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Author SHA1 Message Date
Mark Linimon
c58d95ca11 Mark as x86-specific: does not support big-endian architectures. 
Approved by:	portmgr (sparc64 blanket)
 2015-09-25 21:27:53 +00:00
Mark Linimon
4dbd6a6338 Mark as broken on sparc64: assertion fails. 
Approved by:	portmgr (sparc64 blanket)
 2015-09-25 21:26:02 +00:00
Mark Linimon
f1fa5e9553 Mark as broken on sparc64: fails to build. 
Approved by:	portmgr (sparc64 blanket)
 2015-09-25 21:24:21 +00:00
Mark Linimon
aae533f52f Mark as broken on sparc64 and others: invokes i386 assembler. 
Approved by:	portmgr (sparc64 blanket)
 2015-09-25 21:22:20 +00:00
Mark Linimon
2ba4e4bdbd Mark as broken on sparc64: not yet ported to this architecture. 
Approved by:	portmgr (sparc64 blanket)
 2015-09-25 21:21:00 +00:00
Mark Linimon
8c26b8cbf9 Mark as broken on sparc64: fails to build. 
Approved by:	portmgr (sparc64 blanket)
 2015-09-25 21:18:53 +00:00
Mark Linimon
b4409b850f Mark as broken on sparc64: fails to build. 
Approved by:	portmgr (sparc64 blanket)
 2015-09-25 21:17:50 +00:00
Mark Linimon
12f0176c58 Mark as broken on non-x86: fails to build. 
Approved by:	portmgr (sparc64 blanket)
 2015-09-25 21:15:22 +00:00
Mark Linimon
ebd246c3ee Mark as broken on sparc64: fails to build. 
Approved by:	portmgr (sparc64 blanket)
 2015-09-25 21:05:27 +00:00
Mark Linimon
e30c267545 Mark as broken on sparc64. 
Approved by:	portmgr (sparc64 blanket)
 2015-09-25 21:04:16 +00:00
Jung-uk Kim
9f9779d6b8 Remove redundant PostgreSQL version restriction as we do not support 8.x. 2015-09-25 21:03:09 +00:00
Mark Linimon
539967edf4 Use trick from arm/powerpc to fix build on sparc64. 
Approved by:	portmgr (sparc64 blanket)
 2015-09-25 21:00:28 +00:00
William Grzybowski
3860a006fb devel/py-cffi: update to 1.2.1 2015-09-25 20:59:55 +00:00
William Grzybowski
6b123540d4 dns/inadyn-mt: update to 02.24.47 2015-09-25 20:55:24 +00:00
Ruslan Makhmatkhanov
ea6db28b34 Let addport script to use svnlite if available 
1. Check if svnlite is available and use it by default, else: use svn
2. Dehardcode svn binary name in shell calls, to make both svn/svnlite
work

Approved by:	crees (maintainer)
 2015-09-25 19:29:48 +00:00
Ruslan Makhmatkhanov
4b97f1e0d6 devel/py-robotframework-pabot: update to 0.18 
From Mikko Korpela:

This release fixes one annoying bug that has been there since the beginning of
pabot: suite setups and teardowns were logged only from one of the running
processes. Now it logs them from all - so be prepared for multiple setups and
teardowns in logs.

PR:		202748
Submitted by:	vladimir.chukharev@gmail.com (maintainer)
 2015-09-25 19:02:59 +00:00
Ruslan Makhmatkhanov
eaad9b87fb devel/py-robotframework: update to 2.9.1 
Robot Framework 2.9.1 is a bug fix release that fixes few high
priority bugs in Robot Framework 2.9.

PR:		202746
Submitted by:	vladimir.chukharev@gmail.com (maintainer)
 2015-09-25 19:01:15 +00:00
Ruslan Makhmatkhanov
8e9799c052 biology/grappa: define license (GPLv2) 
As per the web site, the license for GRAPPA is GPLv2
https://www.cs.unm.edu/~moret/GRAPPA/

PR:		202426
Submitted by:	George <george@nycbug.org>
 2015-09-25 18:55:08 +00:00
Ryan Steinmetz
2ac23fcd8c - Update to 0.11.2 2015-09-25 18:51:51 +00:00
Sunpoet Po-Chuan Hsieh
4e9ef45064 - Update to 4.1.1 
Changes:	https://github.com/collectiveidea/delayed_job/blob/master/CHANGELOG.md
 2015-09-25 18:49:44 +00:00
Sunpoet Po-Chuan Hsieh
c835991d6f - Update to 2.0.1 
Changes:	https://github.com/doudou/flexmock/blob/master/CHANGES
 2015-09-25 18:49:39 +00:00
Sunpoet Po-Chuan Hsieh
a31da37fa6 - Add LICENSE 2015-09-25 18:49:34 +00:00
Sunpoet Po-Chuan Hsieh
4d7a78015c - Add LICENSE 2015-09-25 18:49:30 +00:00
Sunpoet Po-Chuan Hsieh
4b82ca8d62 - Add LICENSE 2015-09-25 18:49:25 +00:00
Sunpoet Po-Chuan Hsieh
aa0b75a056 - Add LICENSE 2015-09-25 18:49:21 +00:00
Sunpoet Po-Chuan Hsieh
6ca0852219 - Add LICENSE 2015-09-25 18:49:16 +00:00
Sunpoet Po-Chuan Hsieh
45e918a50e - Add LICENSE_FILE 
Approved by:	portmgr (blanket)
 2015-09-25 18:49:12 +00:00
Sunpoet Po-Chuan Hsieh
9f8c6f3ec3 - Add LICENSE_FILE 2015-09-25 18:49:08 +00:00
Sunpoet Po-Chuan Hsieh
1b7a7fb323 - Update to 0.10.2 
- Add LICENSE_FILE

Changes:	https://github.com/pry/pry/blob/master/CHANGELOG.md
 2015-09-25 18:49:03 +00:00
Sunpoet Po-Chuan Hsieh
8fb57fb904 - Update to 2.78 
Changes:	http://search.cpan.org/dist/Encode/Changes
 2015-09-25 18:48:57 +00:00
Ruslan Makhmatkhanov
164e1138b8 BWA is a program for aligning sequencing reads against a large reference 
genome (e.g. human genome). It has two major components, one for read shorter
than 150bp and the other for longer reads.

WWW: http://sourceforge.net/projects/bio-bwa/

PR:		203158
Submitted by:	Jason Bacon <jwbacon@tds.net>
 2015-09-25 18:39:36 +00:00
Ruslan Makhmatkhanov
e20b08bbfc Fast indexing and retrieval of FASTA records from flat file data bases. 
WWW: http://sourceforge.net/projects/cdbfasta/

PR:		203233
Submitted by:	Jason Bacon <jwbacon@tds.net>
 2015-09-25 18:37:24 +00:00
Ruslan Makhmatkhanov
835d05fd2c Simple and quick FastQ and FastA tool for file reading and conversion. 
WWW: https://github.com/fstrozzi/Fastool

PR:		203293
Submitted by:	Jason Bacon <jwbacon@tds.net>
 2015-09-25 18:35:14 +00:00
Ruslan Makhmatkhanov
2b9505d069 FastTree infers approximately-maximum-likelihood phylogenetic trees from 
alignments of nucleotide or protein sequences. FastTree can handle alignments
with up to a million of sequences in a reasonable amount of time and memory.

WWW: http://www.microbesonline.org/fasttree/

PR:		203295
Submitted by:	Jason Bacon <jwbacon@tds.net>
 2015-09-25 18:34:29 +00:00
Ruslan Makhmatkhanov
4d7b4d8d90 The FASTX-Toolkit is a collection of command line tools for Short-Reads 
FASTA/FASTQ files preprocessing.

WWW: http://hannonlab.cshl.edu/fastx_toolkit/

PR:		203318
Submitted by:	Jason Bacon <jwbacon@tds.net>
 2015-09-25 18:33:18 +00:00
Ruslan Makhmatkhanov
036ac0906d Gordon's text utilities. 
WWW: https://github.com/agordon/libgtextutils

PR:		203309
Submitted by:	Jason Bacon <jwbacon@tds.net>
 2015-09-25 18:31:28 +00:00
Kurt Jaeger
79be6f7722 net/isboot-kmod: 0.2.10 -> 0.2.11 
- patches upstreamed
- added header values to be more independent from base iSCSI
- limited builtin initiator to handle login sequence

PR:		203324
Submitted by:	Daisuke Aoyama <aoyama@peach.ne.jp> (upstream)
Approved by:	John Nielsen <john@jnielsen.net> (maintainer)
 2015-09-25 17:50:04 +00:00
Antoine Brodin
4993e91ad0 Unbreak 2015-09-25 17:46:55 +00:00
Antoine Brodin
385c014620 Fix packaging 2015-09-25 17:43:43 +00:00
Ruslan Makhmatkhanov
64c5bbae05 sysutils/ldap-account-manager: update to 5.1 
PR:		202815
Submitted by:	basil@vpm.net.ua (maintainer)
 2015-09-25 17:11:10 +00:00
Jung-uk Kim
cd0157ff4c Fix a typo for x11/nvidia-driver-304. 
Spotted by:	Lena at lena dot kiev dot ua
Approved by:	danfe (maintainer, implicit)
 2015-09-25 15:40:42 +00:00
Dmitry Marakasov
60eea50c4a - Add LICENSE 
- Pet portlint
- Merge REINPLACE_CMD into patch
- Regenerate patches with `make makepatch`
 2015-09-25 15:18:14 +00:00
Dmitry Marakasov
dbafd1388b - Add LICENSE 
- Fix WWW:
 2015-09-25 15:18:13 +00:00
Dmitry Marakasov
ebe4f61556 - Add LICENSE 
- Pet portlint
- Add NO_ARCH
- Switch to options helpers
- Don't cat pkg-message from Makefile
 2015-09-25 15:18:10 +00:00
Dmitry Marakasov
b41b8fc38b - Add LICENSE 
- Strip libraries
- Pet portlint
- Regenerate patches with `make makepatch`
 2015-09-25 15:18:05 +00:00
Dmitry Marakasov
91ab4d4b05 - Add LICENSE_FILE 
- Strip libraries
 2015-09-25 15:18:03 +00:00
Dmitry Marakasov
f0e5d582fe - Add LICENSE 
- Strip library
- Regenerate patches with `make makepatch`
 2015-09-25 15:18:01 +00:00
Dmitry Marakasov
2eca7e4753 - Add LICENSE 
- Regenerate patches with `make makepatch`
 2015-09-25 15:17:57 +00:00
Dmitry Marakasov
31e1db43ed - Add LICENSE 
- Silence patching
 2015-09-25 15:17:54 +00:00
Dmitry Marakasov
59259e6e53 - Add LICENSE_FILE 
- Cosmetic fix
- Regenerate patches with `make makepatch`
 2015-09-25 15:17:51 +00:00