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Weijia Wang 1e0d363214
Merge pull request #241136 from r-ryantm/auto-update/veryfasttree 
veryfasttree: 3.1.1 -> 4.0
2023-07-03 17:17:51 +03:00
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angsd
pkgs/applications: replace "${version}" with version
2023-07-02 14:39:50 -04:00
ants
ants: 2.4.3 -> 2.4.4
2023-05-02 12:29:21 -04:00
aragorn
aragorn: fix format
2023-06-08 18:42:29 +09:00
astral
…
bayescan
…
bcftools
…
bedops
bedops: fix build on darwin
2023-04-24 22:11:47 +09:00
bedtools
bedtools: 2.30.0 -> 2.31.0
2023-04-29 03:05:55 +00:00
bftools
…
blast
blast: 2.13.0 -> 2.14.0
2023-05-26 00:23:49 +00:00
bowtie
…
bowtie2
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bppsuite
bppsuite: fix homepage
2023-06-15 12:18:11 -04:00
bwa
bwa: add runHook
2023-05-15 16:13:49 +09:00
cd-hit
…
clustal-omega
…
cmtk
…
conglomerate
…
dcm2niix
…
deeptools
…
delly
…
diamond
diamond: 2.1.7 -> 2.1.8
2023-06-25 04:35:30 +00:00
dssp
dssp: fix format
2023-07-01 16:40:29 +09:00
ecopcr
…
eggnog-mapper
…
emboss
…
est-sfs
…
exonerate
…
EZminc
…
fastp
fastp: 0.23.3 -> 0.23.4
2023-06-04 03:21:21 +00:00
febio-studio
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flywheel-cli
…
freebayes
…
gatk
…
genmap
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hh-suite
hh-suite: init at 3.3.0
2023-04-19 10:32:35 +09:00
hisat2
…
hmmer
…
igv
igv: 2.16.0 -> 2.16.1
2023-05-31 13:33:15 +00:00
inormalize
…
iqtree
iqtree: 2.2.2.4 -> 2.2.2.6
2023-05-30 01:13:17 +00:00
itsx
…
iv
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jbrowse
jbrowse: init at 2.5.0
2023-05-12 11:24:26 -07:00
kalign
kalign: init at 3.3.5
2023-06-14 21:05:58 +09:00
kallisto
…
kent
kent: package headers too.
2023-05-06 19:48:14 +02:00
kssd
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last
last: 1453 -> 1456
2023-06-25 11:01:07 -03:00
macs2
macs2: rename from MACS2
2023-06-13 21:47:47 +00:00
macse
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mafft
mafft: 7.515 -> 7.520
2023-04-12 13:28:24 +09:00
manta
…
megahit
…
meme-suite
…
messer-slim
…
migrate
…
minc-tools
…
minc-widgets
…
minia
…
minimap2
minimap2: 2.25 -> 2.26
2023-05-03 19:38:48 +00:00
mmseqs2
…
mni_autoreg
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mosdepth
mosdepth: 0.3.3 -> 0.3.4
2023-06-28 10:52:42 +00:00
mrbayes
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mrtrix
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muscle
pkgs/applications: replace "${version}" with version
2023-07-02 14:39:50 -04:00
N3
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nest
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neuron
…
niftyreg
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niftyseg
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obitools
…
octopus
…
paml
…
picard-tools
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platypus
…
plink-ng
…
poretools
…
prodigal
…
quast
…
raxml
…
repseek
…
sambamba
…
samblaster
…
samtools
Samtools: 1.13 -> 1.17
2023-04-12 12:00:25 +02:00
seaview
…
seqkit
…
seqtk
seqtk: 1.3 -> 1.4
2023-05-28 06:48:51 +00:00
snpeff
…
somatic-sniper
…
sortmerna
…
spades
…
sratoolkit
…
stacks
…
star
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strelka
…
subread
subread: 2.0.5 -> 2.0.6
2023-05-10 22:30:35 +10:00
sumatools
…
svaba
…
tandem-aligner
tandem-aligner: add changelog to meta
2023-04-19 21:23:21 +09:00
tebreak
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treemix
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trf
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trimal
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truvari
truvari: add patches to fix truvari anno
2023-05-15 10:01:38 +09:00
varscan
varscan: 2.4.5 -> 2.4.6
2023-04-05 14:55:31 +00:00
vcftools
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veryfasttree
veryfasttree: fix build on darwin
2023-07-03 12:29:44 +03:00
whisper
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xenomapper
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