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1abb4c4130
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1284 Commits

Author SHA1 Message Date
Sunpoet Po-Chuan Hsieh
1abb4c4130 - Update to 0.39 2011-08-01 03:11:37 +00:00
Mark Linimon
06e6677793 Now that the Java 1.3 and Java 1.4 ports are deprecated and will expire soon, 
remove support for them from bsd.java.mk.  As Jikes is not available in Java 1.5
or higher, remove it from bsd.java.mk too (suggested by hq@) and from the ports
which used it (only occurences were USE_JIKES=no).  Support for the Blackdown VM
is also removed, as it is not available in Java 1.5 and higher.

Also remove the mapping from Java 1.1-1.4 to Java 1.5+ in bsd.java.mk to detect
old, broken ports; therefore bump the minimal value of JAVA_VERSION to 1.5.
While here, replace static values of JAVA_VERSION in files/*.in by
%%JAVA_VERSION%% .

PR:		ports/158969
Submitted by:	rene
Tested on:	pointyhat-west -exp
 2011-07-21 05:03:02 +00:00
Sunpoet Po-Chuan Hsieh
44e3305c58 - Update to 0.38 
- Sort MAN3 and PLIST
 2011-07-16 06:08:34 +00:00
Sunpoet Po-Chuan Hsieh
b0ea119ac6 - Update to 1.20 
- Sort RUN_DEPENDS and MAN3

Changes:	http://search.cpan.org/dist/Bio-MAGETAB/Changes
 2011-07-13 06:48:25 +00:00
Martin Wilke
231379d81f - kick MD5 2011-07-02 11:33:17 +00:00
Chris Rees
f568ba617f - Use USERS and GROUPS 
- Use ${SH} instead of calling script directly

PR:		ports/157575
Submitted by:	Chris Rees (utisoft@gmail.com)
Approved by:	tabthorpe (co-mentor)
 2011-06-27 17:50:37 +00:00
Nicola Vitale
c8a6af0499 - Fix *_DEPENDS after the repocopy of databases/py-sqlalchemy 
(This port doesn't yet support SQLAlchemy 0.7.X)
- Bump PORTREVISION
 2011-06-25 07:21:20 +00:00
Max Brazhnikov
17fdc75f81 Switch dependency on povray to povray-meta port. 
Remove MD5 sum while I'm here.
 2011-06-20 22:32:03 +00:00
Baptiste Daroussin
936e8954f7 Another bunch of deprecation: no more public distfiles and/or abandonware 2011-06-16 17:33:07 +00:00
Baptiste Daroussin
2059327040 Another bunch of deprecation: no more public distfiles and/or abandonware 2011-06-16 10:43:58 +00:00
Wen Heping
3fc502f7c5 - Update to 0.5 
ChangeLog: http://cpansearch.perl.org/src/RBUELS/Bio-GFF3-0.5/Changes
 2011-06-10 08:12:40 +00:00
Julien Laffaye
1ca81797c4 Update to 1.1.04 
PR:		ports/157527
Submitted by:	Motomichi Matsuzaki <mzaki@m.u-tokyo.ac.jp>
Approved by:	bapt (mentor)
 2011-06-09 16:33:21 +00:00
Baptiste Daroussin
17958f49d2 deprecate and set expiration date: 
it is an abandonware and it is unmaintain for very long
 2011-06-08 16:15:45 +00:00
Wen Heping
f7d6e48421 - Update to 0.4.3 2011-06-02 01:38:55 +00:00
Baptiste Daroussin
866dab5761 - update to 2.24 
- add licenses
- changes: http://cpansearch.perl.org/src/LDS/Bio-Graphics-2.24/Changes
 2011-06-01 20:21:51 +00:00
Wen Heping
5d036cfb8c - Update to 1.57 
PR:		ports/156329
Submitted by:	Wen Heping (myself)
Approved by:	maintainer
 2011-05-24 09:06:29 +00:00
Maho Nakata
78581892b3 Update to 1.6. Web site has been moved. 2011-05-11 05:55:27 +00:00
Brendan Fabeny
4fd0a4b1c1 Update math/gsl to 1.15, and adjust PORTREVISION 
and LIB_DEPENDS of dependent ports
 2011-05-09 16:42:27 +00:00
Wen Heping
a6c7fafc81 - Update to 0.4 
http://cpansearch.perl.org/src/RBUELS/Bio-GFF3-0.4/Changes
 2011-05-09 06:32:51 +00:00
Maho Nakata
f2febc81ee update to 1.4.1 
Notified by: Alvin Oga
 2011-05-09 04:36:54 +00:00
Steve Wills
03809fed45 - Update to 2.11 
Changes:	http://cpansearch.perl.org/dist/Bio-Das-Lite/Changes
 2011-05-08 17:06:15 +00:00
Max Brazhnikov
630ca2285f Bump PORTREVISION after open-mofit update 2011-05-02 12:44:53 +00:00
Max Brazhnikov
642c8ce78f Fix build with open-motif-2.3.3 
PR:		ports/154044
Submitted by:	Mikhail Tsatsenko <m.tsatsenko at gmail.com>
Exp-runs by:	pav
 2011-05-02 12:41:44 +00:00
Greg Larkin
7a3687325a - Updated WWW: to a working link 
- Copied unbranded distfile (dotter.LIN) to LOCAL/glarkin for mirroring to
  MASTER_SITE_LOCAL and prevention of fetch checksum error. [1]

Reported by:	pointyhat (via miwi)
 2011-04-22 18:59:11 +00:00
Wen Heping
ac92b12813 Bio::GFF3 are low-level, fast functions for parsing GFF version 3 files. 
All they do is convert back and forth between low-level Perl data
structures and GFF3 text.

WWW: http://search.cpan.org/dist/Bio-GFF3/
 2011-04-22 08:51:24 +00:00
Wen Heping
65d8cb8c00 - Update to 0.4.2 2011-04-13 09:11:20 +00:00
Ade Lovett
fe0d23d638 Update to GNU make 3.82 after numerous -exp runs. 2011-04-11 19:54:35 +00:00
Wen Heping
6edfd6fb2e - Update to 0.36 2011-04-01 08:34:03 +00:00
Martin Wilke
a9481afc8a - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
Wen Heping
50fb69d7fc - Take maintainership 2011-03-14 00:35:45 +00:00
Thomas Abthorpe
531fedaadc - Reassign to the heap 
PR:		ports/155507 ports/155508
 2011-03-13 06:08:53 +00:00
Wen Heping
34ffacfa25 - Update to 0.35 2011-02-28 01:30:15 +00:00
Martin Wilke
9992960752 - Move over to python2.5 or higher 
- While here kick md5
 2011-02-24 23:25:54 +00:00
Wen Heping
0f9eae8df3 - Update to 0.8 2011-02-15 01:59:12 +00:00
Frederic Culot
365d4641b4 - Update to 1.12.5 
Changes:	http://sourceforge.net/news/?group_id=100316&id=297223
 2011-02-11 13:11:45 +00:00
Martin Wilke
9d6770ef98 - Update to 5.1.09 
PR:		154359
Submitted by:	Ruslan Mahmatkhanov <cvs-src@yandex.ru>
Feature safe:	yes
 2011-01-31 11:45:44 +00:00
Pav Lucistnik
e06433c705 - Unbreak the port; I'm not sure how it could possibly work before 
Reported by:	pointyhat
Feature safe:	yes
 2011-01-27 17:41:16 +00:00
Pav Lucistnik
c44cd0a5c2 - Change depobj for fasta3 to something that does not change on fasta updates 
Reported by:	pointyhat
Feature safe:	yes
 2011-01-27 17:26:45 +00:00
Beat Gaetzi
ae9f790ad1 - Update to 36.3.2 to fix distfile fetching on pointyhat 
PR:		ports/154267
Submitted by:	Fernan Aguero <fernan AT iib.unsam.edu.ar> (maintainer)
Feature safe:	yes
 2011-01-26 20:26:36 +00:00
Pav Lucistnik
a953b88289 - Fix fetch 
Reported by:	pointyhat
Feature safe:	yes
 2011-01-24 21:17:30 +00:00
Philip M. Gollucci
3f26ca6c43 - Fix pkg-plist, got the wrong version before 
Reported by:    pointyhat via pav
 2010-12-30 23:08:47 +00:00
Philip M. Gollucci
116ec22ac1 - DISTNAME= ${PORTNAME}-${PORTVERSION} is the default and not needed. 
PR:             ports/153292
Submitted by:   myself (pgollucci)
Tested by:      -exp run by pav
Approved by:    portmgr (pav)
 2010-12-29 20:04:42 +00:00
Philip M. Gollucci
c58c954676 - Update to 1.4.1 
- Remove MD5

PR:             ports/153394
Submitted by:   myself (pgollucci)
Approved by:    mauricio@arareko.net (maintainer)
Sponsored by:   RideCharge Inc. / TaxiMagic
 2010-12-27 15:11:50 +00:00
Sunpoet Po-Chuan Hsieh
a32defea5d - Use canonical format for FreeBSD.org MAINTAINER addresses 
- Remove obsolete MD5 checksum while I'm here

PR:		ports/152844
Submitted by:	sunpoet (myself)
Approved by:	miwi (with portmgr hat)
 2010-12-25 16:55:41 +00:00
Wen Heping
bba5355e92 - Update to 2.18 
ChangeLog: http://cpansearch.perl.org/src/LDS/Bio-Graphics-2.18/Changes
 2010-12-23 06:37:08 +00:00
Wen Heping
44a8e2746c - Update to 0.34 2010-12-23 06:33:33 +00:00
Wen Heping
a8874c7021 - Fix fetch 
Reported by:	QAT@
 2010-12-21 00:12:22 +00:00
Wen Heping
0c58bca1ec - Update to 0.33 2010-12-16 08:19:56 +00:00
Philip M. Gollucci
7823a28b14 - Update to 0.32 
With Hat:       perl@
Changes:        http://search.cpan.org/dist/Bio-Phylo/Changes
 2010-12-12 21:29:40 +00:00
Philip M. Gollucci
8563ed7899 - fix fetch: wget is not required for fetching 
Reported by:    QAT
 2010-12-12 08:10:05 +00:00