2001-03-24 21:40:17 +00:00
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# $FreeBSD$
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#
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2001-09-21 05:59:19 +00:00
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2004-04-02 07:29:48 +00:00
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COMMENT = Scientific ports
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2003-07-24 09:50:24 +00:00
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SUBDIR += 2dhf
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2006-09-07 01:24:33 +00:00
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SUBDIR += InsightToolkit
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2004-08-14 08:45:42 +00:00
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SUBDIR += abinit
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2006-01-25 17:34:35 +00:00
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SUBDIR += afni
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2003-09-08 12:45:59 +00:00
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SUBDIR += at
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2002-07-22 06:52:25 +00:00
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SUBDIR += bblimage
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Code_Saturne is EDF's general purpose computational fluid dynamics
software. Developed since 1997 at EDF R&D, it is based on a co-located
Finite Volume approach that accepts meshes with any type of
cell (tetrahedral, hexahedral, prismatic, pyramidal, polyhedral, ...)
and any type of grid structure (unstructured, blockstructured, hybrid,
conforming or with hanging nodes, ...).
Its basic capabilities enable the handling of either incompressible or
expandable flows with or without heat transfer and turbulence (mixing
length, 2-equation models, v2f, Reynolds stress models, Large Eddy
Simulations, ...).
<http://rd.edf.com/code_saturne/>
2007-06-17 21:04:54 +00:00
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SUBDIR += bft
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2007-05-24 22:16:03 +00:00
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SUBDIR += bodr
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2005-01-22 15:01:02 +00:00
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SUBDIR += buddy
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2004-02-27 22:35:23 +00:00
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SUBDIR += cdcl
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2006-01-28 20:40:56 +00:00
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SUBDIR += cdf
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CDO is a collection of command line Operators to manipulate and analyse Climate
model Data. Supported file formats are GRIB, netCDF, SERVICE, EXTRA and IEG.
There are more than 250 operators available. The following table gives a short
overview about the main categories.
* File information (info, sinfo, diff, ...)
* File operations (copy, cat, merge, split*, ...)
* Selection (selcode, selvar, sellevel, seltimestep, ...)
* Missing values (setctomiss, setmisstoc, setrtomiss)
* Arithmetic (add, sub, mul, div, ...)
* Mathematical functions (sqrt, exp, log, sin, cos, ...)
* Comparision (eq, ne, le, lt, ge, gt, ...)
* Conditions (ifthen, ifnotthen, ifthenc, ifnotthenc)
* Field statistic (fldsum, fldavg, fldstd, fldmin, fldmax, ...)
* Vertical statistic (vertsum, vertavg, vertstd, vertmin, ...)
* Time range statistic (timavg, yearavg, monavg, dayavg, ...)
* Ensemble statistic (enssum, ensavg, ensstd, ensmin, ...)
* Regression (detrend)
* Field interpolation (remapbil, remapcon, remapdis, ...)
* Vertical interpolation (ml2pl, ml2hl)
* Time interpolation (inttime, intyear)
WWW: http://www.mpimet.mpg.de/fileadmin/software/cdo/
PR: ports/98099
Submitted by: Sunpoet Po-Chuan Hsieh <sunpoet@sunpoet.net>
2006-06-11 08:41:34 +00:00
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SUBDIR += cdo
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2007-04-01 09:00:23 +00:00
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SUBDIR += cgnslib
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2007-05-24 22:18:10 +00:00
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SUBDIR += chemical-mime-data
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2001-03-30 19:23:00 +00:00
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SUBDIR += chemtool
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2003-10-04 02:30:06 +00:00
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SUBDIR += chemtool-devel
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2001-05-08 00:03:05 +00:00
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SUBDIR += clhep
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2006-07-28 03:38:04 +00:00
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SUBDIR += crf++
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2005-02-24 20:26:31 +00:00
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SUBDIR += dcl
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2005-01-21 19:03:52 +00:00
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SUBDIR += devisor
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2004-03-20 04:50:45 +00:00
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SUBDIR += dft++
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Code_Saturne is EDF's general purpose computational fluid dynamics
software. Developed since 1997 at EDF R&D, it is based on a co-located
Finite Volume approach that accepts meshes with any type of
cell (tetrahedral, hexahedral, prismatic, pyramidal, polyhedral, ...)
and any type of grid structure (unstructured, blockstructured, hybrid,
conforming or with hanging nodes, ...).
Its basic capabilities enable the handling of either incompressible or
expandable flows with or without heat transfer and turbulence (mixing
length, 2-equation models, v2f, Reynolds stress models, Large Eddy
Simulations, ...).
<http://rd.edf.com/code_saturne/>
2007-06-17 21:04:54 +00:00
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SUBDIR += ecs
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2006-04-24 19:49:57 +00:00
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SUBDIR += elmer-eio
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2006-04-24 19:54:02 +00:00
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SUBDIR += elmer-fem
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2006-04-24 19:53:14 +00:00
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SUBDIR += elmer-hutiter
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2006-04-24 19:50:53 +00:00
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SUBDIR += elmer-matc
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2006-04-24 19:46:15 +00:00
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SUBDIR += elmer-meshgen2d
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2006-04-24 19:54:49 +00:00
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SUBDIR += elmerfront
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2006-04-24 19:48:58 +00:00
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SUBDIR += elmergrid
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2006-04-24 19:55:43 +00:00
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SUBDIR += elmerpost
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2002-05-14 03:59:02 +00:00
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SUBDIR += euler
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2006-03-15 10:36:29 +00:00
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SUBDIR += fastcap
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2006-03-15 10:38:00 +00:00
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SUBDIR += fasthenry
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2003-11-08 09:08:52 +00:00
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SUBDIR += felt
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2002-10-14 20:11:17 +00:00
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SUBDIR += flounder
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Code_Saturne is EDF's general purpose computational fluid dynamics
software. Developed since 1997 at EDF R&D, it is based on a co-located
Finite Volume approach that accepts meshes with any type of
cell (tetrahedral, hexahedral, prismatic, pyramidal, polyhedral, ...)
and any type of grid structure (unstructured, blockstructured, hybrid,
conforming or with hanging nodes, ...).
Its basic capabilities enable the handling of either incompressible or
expandable flows with or without heat transfer and turbulence (mixing
length, 2-equation models, v2f, Reynolds stress models, Large Eddy
Simulations, ...).
<http://rd.edf.com/code_saturne/>
2007-06-17 21:04:54 +00:00
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SUBDIR += fvm
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2006-10-02 08:59:12 +00:00
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SUBDIR += g3data
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GAMESS is freely available ab-initio molecular orbital
calculation program calculates energy, molecular structure,
vibrational frequencies from the basic principle of quantum mechanics.
A site license for GAMESS is available at no cost to both academic
and industrial users. Please refer
http://wwwmsg.fi.ameslab.gov/GAMESS/dist.menu.html
for details.
We also included simple launcher called `gamess'
for your convenience. You don't set any environment variable
to run gamess. Just type
% gamess <somefile.inp>
is enough.
WWW: http://wwwmsg.fi.ameslab.gov/GAMESS/
I also recived an e-mail from Mike Schmidt <mike@si.fi.ameslab.gov>
as my inquery.
> I'm maintaining gamess port for FreeBSD only for myself,
> but I'd like to maintain this program at ports tree so that
> everyone can install gamess for FreeBSD very easily like following:
> obtain gamess-current.tar.gz then, put it to some directory, then:
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> % mkdir /usr/ports/distfiles/gamess.20060907.4
> % cp gamess-current.tar.gz /usr/ports/distfiles/gamess.20060907.4/
> % cd /usr/ports/science/gamess
> % make
> % sudo make install
> ...
> will finish the compilation and installation.
>
> So I'd like to ask you about it.
>
> Can I put port such a skeleton, which is merely an installation
> instruction for FreeBSD ports tree like MPQC?
> http://www.freebsd.org/cgi/cvsweb.cgi/ports/science/mpqc/
> Everyone can access this instruction publically.
> Of course, I don't expose gamess archive for public, and if gamess =20
> archive
> is not found, make stops like:
>
>> % make
>> =3D=3D=3D> gamess-20060907.4 You must manually get the source =20
>> distribution from master site. http://www.msg.ameslab.gov/GAMESS/=20
>> dist.menu.html. Please selsect "Source code distribution", and =20
>> check on "running on Intel compatible PC running Linux". You must =20
>> have license, but freely obtainable..
>> *** Error code 1
>
Mike Schmidt <mike@si.fi.ameslab.gov> replied as:
> I do not really object to your idea about "make" for BSD, since
> you don't include source code with it. but don't really understand
> why it would be necessary.
:)
2007-03-13 00:39:58 +00:00
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SUBDIR += gamess
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2004-03-14 16:52:34 +00:00
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SUBDIR += gave
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2003-04-08 00:09:55 +00:00
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SUBDIR += gchempaint
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2003-04-08 00:04:57 +00:00
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SUBDIR += gchemutils
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2002-03-05 03:36:20 +00:00
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SUBDIR += gdis
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2005-09-25 12:45:46 +00:00
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SUBDIR += gerris
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2004-11-15 22:18:09 +00:00
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SUBDIR += getdp
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2003-05-04 02:33:52 +00:00
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SUBDIR += ghemical
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2006-07-28 03:36:25 +00:00
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SUBDIR += ghmm
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2005-10-31 18:48:23 +00:00
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SUBDIR += gnudatalanguage
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2004-02-01 03:09:52 +00:00
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SUBDIR += gramps
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2004-10-19 01:36:11 +00:00
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SUBDIR += gromacs
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2006-03-19 20:51:14 +00:00
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SUBDIR += gsmc
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2004-12-28 23:30:00 +00:00
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SUBDIR += gsystem
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2006-09-27 19:59:46 +00:00
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SUBDIR += gtamsanalyzer
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Gwyddion is a modular SPM (Scanning Probe Microsopy) data visualization and
analysis tool written with Gtk+.
It can be used for all most frequently used data processing operations
including: leveling, false color plotting, shading, filtering, denoising, data
editing, integral transforms, grain analysis, profile extraction, fractal
analysis, and many more. The program is primarily focused on SPM data analysis
(e.g. data obtained from AFM, STM, NSOM, and similar microscopes). However, it
can also be used for analysis of SEM (Scanning Electron Microscopy) data or any
other 2D data.
WWW: http://gwyddion.net/
PR: ports/101773
Submitted by: David Necas <yeti@gwyddion.net>
2006-08-12 22:34:57 +00:00
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SUBDIR += gwyddion
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2004-02-25 22:55:01 +00:00
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SUBDIR += hdf
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SUBDIR += hdf5
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Code_Saturne is EDF's general purpose computational fluid dynamics
software. Developed since 1997 at EDF R&D, it is based on a co-located
Finite Volume approach that accepts meshes with any type of
cell (tetrahedral, hexahedral, prismatic, pyramidal, polyhedral, ...)
and any type of grid structure (unstructured, blockstructured, hybrid,
conforming or with hanging nodes, ...).
Its basic capabilities enable the handling of either incompressible or
expandable flows with or without heat transfer and turbulence (mixing
length, 2-equation models, v2f, Reynolds stress models, Large Eddy
Simulations, ...).
<http://rd.edf.com/code_saturne/>
2007-06-17 21:04:54 +00:00
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SUBDIR += ics
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2004-12-29 20:46:47 +00:00
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SUBDIR += isaac-cfd
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2003-10-24 04:19:28 +00:00
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SUBDIR += kmovisto
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2004-04-30 15:44:32 +00:00
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SUBDIR += kst
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2005-05-15 21:44:02 +00:00
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SUBDIR += lamprop
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2003-04-04 07:28:22 +00:00
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SUBDIR += libctl
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2006-07-03 07:30:45 +00:00
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SUBDIR += libghemical
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2006-12-29 07:41:44 +00:00
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SUBDIR += libint
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2007-07-28 07:10:54 +00:00
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SUBDIR += liblinear
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2001-12-19 03:44:59 +00:00
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SUBDIR += libsvm
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2004-12-11 04:52:40 +00:00
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SUBDIR += libsvm-python
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2006-12-22 03:38:47 +00:00
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SUBDIR += linsmith
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2002-03-09 10:58:55 +00:00
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SUBDIR += mayavi
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2005-05-22 15:50:06 +00:00
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SUBDIR += mbdyn
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2005-02-18 14:17:20 +00:00
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SUBDIR += mcstas
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2006-09-24 23:09:26 +00:00
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SUBDIR += medit
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2006-02-12 15:30:03 +00:00
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SUBDIR += minc
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2006-04-30 12:05:08 +00:00
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SUBDIR += minc2
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2003-04-04 10:22:55 +00:00
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SUBDIR += mpb
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2001-09-12 16:36:24 +00:00
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SUBDIR += mpqc
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2002-07-16 06:53:52 +00:00
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SUBDIR += mpqc-mpich
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Code_Saturne is EDF's general purpose computational fluid dynamics
software. Developed since 1997 at EDF R&D, it is based on a co-located
Finite Volume approach that accepts meshes with any type of
cell (tetrahedral, hexahedral, prismatic, pyramidal, polyhedral, ...)
and any type of grid structure (unstructured, blockstructured, hybrid,
conforming or with hanging nodes, ...).
Its basic capabilities enable the handling of either incompressible or
expandable flows with or without heat transfer and turbulence (mixing
length, 2-equation models, v2f, Reynolds stress models, Large Eddy
Simulations, ...).
<http://rd.edf.com/code_saturne/>
2007-06-17 21:04:54 +00:00
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SUBDIR += ncs
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2006-01-30 22:19:24 +00:00
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SUBDIR += netcdf
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2007-04-28 10:58:01 +00:00
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SUBDIR += nifticlib
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2002-05-28 03:31:29 +00:00
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SUBDIR += oases
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2004-11-15 22:53:44 +00:00
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SUBDIR += omnetpp
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2006-06-12 18:58:44 +00:00
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SUBDIR += oof
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2003-01-05 17:04:59 +00:00
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SUBDIR += openbabel
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2006-01-22 10:13:06 +00:00
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SUBDIR += openfoam
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2004-03-23 23:34:29 +00:00
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SUBDIR += ovt
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2006-08-03 07:29:03 +00:00
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SUBDIR += p5-Algorithm-SVMLight
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2002-02-08 06:15:14 +00:00
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SUBDIR += p5-Chemistry-Elements
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2006-09-28 19:17:57 +00:00
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SUBDIR += paje
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2005-06-14 05:41:20 +00:00
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SUBDIR += paraview
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2006-07-28 03:34:54 +00:00
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SUBDIR += pcp
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2007-04-30 13:44:51 +00:00
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SUBDIR += pnetcdf
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2004-03-19 09:32:49 +00:00
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SUBDIR += psi3
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2005-07-18 16:22:48 +00:00
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SUBDIR += py-paida
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2004-08-26 08:37:09 +00:00
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SUBDIR += py-scipy
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2005-02-10 08:44:55 +00:00
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SUBDIR += qcl
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2004-02-27 23:54:14 +00:00
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SUBDIR += ruby-dcl
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2004-03-14 16:34:51 +00:00
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SUBDIR += ruby-gphys
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2004-11-27 21:38:03 +00:00
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SUBDIR += simlib
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2006-08-01 15:07:54 +00:00
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SUBDIR += svmlight
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2005-03-17 19:30:00 +00:00
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SUBDIR += szip
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2005-01-14 21:52:08 +00:00
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SUBDIR += udunits
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2005-12-10 21:45:28 +00:00
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SUBDIR += v_sim
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2002-01-09 14:51:38 +00:00
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SUBDIR += vis5d+
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2004-08-21 16:34:57 +00:00
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SUBDIR += vmd
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2004-12-26 23:08:06 +00:00
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SUBDIR += x11iraf
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2002-10-15 10:02:15 +00:00
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SUBDIR += xloops-ginac
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2001-09-12 16:36:24 +00:00
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SUBDIR += xmakemol
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2006-07-19 19:58:28 +00:00
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SUBDIR += xmds
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2001-03-24 21:40:17 +00:00
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.include <bsd.port.subdir.mk>
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