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Steve Price
61cc06a312 Adding phylip version 3.5. 
This is a FREE package of programs for inferring phylogenies and carrying
out certain related tasks.  At present it contains 30 programs, which carry
out different algorithms on different kinds of data.

PR:		19705
Submitted by:	David A. Bader <dbader@cielo.eece.unm.edu>
 2000-07-10 03:25:48 +00:00
Steve Price
54c8d2b706 Add paml version 3.01. 
A set of utilities for performing Phylogenetic Analysis by Maximum
Likelihood (PAML).

PR:		19753
Submitted by:	David A. Bader <dbader@cielo.eece.unm.edu>
 2000-07-10 03:21:05 +00:00
Steve Price
8546beeba5 Adding clustalw version 1.81. 
A CLUSTAL W Multiple Sequence Alignment Program.

PR:		19746
Submitted by:	David A. Bader <dbader@cielo.eece.unm.edu>
 2000-07-10 03:17:40 +00:00
Steve Price
22dbc333ba Adding chemeq version 1.10. 
Outputs LaTeX code for chemical reactions.

PR:		19374
Submitted by:	Ryo MIYAMOTO <rmiya@cc.hirosaki-u.ac.jp>
 2000-07-10 03:14:19 +00:00
Steve Price
203af09667 Activating the grip and rio500 ports. 2000-07-10 03:12:34 +00:00
Steve Price
981bd36b5f Adding rio500 version 0.6. 
Utilities for the Diamond Rio500.

PR:		19195
Submitted by:	Kazumasa Nishizawa <k_nishizawa@anet.ne.jp>
 2000-07-10 03:11:38 +00:00
Steve Price
3a28a2cc4a Add grip version 2.94. 
GTK-based front-end to external cd audio rippers and mp3 encoders.

PR:		19167
Submitted by:	Kelly Yancey <kbyanc@posi.net>
 2000-07-10 03:09:55 +00:00
Steve Price
7946475a30 Adding seti_appelt version 0.2.2. 
An applet that displays the current status of a seti@home client.

PR:		19607
Submitted by:	HIYAMA Takeshi <th@cis.ibaraki.ac.jp>
 2000-07-10 03:07:30 +00:00
Steve Price
ed7f616289 Build with tcl8.2 instead of tcl8.0. 
PR:		19108
Submitted by:	Adrian Filipi-Martin <adrian@ubergeeks.com>
 2000-07-10 02:13:02 +00:00
Steve Price
20e547b840 Remove the definitionsn of EMACS_{NAME,VER,LIBDIR} as they are now in 
bsd.emacs.mk.

PR:		19312
Submitted by:	maintainer
 2000-07-10 02:10:29 +00:00
Steve Price
cb1c44f765 Remove the definitionsn of EMACS_{NAME,VER,LIBDIR} as they are now in 
bsd.emacs.mk.

PR:		19311
Submitted by:	maintainer
 2000-07-10 02:09:11 +00:00
Steve Price
55549e44db Remove the definitionsn of EMACS_{NAME,VER,LIBDIR} as they are now in 
bsd.emacs.mk.

PR:		19310
Submitted by:	maintainer
 2000-07-10 02:08:19 +00:00
Steve Price
3309cf9675 Remove the definitionsn of EMACS_{NAME,VER,LIBDIR} as they are now in 
bsd.emacs.mk.

PR:		19309
Submitted by:	maintainer
 2000-07-10 02:05:24 +00:00
Steve Price
188b392f5f Update to version 1.1.1. 
PR:		19308
Submitted by:	maintainer
 2000-07-10 02:03:31 +00:00
Steve Price
93be1a8992 Update to version 1.3.12, RA 29.4. 
PR:		19184
Submitted by:	maintainer
 2000-07-10 02:01:53 +00:00
Steve Price
9fae85708d Use DEFAULTPGP to set the desired version of PGP/GPG. 
PR:		19171
Submitted by:	maintainer
 2000-07-10 01:59:13 +00:00
Steve Price
4416197424 General cleanup. The biggest change is to only install the core C 
development kit ant not the (now out-of-date) other language bindings.

PR:		19168
Submitted by:	maintainer
 2000-07-10 01:54:57 +00:00
Steve Price
428a33cce5 Update to version 0.12. 
PR:		19144
Submitted by:	maintainer
 2000-07-10 01:52:43 +00:00
Steve Price
e4fe8c337d Update to version 0.12. 
PR:		19143
Submitted by:	maintainer
 2000-07-10 01:45:31 +00:00
Steve Price
782f056710 - Set USE_X_PREFIX. 
- Consistently put things in the jx directory.

PR:		19135
Submitted by:	maintainer
 2000-07-10 01:44:23 +00:00
Steve Price
7a48d652a4 Update to version 1.88. 
PR:		19134
Submitted by:	Mario Sergio Fujikawa Ferreira <lioux@uol.com.br>
 2000-07-10 01:41:27 +00:00
Steve Price
5d8a3d2015 Fixup BUILD_DEPENDS line so 'make describe' among other things doesn't 
hack up furballs.
 2000-07-10 01:40:05 +00:00
Steve Price
1e5b2beb61 - Enable ja, ru and fr message catalogs 
- Change default paper size to A4
- Support NOPORTDOCS
- Remove XMKMF

PR:		19360
Submitted by:	maintainer
 2000-07-10 01:35:57 +00:00
Steve Price
e17e471330 Update to version 0.87. 
PR:		19484
Submitted by:	James Shrenk <di0nys0s@earthlink.net>
 2000-07-10 01:34:31 +00:00
Steve Price
053c7f3c44 - Fix MASTER_SITES 
- Supporrt X11BASE properly

PR:		19765
Submitted by:	KATO Tsuguru <tkato@prontomail.ne.jp>
 2000-07-10 01:32:58 +00:00
Steve Price
5f5e85e8b9 XEMACS_VER should now be 21.1.10. 2000-07-10 01:18:46 +00:00
Steve Price
853e9b0745 EMACS_VER should now be 20.7. 2000-07-10 01:11:50 +00:00
Steve Price
5706f4d98c The xemacs21 version is now 21.1.10. 2000-07-10 01:06:18 +00:00
Jean-Marc Zucconi
670b25f457 Fix a path (extra X11R6/) 
Submitted by:	Andreas Klemm <andreas@klemm.gtn.com>
 2000-07-09 22:39:34 +00:00
Andreas Klemm
d359087daa Update to latest version 0.98.6 
TCL/TK 8.3 works, so changed port dependencies
 2000-07-09 19:55:58 +00:00
Daniel Harris
c26b9ffe31 Better MASTER_SITES, support CFLAGS/LOCALBASE properly. 
PR:		19762
Submitted by:	KATO Tsuguru <tkato@prontomail.ne.jp>
 2000-07-09 19:43:55 +00:00
Andreas Klemm
4e035af6d3 Update inn-stable port to last stable version 2000-07-09 19:25:07 +00:00
Ade Lovett
8b3a26af9d Update to 1.8.9 2000-07-09 19:21:26 +00:00
Ade Lovett
4b145e6e8b Fix typos 
PR:		19800
Submitted by:	Nishimura Takashi <takashi@ueda.info.waseda.ac.jp>
 2000-07-09 18:55:38 +00:00
Daniel Harris
67a30fd88a Update to version 3.2, remove non-working Australian MASTER_SITE, remove 
patch-ab (integrated by amaya's authors).

PR:		19792
Submitted by:	MAINTAINER
 2000-07-09 18:41:39 +00:00
John Polstra
6d296c9994 Update the cvsup-mirror port to reflect the fact that crypto isn't 
a special case any more.
 2000-07-09 17:57:33 +00:00
Daniel Harris
53b4482c00 update to version 5.4.3 2000-07-09 17:50:41 +00:00
SADA Kenji
dda929d0b4 ONLY_FOR_ARCHS should be overridden. 2000-07-09 15:08:31 +00:00
Daniel Harris
5ccbe81f42 Committed, thanks. 
PR:		19785
Submitted by:	MAINTAINER
 2000-07-09 13:48:06 +00:00
Motoyuki Konno
a4f59a912b Fix typo. 2000-07-09 10:26:22 +00:00
Will Andrews
dea01634c6 Add listmanager, a cool list manager with many features not found in other 
list managers like majordomo.  For the time being it will remain binary.

Discussed with:	author (albeit this was about 6 months ago)
 2000-07-09 08:46:46 +00:00
Alexander Langer
7bb63aa2e3 Update to version 1.8.1 
PR:		19678
Submitted by:	KATO Tsuguru <tkato@prontomail.ne.jp>
 2000-07-09 08:45:39 +00:00
Akinori MUSHA
dd6644a2bb Update to rev. 2.10. 2000-07-09 03:15:08 +00:00
Will Andrews
a04ccb23d8 Update to 2.6.1, which fixes some security issues (actually, we already 
had some setproctitle(), etc. fixed through patch-aa), fixes memory leaks
in internal ls, and merges in the virtual passwd/shadow features of
BeroFTPD.  This update should solve SA 00:29.  Add WWW to DESCR.
 2000-07-09 02:07:07 +00:00
Ade Lovett
5e98eb7eff Update to 1.2.0 2000-07-08 21:11:37 +00:00
CHOI Junho
3fe4081758 Add master site of tfm files. 2000-07-08 12:08:07 +00:00
Akinori MUSHA
c8e30c553c Update to 0.1.11-pre. 
PR:		ports/19779
Submitted by:	Maintainer
 2000-07-08 07:52:16 +00:00
Akinori MUSHA
72ff8ac5c4 Update to 2.9.5. 
PR:		ports/19776, ports/19777
Submitted by:	Maintainer
 2000-07-08 07:37:19 +00:00
Akinori MUSHA
5042b0369c Fix the wrong MASTER_SITE_SUBDIR. 
PR:		ports/19775
Submitted by:	Maintainer
 2000-07-08 07:32:12 +00:00
David E. O'Brien
86dedbf965 The secondary mastersites were 
Obtained from:	OpenBSD
 2000-07-08 04:27:44 +00:00