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1361 Commits

Author SHA1 Message Date
Pav Lucistnik
aa952fd48f - Resolve LATEST_LINK conflict 2009-05-31 20:31:08 +00:00
Rong-En Fan
1c688417c5 - Fix build on sparc64 by files/patch-include__gmx_cyclecounter.h 
- Fix WITH_MPICH
- Use LOCALBASE for reference to bits installed by others
- Pass maintainership to the submitter
- Pet portlint(1): IGNORE

PR:		ports/133242
Submitted by:	Florian Smeets <flo at kasimir.com>
Approved by:	Stephen Montgomery-Smith <stephen at math.missouri.edu> (maintainer)
 2009-05-30 16:17:14 +00:00
Maho Nakata
0412460a8f Take over. 2009-05-29 03:31:23 +00:00
Joe Marcus Clarke
a13d4ebe2d Chase the goffice update. 2009-05-24 19:44:21 +00:00
Dmitry Marakasov
0d74f73caf Avogadro is an advanced molecular editor designed for cross-platform use in 
computational chemistry, molecular modeling, bioinformatics, materials science,
and related areas. It offers flexible rendering and a powerful plugin
architecture.

WWW: http://avogadro.openmolecules.net/

PR:		134710
Submitted by:	Troels Kofoed Jacobsen <tkjacobsen@gmail.com>
 2009-05-22 22:16:46 +00:00
Pav Lucistnik
d0f33fd4a7 - Chase fftw3 update 2009-05-18 15:08:58 +00:00
Martin Wilke
1fb0bacb5a Chemistry-MacroMol is a toolkit includes basic objects and methods to 
describe macromolecules, a macromolecule is just a molecule that
consists of several "domains". For example, a protein consists
of aminoacid residues, or a nucleic acid consists of bases. Therefore
Chemistry::MacroMol is derived from Chemistry::Mol, with additional
methods to handle the domains.

WWW: http://search.cpan.org/dist/Chemistry-MacroMol/

PR:		ports/134609
Submitted by:	Wen Heping <wenheping at gmail.com>
 2009-05-17 13:00:50 +00:00
Martin Wilke
2b8e184f62 p5-Chemistry-File-PDB reads and writes PDB files. The PDB file format 
is commonly used to describe proteins, particularly those stored in the
Protein Data Bank.

WWW: http://search.cpan.org/dist/Chemistry-File-PDB/

PR:		ports/134612
Submitted by:	Wen Heping <wenheping at gmail.com>
 2009-05-17 12:51:49 +00:00
Martin Wilke
275fec265c Chemistr-Mol is a toolkit includes basic objects and methods to 
describe molecules. It consists of several modules: Chemistry::Mol,
Chemistry::Atom, Chemistry::Bond, and Chemistry::File.

WWW: http://search.cpan.org/dist/Chemistry-Mol/

PR:		ports/134462
Submitted by:	Wen Heping <wenheping at gmail.com>
 2009-05-16 23:29:15 +00:00
Pav Lucistnik
3d5d026633 - Chase readline update 
Reported by:	pointyhat
 2009-05-13 20:22:35 +00:00
Beat Gaetzi
27fe0a252e - Update to 0.99.12 
Approved by:	miwi (mentor)
 2009-05-13 16:08:30 +00:00
Mark Linimon
cfbb13225e Release these ports into the wild due to maintainer-timeouts and no 
response to email.  We hope to see him back again sometime.
 2009-05-12 22:32:29 +00:00
Pav Lucistnik
d61c67ffd3 - Update naively to 0.10.4 and mark BROKEN: does not compile with goffice-0.7.6 2009-05-11 18:38:56 +00:00
Joe Marcus Clarke
3b5c05f9c9 Chase the API changes in goffice-0.7.6. 2009-05-10 19:10:31 +00:00
Martin Wilke
f6941c7c85 - Update to 1.00.00 
PR:		134217
Submitted by:	Wen Heping <wenheping@gmail.com> (maintainer)
 2009-05-10 18:36:41 +00:00
Joe Marcus Clarke
7f277b7ca6 Fix patching by merging two patches for the same file. 2009-05-09 19:07:23 +00:00
Joe Marcus Clarke
be90f09a1b Chase the goffice update. 2009-05-09 04:57:59 +00:00
Maho Nakata
efd040cee7 Update to 20090112 R1 version. 2009-05-08 06:08:44 +00:00
Yen-Ming Lee
c2c78046f6 - reset MAINTAINER per request 
PR:		134253
Submitted by:	giffunip@tutopia.com
 2009-05-06 06:13:08 +00:00
Joe Marcus Clarke
4287b4ba5c Merge some patches from gchemutils SVN to fix the build with goffice 0.7.5. 2009-05-05 05:14:51 +00:00
Joe Marcus Clarke
b2556d2449 Add some more goffice TYPE name conversions. 2009-05-03 17:59:20 +00:00
Joe Marcus Clarke
d07ad1ca0b Fix another TYPE name change with goffice 0.7.5. 2009-05-03 17:51:47 +00:00
Joe Marcus Clarke
302e506b5b Add another goffice-0.7.5 build fix. 2009-05-03 04:44:53 +00:00
Joe Marcus Clarke
e170985c57 Fix the build with goffice 0.7.5. 2009-05-03 04:00:56 +00:00
Joe Marcus Clarke
9ed5de9174 Chase the goffice update. 2009-05-03 00:38:05 +00:00
Martin Wilke
38be6ca769 - Update to 1.1.0 
PR:		133337
Submitted by:	Wen Heping <wenheping@gmail.com>
 2009-04-30 22:43:54 +00:00
Max Brazhnikov
7602b8e28d Update to 2.2.1 2009-04-26 14:49:08 +00:00
Maho Nakata
8f733c55c2 Fix build with NOPORTDOCS, NOPORTEXAMPLES. 
Submitted by:	QAT
 2009-04-24 10:26:05 +00:00
Martin Wilke
64b23ee9d0 Machine Learning PY (mlpy) is a high-performance Python package for 
predictive modeling. It makes extensive use of numpy (http://scipy.org)
to provide fast N-dimensional array manipulation and easy integration of
C code. mlpy provides high level procedures that support, with few lines
of code, the design of rich Data Analysis Protocols (DAPs) for
preprocessing, clustering, predictive classification and feature
selection. Methods are available for feature weighting and ranking, data
resampling, error evaluation and experiment landscaping.The package
includes tools to measure stability in sets of ranked feature lists.

WWW:	http://mlpy.fbk.eu/

PR:		ports/133932
Submitted by:	Wen Heping <wenheping at gmail.com>
 2009-04-23 17:02:20 +00:00
Maho Nakata
89d4fb1fe0 Update to 3.4.0. 2009-04-21 07:45:40 +00:00
Maho Nakata
33bd043b66 Fix build on amd64. 
Spotted by: QAT and pav.
 2009-04-13 05:20:27 +00:00
Yen-Ming Lee
08f9e8f9c4 - Update to 6.02 
PR:		133601
Submitted by:	leeym
Approved by:	maintainer
 2009-04-11 20:37:01 +00:00
Martin Wilke
f406ee2e01 2009-03-22 science/oof: Broken with GCC 4.2 and beyond 
2009-04-06 www/raqdevil: Master site gone, distfiles not fetchable
 2009-04-11 09:58:39 +00:00
Martin Wilke
db4b1a44a3 - Fix DEPRECATED output 
Reported by:	rmport
 2009-04-11 09:52:52 +00:00
Thierry Thomas
fefa5eaa8b - Upgrade to 5.7.3 
Release notes at
	<http://www.abinit.org/Infos_v5.7/release_notes/release_notes.html>

- enable bindings to get the headers
	This requires makemake and GSL.

Approved by:	Maho (maintainer)
 2009-04-10 15:22:53 +00:00
Dennis Herrmann
cf8759b2c9 - Update maintainer mail address 
PR:		ports/133397
Submitted by:	Stephen Montgomery-Smith <stephen@missouri.edu> (maintainer)
Approved by:	tabthorpe (co-mentor)
 2009-04-05 20:50:49 +00:00
Ion-Mihai Tetcu
a5e8a0b9a9 Use NOPORTEXAMPLES and %%PORTEXAMPLES%% where appropiate to fix packaging with 
-DNOPORT* defined.

Prompted by:	QAT QA run
Approved by:	maintainer timeout on QATMail
 2009-04-05 12:29:44 +00:00
Rong-En Fan
583e279a73 - Update to 2.89 2009-04-01 01:32:16 +00:00
Martin Wilke
a8dee6b343 - Allow to build with MAKE_JOBS_SAFE 
PR:		133221
Submitted by:	Roland Smith <rsmith@xs4all.nl> (maintainer)
 2009-03-31 07:52:12 +00:00
Joe Marcus Clarke
2e77166891 Chase the goffice update. 2009-03-28 03:05:24 +00:00
Pav Lucistnik
7f4323449e - Fix for new ruby-gettext 
- Update maintainer's email address

PR:		ports/133046
Submitted by:	Shin'ya Murakami <murashin@epa.scitec.kobe-u.ac.jp> (maintainer)
 2009-03-25 12:05:43 +00:00
Max Brazhnikov
eecc33021e bump PORTREVISION after cmake update 2009-03-24 19:13:32 +00:00
Martin Wilke
4e3a8bfce2 - Update to 0.98 
PR:		132971
Submitted by:	Wen Heping <wenheping@gmail.com> (maintainer)
 2009-03-23 21:51:29 +00:00
Thierry Thomas
3d2ad7d3f8 - Upgrade to 5.6.5; 
- Install libabinit;

- Handle NOPORTDOCS and NOPORTEXAMPLES;

- s/test/regression-test/;

- Don't install under a versionned $PREFIX.

Approved by:	maho (maintainer)
 2009-03-23 18:27:37 +00:00
Pav Lucistnik
b50b662db3 - Fix Fortran linking 
- Add a slaveport so fortran enabled netcdf can be packaged

PR:		ports/132430
Submitted by:	thierry
Approved by:	maintainer timeout (14 days)
 2009-03-22 22:09:27 +00:00
Martin Wilke
d4d8ed5164 Geo::ReadGRIB is an object Perl module that provides read 
access to data distributed in GRIB files. Specifically,
it is wrote to access NOAA Wavewatch III marine weather
model forecasts which are packaged as GRIB.

WWW:	http://search.cpan.org/dist/Geo-ReadGRIB/

PR:		ports/132776
Submitted by:	Wen Heping <wenheping at gmail.com>
 2009-03-22 15:18:46 +00:00
Maho Nakata
dcfda0bf17 Update to 1.6.11. 2009-03-17 08:20:04 +00:00
Thierry Thomas
6a26b6b50c Fix plist with -DNOPORTDOCS. 
Reportded by:	QAT
 2009-03-16 22:34:19 +00:00
Martin Wilke
24f41cf769 - Update to 11.6.17 
PR:		131733
Submitted by:	Wen Heping <wenheping@gmail.com> (maintainer)
 2009-03-16 21:42:23 +00:00
Mark Linimon
c4e3a5d64a Mark as broken on sparc64: fails to compile. 2009-03-16 09:35:28 +00:00