61 lines
1.3 KiB
Nix
61 lines
1.3 KiB
Nix
{
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lib,
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stdenv,
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fetchFromGitHub,
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autoconf,
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cmake,
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hdf5,
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versionCheckHook,
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zlib,
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nix-update-script,
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}:
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stdenv.mkDerivation rec {
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pname = "kallisto";
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version = "0.51.1";
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src = fetchFromGitHub {
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repo = "kallisto";
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owner = "pachterlab";
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rev = "v${version}";
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sha256 = "sha256-hfdeztEyHvuOnLS71oSv8sPqFe2UCX5KlANqrT/Gfx8=";
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};
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nativeBuildInputs = [
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autoconf
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cmake
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];
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buildInputs = [
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hdf5
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zlib
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];
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cmakeFlags = [ "-DUSE_HDF5=ON" ];
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enableParallelBuilding = false;
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nativeInstallCheckInputs = [ versionCheckHook ];
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versionCheckProgramArg = "version";
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doInstallCheck = true;
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passthru.updateScript = nix-update-script { };
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meta = with lib; {
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description = "Near-optimal quantification of transcripts from RNA-seq data";
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longDescription = ''
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kallisto is a program for quantifying abundances of transcripts
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from RNA sequencing data, or more generally of target sequences
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using high-throughput sequencing reads. It is based on the novel
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idea of pseudoalignment for rapidly determining the
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compatibility of reads with targets, without the need for
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alignment.
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'';
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mainProgram = "kallisto";
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homepage = "https://pachterlab.github.io/kallisto";
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license = licenses.bsd2;
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platforms = platforms.linux;
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maintainers = [ maintainers.arcadio ];
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};
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}
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