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882 Commits

Author SHA1 Message Date
Edwin Groothuis
4a1e6b5974 [patch] cleanup non-supported FreeBSD versions 
PR:		ports/111728
Submitted by:	Edwin Groothuis <edwin@mavetju.org>
Approved by:	maintainer timeout
 2007-05-02 07:15:46 +00:00
Edwin Groothuis
f42468ac8f [patch] cleanup non-supported FreeBSD versions 
PR:		ports/111726
Submitted by:	Edwin Groothuis <edwin@mavetju.org>
Approved by:	maintainer timeout
 2007-05-02 07:15:18 +00:00
Edwin Groothuis
4e8e11bf73 [patch] cleanup non-supported FreeBSD versions 
PR:		ports/111725
Submitted by:	Edwin Groothuis <edwin@mavetju.org>
Approved by:	maintainer timeout
 2007-05-02 07:14:50 +00:00
Edwin Groothuis
c817a83fdc [patch] cleanup non-supported FreeBSD versions 
PR:		ports/111724
Submitted by:	Edwin Groothuis <edwin@mavetju.org>
Approved by:	maintainer timeout
 2007-05-02 07:13:53 +00:00
Tong LIU
17b108023a Use my @FreeBSD.org address. 
Approved by:	delphij (mentor)
 2007-04-30 06:27:41 +00:00
Cheng-Lung Sung
f1b8c87794 - Update to 4.5 2007-04-24 10:24:51 +00:00
Martin Wilke
c3defe91a4 - Unbreak 
- Add backup MASTER_SITES

PR:		111963
Submitted by:	Jason Harris <jharris@widomaker.com>
 2007-04-21 15:26:54 +00:00
Kris Kennaway
30536eed17 BROKEN: Unfetchable 2007-04-20 08:03:12 +00:00
Edwin Groothuis
dd6b0c2e8c [patch] cleanup non-supported FreeBSD versions 
PR:		ports/111727
Submitted by:	Edwin Groothuis <edwin@mavetju.org>
Approved by:	Bob Zimmermann <rpz@cse.wustl.edu>
 2007-04-16 21:18:53 +00:00
Edwin Groothuis
3783392432 Remove always-true condition due to OSVERSION 2007-04-16 11:58:10 +00:00
Edwin Groothuis
aa0f192c42 - Remove unreachable OSVERSION code. 
- Make portlint happier
 2007-04-16 11:57:17 +00:00
Pav Lucistnik
0925dae118 - Fix after objformat removal 
Reported by:	pointyhat
 2007-03-28 17:31:59 +00:00
Martin Wilke
c3b46463f4 - Update to 1.5-beta2 
- Pass maintainership to submitter

PR:             110621
Submitted by:   Nemo Liu<nemoliu@gmail.com>
 2007-03-27 08:01:54 +00:00
Gabor Kovesdan
7a850f3a0c - MASTER_SITE is back, remove BROKEN 
PR:		ports/109954
Submitted by:	Tsurutani Naoki <turutani@scphys.kyoto-u.ac.jp>
 2007-03-16 21:16:36 +00:00
Mark Linimon
979cd8dcb7 Reset razi@genet.sickkids.on.ca due to maintainer-timeouts and no response to 
email.

Hat:		portmgr
 2007-03-14 08:18:21 +00:00
Mark Linimon
426a0cc0f1 Reset dbader@eece.unm.edu due to maintainer-timeouts. 
Hat:		portmgr
 2007-03-11 03:21:18 +00:00
Mark Linimon
74f43621e7 Reset dbader@eece.unm.edu due to maintainer-timeout. While here, fix fetch. 2007-03-11 03:20:27 +00:00
Mark Linimon
1fb31bef8c Reset chuynh@biolateral.com.au: address bounces. 
Hat:		portmgr
 2007-03-10 20:20:10 +00:00
Martin Wilke
d427c1e56d - Update to 4.96 
PR:             110080
Submitted by:   Fernan Aguero<fernan@iib.unsam.edu.ar> (maintainer)
 2007-03-09 11:26:16 +00:00
Martin Wilke
572ad4f218 - Update to 34.26.2 
PR:             110079
Submitted by:   Fernan Aguero<fernan@iib.unsam.edu.ar> (maintainer)
 2007-03-09 11:26:13 +00:00
Martin Wilke
92bc0115f8 - Release distfile was renamed. 
PR:             110078
Submitted by:   Fernan Aguero<fernan@iib.unsam.edu.ar> (maintainer)
 2007-03-08 13:17:26 +00:00
Kris Kennaway
bd7aa23ad2 BROKEN: Unfetchable 2007-02-27 04:55:59 +00:00
Dirk Meyer
86102784f5 - mark ignore on FreeBSD 5.x 
Approved by:	maintainer
 2007-02-19 03:39:29 +00:00
Kris Kennaway
de78dd974b Schedule these broken ports for removal on 2007-04-10 if they are still 
broken at that time and no fix has been submitted.
 2007-02-11 01:23:35 +00:00
Maho Nakata
6235387960 Update to 0.99rc6. 
PR:		108940
Submitted by:	CHAO Shin
 2007-02-09 00:11:54 +00:00
Kris Kennaway
4c7fb3a8cb BROKEN: Does not build 2007-02-05 00:08:52 +00:00
Kris Kennaway
ae994c8ea8 Use libtool port instead of included version to avoid objformat a.out botch 2007-02-01 02:42:05 +00:00
Dirk Meyer
e904a42961 - add category gnustep 
PR:		103931
Approved by:	pav
 2007-01-31 18:18:14 +00:00
Maho Nakata
9dba1af857 Build fix. 
Submitted by:	kris via pointyhat and pav.
 2007-01-29 02:13:52 +00:00
Ion-Mihai Tetcu
124ca189fb Update to 3.66 
PR:		ports/108434
Submitted by:	Marcelo Araujo
 2007-01-27 21:23:52 +00:00
Vasil Dimov
885510efe1 Fix master sites, un-deprecate and update biology/recombine to 1.41. 2007-01-25 12:22:50 +00:00
Vasil Dimov
b82ef03e30 Remove expired leaf port: 
2007-01-07 biology/coalesce: distfile disappeared from homepage

Actually the software is still available at:
http://evolution.gs.washington.edu/lamarc/coalesce.html, but it is
not supported by the authors. Last version is from 1995 and
biology/fluctuate can be used instead.
 2007-01-25 11:25:40 +00:00
Vasil Dimov
c4499324f3 Get rid of biology/coalesce dependency, it is deprecated and will be removed 
shortly.
 2007-01-25 11:10:43 +00:00
Vasil Dimov
4b65027977 Fix master site and un-deprecate 2007-01-25 11:01:25 +00:00
Martin Wilke
e52225d8c8 - Fix typo 2007-01-23 13:05:24 +00:00
Rong-En Fan
b06ef1af5b - Project moves to a new home. Change MASTER_SITES and WWW 
PR:		ports/108214
Submitted by:	Thomas Abthorpe <thomas at goodking.ca>
Approved by:	Fernan Aguero <fernan at iib.unsam.edu.ar> (maintainer)
 2007-01-22 23:22:53 +00:00
Maho Nakata
4406ddf947 Fix build. 
Submitted by:	kris via pointyhat.
 2007-01-19 06:41:03 +00:00
Maho Nakata
0f3556420c Forgot to commit a patch. Fixes build. 
Submitted by:	kris via pointyhat.
 2007-01-19 02:19:06 +00:00
Maho Nakata
8599517b90 * Migrate to gfortran. 
* Bump port revision.
 2007-01-17 05:30:10 +00:00
Boris Samorodov
22f2e343c5 . change dependencies: shells/bash2 -> shells/bash; 
. bump PORTREVISION (RUN_DEPENDS changes);
. for converters/konwert:
  - introduce PATCHLEVEL to be used instead of PORTREVISION at filenames;
  - update to new PATCHLEVEL=11.

PR:		107000 [1], 107046 [2], 107106 [3], 107114 [4]
Submitted by:	bsam (me)
Approved by:	all maintainers timeout three and a half week:
		mij at bitchx.it             [1]
		j.koopmann at seceidos.de    [2]
		chuynh at biolateral.com.au  [3]
		alexs at snark.rinet.ru      [4]
 2007-01-16 18:21:00 +00:00
Maho Nakata
0189d58a25 * Migrate to gfortran. 
* Bump port revision.
* fix build [1].

Submitted by:	kris [1]
 2007-01-16 04:41:41 +00:00
Dirk Meyer
d7f59ea8de - update to use new bsd.gnustep.mk 
Approved by:	gurkan@linuks.mine.nu
 2007-01-13 03:57:25 +00:00
Maho Nakata
667bd5ea91 * Migrate to gfortran. 
* Bump port revision.
 2007-01-12 12:21:21 +00:00
Maho Nakata
709a18cca2 Using gfortran42 only. not using gcc42. 
Bump portrevision.
 2007-01-12 05:40:57 +00:00
Maho Nakata
5d7fcfc438 Using only gfortran42. not gcc42. 
Bump portrevision.
 2007-01-12 05:39:18 +00:00
Maho Nakata
602b708bfb * Add dummy knob WANT_FORTRAN for future gfortran 
migration. currently it is not buildable with gfrotran42.
* Honor FC and FFLAGS.
 2007-01-09 02:37:43 +00:00
Maho Nakata
8ae475f6a8 migrated to gfortran. 2007-01-09 01:48:41 +00:00
Maho Nakata
397f4ace33 Migrated to gfortran. 2007-01-09 01:47:06 +00:00
Dirk Meyer
5779dde040 The BioCocoa framework provides developers with the opportunity to add 
support for reading and writing BEAST, Clustal, EMBL, Fasta, GCG-MSF, GDE,
Hennig86, NCBI, NEXUS, NONA, PDB, Phylip, PIR, Plain/Raw, Swiss-Prot and
TNT files by writing only three lines of code.
The framework is written in Cocoa (Objective-C).

WWW: http://bioinformatics.org/biococoa/
 2006-12-30 09:20:54 +00:00
Martin Wilke
96867a420d - Update to 1.0.1 
- Update MASTER_SITES
- Pass maintainership to submitter

PR:		ports/107246
Submitted by:	Fernan Aguero<fernan@iib.unsam.edu.ar> (maintainer)
 2006-12-29 23:40:53 +00:00