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biology/andi: New ports: Efficient estimation of evolutionary distances

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This commit is contained in:
Yuri Victorovich 2024-09-07 14:29:14 -07:00
parent 8e55ceb40b
commit 7989e8dd3d
4 changed files with 40 additions and 0 deletions
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1
biology/Makefile
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@ -5,6 +5,7 @@
SUBDIR += R-cran-BiocManager
SUBDIR += abyss
SUBDIR += ad2vcf
SUBDIR += andi
SUBDIR += artemis
SUBDIR += atac-seq
SUBDIR += augustus

32
biology/andi/Makefile Normal file
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@ -0,0 +1,32 @@
PORTNAME= andi
DISTVERSIONPREFIX= v
DISTVERSION= 0.14-3
DISTVERSIONSUFFIX= -g390af15
CATEGORIES= biology devel
MAINTAINER= yuri@FreeBSD.org
COMMENT= Efficient estimation of evolutionary distances
WWW= https://github.com/EvolBioInf/andi
LICENSE= GPLv3
LICENSE_FILE= ${WRKSRC}/COPYING
LIB_DEPENDS= libdivsufsort.so:math/libdivsufsort \
libgsl.so:math/gsl
USES= autoreconf gmake localbase pkgconfig
USE_LDCONFIG= yes
USE_GITHUB= yes
GH_ACCOUNT= EvolBioInf
GNU_CONFIGURE= yes
OPTIONS_DEFINE= DOCS
PORTDOCS= *
PLIST_FILES= bin/andi \
share/man/man1/andi.1.gz
.include <bsd.port.mk>

3
biology/andi/distinfo Normal file
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@ -0,0 +1,3 @@
TIMESTAMP = 1725743879
SHA256 (EvolBioInf-andi-v0.14-3-g390af15_GH0.tar.gz) = 7373445abd107bbc7fed2f3f01e3dbc34955089cf0690e26beb16bd4014b39ce
SIZE (EvolBioInf-andi-v0.14-3-g390af15_GH0.tar.gz) = 539569

4
biology/andi/pkg-descr Normal file
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@ -0,0 +1,4 @@
andi is a program for estimating the evolutionary distance between closely
related genomes. These distances can be used to rapidly infer phylogenies
for big sets of genomes. Because andi does not compute full alignments,
it is so efficient that it scales even up to thousands of bacterial genomes.