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Commit Graph

3521 Commits

Author SHA1 Message Date
Sunpoet Po-Chuan Hsieh
c9e9f17c7d Update to 1.9.2
- Update MASTER_SITES
- Update WWW

Changes:	https://code.mpimet.mpg.de/news/392
		https://code.mpimet.mpg.de/news/387
2017-12-12 13:32:53 +00:00
Antoine Brodin
a8cc35a10e - Those ports fail to build with python3
- Add some explicit FLAVOR to dependencies where needed
2017-12-12 12:40:15 +00:00
Sunpoet Po-Chuan Hsieh
ae23d9c1e8 Update WWW
- Reformat pkg-descr
2017-12-11 10:37:28 +00:00
Sunpoet Po-Chuan Hsieh
e034889c5e Update WWW
- Reformat pkg-descr
2017-12-11 10:37:24 +00:00
Sunpoet Po-Chuan Hsieh
c831858900 Update WWW
- Reformat pkg-descr
2017-12-11 10:37:19 +00:00
Sunpoet Po-Chuan Hsieh
3a18538b9a Update WWW
- Reformat pkg-descr
2017-12-11 10:37:14 +00:00
Antoine Brodin
a021c1b8c0 - Those ports fail to build with python3
- Add some explicit FLAVOR to dependencies where needed
2017-12-10 20:48:45 +00:00
Antoine Brodin
641aab050a mei fails to build with python3 2017-12-09 11:39:45 +00:00
Steve Wills
43e164ab3e science/mcstas: switch back to PORTVERSION
Avoids an issue with verion going backwards.
2017-12-06 16:18:35 +00:00
Dmitry Marakasov
abfa09ec2b - Fix LICENSE
- Add LICENSE_FILE
- Switch to new test framework
- Update WWW

Approved by:	portmgr blanket
2017-12-06 09:00:23 +00:00
Yuri Victorovich
9e8cc175a0 New port: science/mcxtrace: Monte Carlo X-ray tracing package
PR:		206505
Submitted by:	Erik B Knudsen <erkn@fysik.dtu.dk>
Approved by:	tcberner (mentor)
Differential Revision:	https://reviews.freebsd.org/D13216
2017-12-05 19:15:49 +00:00
Steve Wills
ef7b06f26c science/mcstas: simplify Makefile
While here, remove unecessary pkg-install/deinstall

PR:		223905
Submitted by:	Erik B Knudsen <erkn@fysik.dtu.dk> (maintainer)
2017-12-05 17:32:37 +00:00
Rodrigo Osorio
1b363765bd Add new port science/aircraft-datcom
aircraft-datcom is a modified version of USAF Aircraft DATCOM
The goal of the project is to update the code and make it more usable by the end users

PR:		207928
Submitted by:	Michael Danilov <mike.d.ft402@gmail.com>
2017-12-03 21:26:18 +00:00
Yuri Victorovich
0026e03cbb New port: science/ALPSCore: Generic algorithms and utilities for condensed matter physics
PR:		223850
Submitted by:	Michael Danilov <mike.d.ft402@gmail.com>
Approved by:	tcberner (mentor)
Differential Revision:	https://reviews.freebsd.org/D13237
2017-12-03 19:29:13 +00:00
Thierry Thomas
77bcb2723e Forgot to bump revision of FORTRAN libs in the previous commit. 2017-12-03 15:30:23 +00:00
Thierry Thomas
c25c56bf29 Upgrade HDF5 to 1.8.20.
Release notes at
https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8/hdf5-1.8.20/src/hdf5-1.8.20-RELEASE.txt
2017-12-03 15:14:06 +00:00
David Chisnall
f9197640d9 Fix configure options for gnustep-make
We were not setting the flag to select the GNUstep ABI, so were defaulting to
using the GCC-compatible version, which was likely to trigger a lot of subtle
bugs.  This was noticed when C++ exceptions thrown through Objective-C stack
frames caused segfaults.
2017-12-03 12:23:53 +00:00
Antoine Brodin
07faea058d Cleanup LIB_DEPENDS on libpng 2017-12-01 07:19:53 +00:00
Matthias Andree
1fb0ae7cf9 Security update OpenEXR and ilmbase to 2.2.1.
While here, fix libIlmImfUtil_la_LDFLAGp so that when linking libIlmImfUtil,
the locally built libIlmImf gets precedence over the one in /usr/local,
to permit upgrades in a running system with the older version installed.

This changes the library's SONAME, so bump PORTREVISION of all dependees.

Unfortunately, this looks a bit too intrusive for an MFH to 2017Q4.

Security:	CVE-2017-9110
Security:	CVE-2017-9111
Security:	CVE-2017-9112
Security:	CVE-2017-9113
Security:	CVE-2017-9114
Security:	CVE-2017-9115
Security:	CVE-2017-9116
Security:	803879e9-4195-11e7-9b08-080027ef73ec
2017-12-01 01:58:23 +00:00
Mathieu Arnold
551be3c723 Convert Python ports to FLAVORS.
Ports using USE_PYTHON=distutils are now flavored.  They will
  automatically get flavors (py27, py34, py35, py36) depending on what
  versions they support.

  There is also a USE_PYTHON=flavors for ports that do not use distutils
  but need FLAVORS to be set.  A USE_PYTHON=noflavors can be set if
  using distutils but flavors are not wanted.

  A new USE_PYTHON=optsuffix that will add PYTHON_PKGNAMESUFFIX has been
  added to cope with Python ports that did not have the Python
  PKGNAMEPREFIX but are flavored.

  USES=python now also exports a PY_FLAVOR variable that contains the
  current python flavor.  It can be used in dependency lines when the
  port itself is not python flavored.  For example, deskutils/calibre.

  By default, all the flavors are generated.  To only generate flavors
  for the versions in PYTHON2_DEFAULT and PYTHON3_DEFAULT, define
  BUILD_DEFAULT_PYTHON_FLAVORS in your make.conf.

  In all the ports with Python dependencies, the *_DEPENDS entries MUST
  end with the flavor so that the framework knows which to build/use.
  This is done by appending '@${PY_FLAVOR}' after the origin (or
  @${FLAVOR} if in a Python module with Python flavors, as the content
  will be the same).  For example:

    RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}six>0:devel/py-six@${PY_FLAVOR}

PR:		223071
Reviewed by:	portmgr, python
Sponsored by:	Absolight
Differential Revision:	https://reviews.freebsd.org/D12464
2017-11-30 15:50:30 +00:00
Mark Linimon
b9fc4cbf35 Also not for armv7. Missed in previous sweep. 2017-11-30 06:43:49 +00:00
Mark Linimon
bf43557044 For ports that are marked BROKEN on armv6, and also fail to build on
armv7, mark them so.

This is part two of a multipart commit to bring armv7 ports to parity
with armv6.

Approved by:	portmgr (tier-2 blanket)
Obtained from:	lonesome.com -exp run
2017-11-30 06:13:34 +00:00
Mark Linimon
14295721d4 For ports that are marked NOT_FOR/ONLY_FOR armv6, also mark them so
on armv7.

This is part one of a multipart commit to bring armv7 ports to parity
with armv6.

Approved by:	portmgr (tier-2 blanket)
2017-11-30 05:55:17 +00:00
Thierry Thomas
111d6e8555 Upgrade to 3.0.2.
The new version brings important support for Abaqus(TM) and will be supported
in a future release of CalculiX.

PR:		216315
Submitted by:	Pedro F. Giffuni
2017-11-25 10:43:57 +00:00
Yuri Victorovich
4fb7bfbe5a New port: science/chemps2: Spin-adapted implementation of DMRG for ab initio quantum chemistry
Approved by:	tcberner (mentor)
Differential Revision:	https://reviews.freebsd.org/D13100
2017-11-23 05:58:51 +00:00
Yuri Victorovich
fbacb4ad48 New port: science/gdma: Anthony Stone's Gaussian Distributed Multipole Analysis
Approved by:	tcberner (mentor)
Differential Revision:	https://reviews.freebsd.org/D13110
2017-11-18 05:12:35 +00:00
Thierry Thomas
ee38c2d348 Chase metis-edf's upgrade. 2017-11-16 20:55:27 +00:00
Yuri Victorovich
54eb14a119 New port: science/py-scoria: Lightweight molecule manipulation codebase
Approved by:	tcberner (mentor)
Differential Revision:	https://reviews.freebsd.org/D13119
2017-11-16 18:27:47 +00:00
Yuri Victorovich
3d96790bcd New port: science/erd: AcesIII electron repulsion integrals
Approved by:	tcberner (mentor)
Differential Revision:	https://reviews.freebsd.org/D13080
2017-11-14 18:44:05 +00:00
Yuri Victorovich
1d9170fe49 New port: science/pcmsolver: API for the Polarizable Continuum Model
Approved by:	tcberner (mentor)
Differential Revision:	https://reviews.freebsd.org/D13069
2017-11-14 18:05:42 +00:00
Yuri Victorovich
b666bfd0cf New port: science/libefp: Effective fragment potential method in quantum chemistry
Approved by:	tcberner (mentor)
Differential Revision:	https://reviews.freebsd.org/D13072
2017-11-14 04:31:58 +00:00
Yuri Victorovich
40006c879c New port: science/dkh: Wolf, Reiher, and Hess's Douglas-Kroll-Hess relativistic correction
Approved by:	tcberner (mentor)
Differential Revision:	https://reviews.freebsd.org/D13068
2017-11-13 06:08:40 +00:00
Thierry Thomas
d66d640322 Fix libhdf5-18.settings and suffix usage in tools. 2017-11-12 20:44:50 +00:00
Sunpoet Po-Chuan Hsieh
9aa9cff929 Update to 1.0.2
Changes:	https://gitlab.dkrz.de/k202009/libaec/blob/master/CHANGELOG.md
2017-11-12 19:09:54 +00:00
Sunpoet Po-Chuan Hsieh
36c52b3aee Update to 1.24.0
Changes:	https://software.ecmwf.int/wiki/display/GRIB/Latest+news
2017-11-12 19:09:49 +00:00
Yuri Victorovich
5d474a94d0 New port: science/py-qspin: Learn quantum spin and entanglement
PR:		221401
Approved by:	tcberner (mentor)
Differential Revision:	https://reviews.freebsd.org/D12993
2017-11-10 21:55:26 +00:00
Antoine Brodin
1db38a9aa7 Mark BROKEN: fails to build
Extracting Bazel installation...
ERROR: /wrkdirs/usr/ports/science/py-tensorflow/work/tensorflow-1.2.1/bazel_ot/f4693a59cc0f39b12832b03860533e20/external/io_bazel_rules_closure/closure/private/defs.bzl:27:16: The `set` constructor for depsets is deprecated and will be removed. Please use the `depset` constructor instead. You can temporarily enable the deprecated `set` constructor by passing the flag --incompatible_disallow_set_constructor=false
ERROR: error loading package '': Extension file 'closure/private/defs.bzl' has errors

Reported by:	pkg-fallout
2017-11-05 16:43:30 +00:00
Sunpoet Po-Chuan Hsieh
4f26b50b65 Update to 1.14.3
Changes:	https://github.com/pysal/pysal/releases
		https://github.com/pysal/pysal/blob/master/CHANGELOG.txt
2017-11-04 22:56:47 +00:00
Jan Beich
e4b4177bbc Don't try to look for PLIST under .OBJDIR
If MAKEOBJDIRPREFIX and WRKDIRPREFIX are same PLIST may point to a
non-existing file under .OBJDIR without breaking build.

$ export MAKEOBJDIRPREFIX=/tmp
$ echo WRKDIRPREFIX=/tmp >>${__MAKE_CONF-/etc/make.conf}
$ cd /usr/ports/print/harfbuzz-icu
$ make clean patch
$ make -V .OBJDIR
/tmp/usr/ports/print/harfbuzz-icu
$ make install
$ pkg info -l harfbuzz-icu
harfbuzz-icu-1.5.1_2:

PR:		219008
Submitted by:	Ilia Skalozubov (based on)
Approved by:	portmgr blanket
2017-11-02 04:07:23 +00:00
Jimmy Olgeni
258b5d44ad Fix whitespace issues (mixed tab/spaces, alignment) in a few ports. 2017-10-31 14:51:53 +00:00
Mikhail Pchelin
edaca3e20a - update from 0.3 to 0.4
Approved by:	jpaetzel (mentor)
2017-10-30 14:57:16 +00:00
Mikhail Pchelin
bb2501bc05 - update from 1.1.0 to 1.3.0
Approved by:	jpaetzel (mentor)
2017-10-30 14:45:19 +00:00
Mikhail Pchelin
7e76c3431b - update from 2.2 to 2.3
Approved by:	jpaetzel (mentor)
2017-10-30 14:20:02 +00:00
Mathieu Arnold
4b19de29ad Fix options usage.
You cannot set a variable after any include and use it in options, as
options is one of the few things that are done very very early.

PR:		223071
Reported by:	antoine
Sponsored by:	Absolight
2017-10-27 12:19:20 +00:00
Sunpoet Po-Chuan Hsieh
b7e862cc15 Update to 4.5.0
- Pet portlint: reorder LICENSE knobs

Changes:	https://github.com/Unidata/netcdf-c/releases
2017-10-21 20:18:16 +00:00
Boris Samorodov
93210d6be3 science/pulseview: Update to version 0.4.0, switch to QT5. 2017-10-11 21:50:30 +00:00
Boris Samorodov
f7b23caa3a science/sigrok-cli: Update to version 0.7.0. 2017-10-11 21:48:56 +00:00
Boris Samorodov
b8a6fac2dd science/sigrok-firmware-fx2laf: Update to version 0.1.5. 2017-10-11 21:48:08 +00:00
Mark Linimon
3ef3461740 For ports that are explicitly enabled on armv6, also enable them
on armv7.  This has not been tested with an -exp run but should
"do no harm".

PR:		221894 (partial)
2017-10-10 21:31:30 +00:00
Luca Pizzamiglio
9bae30a179 science/py-scikit-fuzzy: Update to 0.3.1
PR:		222843
Submitted by:	yuri@rawbw.com (maintainer)
Approved by:	olivier (mentor)
Differential Revision:	https://reviews.freebsd.org/D12626
2017-10-09 13:32:58 +00:00