Update to 21.u1.d1 (fixes fetch).

Reported by:	fenner's distfile survey

biology/fasta/Makefile

@@ -6,7 +6,7 @@
 #
 
 PORTNAME=	fasta
-PORTVERSION=	21.u1.d0
+PORTVERSION=	21.u1.d1
 CATEGORIES=	biology
 MASTER_SITES=	http://ftp.virginia.edu/pub/fasta/
 DISTNAME=	fasta${PORTVERSION:S/.//g}

biology/fasta/distinfo

@@ -1,3 +1,3 @@
-MD5 (fasta21u1d0.shar.Z) = df423465929b2f8ceaf508dceffa3403
-SHA256 (fasta21u1d0.shar.Z) = b03e11c74bccf42d8319cc98a35df7df02847b8e9f2b45d602220b1e9940a4c0
-SIZE (fasta21u1d0.shar.Z) = 463293
+MD5 (fasta21u1d1.shar.Z) = f7fefbcf6b07e546eed1a1c6df98821e
+SHA256 (fasta21u1d1.shar.Z) = 9b45ffb0ba7111f398f03fffd77d8c823ced6756461ec96428dc36d88d6777f3
+SIZE (fasta21u1d1.shar.Z) = 445052

biology/fasta/files/patch-Makefile

@@ -1,7 +1,7 @@
---- Makefile.orig	Mon Jan 29 15:10:42 2001
-+++ Makefile	Mon Jan 29 15:15:08 2001
-@@ -3,14 +3,14 @@
- # for mips, also use: -mips2 -O2
+--- Makefile.orig	Sun May  7 22:29:14 2006
++++ Makefile	Sun May  7 22:30:52 2006
+@@ -2,14 +2,14 @@
+ # for SGI also use: -signed
  #
  
 -CC= cc -O
@@ -13,13 +13,13 @@
 +CFLAGS+= -DUNIX -DBIGMEM -DSFCHAR="':'" -DEXPM1 -DPROGRESS -DGAP_OPEN
  LFLAGS= -lm -o
  
--BIN = /seqprg/slib/bin
+-BIN = /seqprg/bin
 +BIN = $(PREFIX)/bin
  #NRAND= nrand
  #IBM RS/6000
- NRAND= nrand48
+ #NRAND= nrand48
 @@ -29,7 +29,7 @@
- sall : $(SPROGS)
+ all : $(PROGS)
  
  install : 
 -	cp $(PROGS) $(BIN)

biology/fasta/pkg-descr

@@ -1,10 +1,11 @@
-Version 2 of the FASTA packages contains many programs for searching DNA and
-protein databases, performing sequence comparisons, producing local
-alignments, and other related tasks.
+Version 2 of the FASTA packages contains many programs for performing
+sequence comparisons, producing local alignments, and other related tasks
+for analysing DNA and proteins.
 
-Currently, the FASTA2 suite is in maintenance mode.  Updated versions of ONLY
-the searching programs are available in version 3 of the FASTA packages,
-which may be found in the port biology/fasta3.
+Currently, the FASTA2 suite is in maintenance mode.  This package provides
+the analysis tools from FASTA2.  The searching programs are available in
+version 3 of the FASTA packages, which may be found in the port
+biology/fasta3.
 
 FASTA is described in:  W. R. Pearson and D. J. Lipman (1988), "Improved
 Tools for Biological Sequence Analysis", PNAS 85:2444- 2448, and W. R.
@@ -16,5 +17,3 @@ not be sold or incorporated into a commercial product.
 
 Author: William R Pearson <wrp@virginia.edu>
 WWW:    http://fasta.bioch.virginia.edu/
-
--- Johann Visagie <johann@egenetics.com>

biology/fasta/pkg-plist

@@ -16,8 +16,6 @@ bin/align
 bin/align0
 bin/bestscor
 bin/crandseq
-bin/fasta
-bin/fastx
 bin/flalign
 bin/fromgb
 bin/garnier
@@ -26,15 +24,9 @@ bin/lalign
 bin/lfasta
 bin/plalign
 bin/plfasta
-bin/prdf
-bin/prss
 bin/psgrease
 bin/randseq
 bin/relate
 bin/revcomp
-bin/ssearch
-bin/tfasta
-bin/tfastx
 bin/tgrease
-bin/zs_exp
 %%PORTDOCS%%@dirrm %%DOCSDIR%%