scm
|
|
];
|
|
|
|
dependencies = [
|
|
importlib-metadata
|
|
packaging
|
|
];
|
|
|
|
nativeCheckInputs = [
|
|
pytestCheckHook
|
|
biopython
|
|
htslib
|
|
fsspec
|
|
glibcLocales
|
|
];
|
|
|
|
pythonImportsCheck = [ "pyfaidx" ];
|
|
|
|
preCheck = ''
|
|
bgzip --keep tests/data/genes.fasta
|
|
'';
|
|
|
|
meta = {
|
|
description = "Python classes for indexing, retrieval, and in-place modification of FASTA files using a samtools compatible index";
|
|
homepage = "https://github.com/mdshw5/pyfaidx";
|
|
changelog = "https://github.com/mdshw5/pyfaidx/releases/tag/${src.tag}";
|
|
license = lib.licenses.bsd3;
|
|
maintainers = with lib.maintainers; [ jbedo ];
|
|
mainProgram = "faidx";
|
|
};
|
|
}
|