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32 Commits

Author SHA1 Message Date
Brad Davis
4417c1e084 Update biology/paml to 4.8a and unbreak. 
PR:		199264
Submitted by:	Joseph Mingrone <jrm@ftfl.ca>
Approved by:	bdrewery (mentor)
 2015-04-10 15:39:01 +00:00
Baptiste Daroussin
f4e1a5b6b2 Mark as broken unfetchable ports 2015-04-05 17:55:35 +00:00
Wen Heping
6f070619c8 - Pass maintainership to submitter 
PR:		196859
Submitted by:	Joseph Mingrone<jrm@ftfl.ca>
 2015-01-19 12:11:25 +00:00
Baptiste Daroussin
99a3e8559c Cleanup plist 2014-10-20 07:10:48 +00:00
Adam Weinberger
a84c115a09 Convert a bunch of EXTRACT_SUFX=... into USES=tar:... 
Approved by:	portmgr (not really, but touches unstaged ports)
 2014-07-29 19:11:51 +00:00
Wen Heping
9eb7654b4f - Update to 4.8 
- Reset maintainer to ports@
 2014-04-05 10:56:52 +00:00
Emanuel Haupt
3fb1d458f5 Support staging 2014-03-14 12:59:33 +00:00
Martin Wilke
059bf913b9 - Convert USE_GMAKE to USES 2014-03-13 07:41:34 +00:00
Emanuel Haupt
094043c26a Remove trailing whitespaces from category biology 2014-02-21 13:35:26 +00:00
Emanuel Haupt
5005b67362 According to the Porter's Handbook (5.12.2.3.) default options must be added to 
OPTIONS_DEFINE. This policy has been implemented only recently that's why we
have many ports violating this policy.

This patch adds the default options specified in the Porter's Handbook to
OPTIONS_DEFINE where they are being used. Ports maintained by
gnome@FreeBSD.org, kde@FreeBSD.org and x11@FreeBSD.org have been excluded.

Approved by:    portmgr (bapt)
 2014-02-10 13:54:26 +00:00
Baptiste Daroussin
56fcf8379f Fix properties on pkg-plist 2014-01-21 23:18:05 +00:00
Adam Weinberger
955d37365b Convert biology to MDOCS and MEXAMPLES 2014-01-03 15:46:52 +00:00
Baptiste Daroussin
7055ff02f1 Add NO_STAGE all over the place in preparation for the staging support (cat: biology) 2013-09-20 15:55:44 +00:00
Wen Heping
b3107f6cbf - Trim Makefile headers 2013-06-01 14:22:35 +00:00
Martin Wilke
a9481afc8a - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
Wen Heping
0d034d05fe - Update to 4.4c 2010-09-08 00:16:45 +00:00
Wen Heping
4834e5f360 - Update to 4.4a 
- Update my mail address to FreeBSD
 2010-04-20 08:42:04 +00:00
Martin Wilke
a69f9725b4 - Update to 4.3 
PR:		137625
Submitted by:	Wen Heping <wenheping@gmail.com> (maintainer)
 2009-08-13 17:00:04 +00:00
Martin Wilke
e0f3b63065 - Update to 4.2b 
PR:		132249
Submitted by:	Wen Heping <wenheping@gmail.com>
 2009-03-02 19:02:48 +00:00
Martin Wilke
856c865e68 - Update to 4.2 
PR:		129895
Submitted by:	Wen Heping <wenheping@gmail.com> (maintainer)
 2008-12-25 19:56:07 +00:00
Martin Wilke
8e93b103e5 - Update to 4.1 
- Pass maintainership to submitter

PR:		127683
Submitted by:	Wen heping <wenheping@gmail.com>
 2008-09-30 08:54:55 +00:00
Mark Linimon
426a0cc0f1 Reset dbader@eece.unm.edu due to maintainer-timeouts. 
Hat:		portmgr
 2007-03-11 03:21:18 +00:00
Sergey Matveychuk
2e790c2143 - Update to 3.15 
PR:		ports/96941
Submitted by:	Paul Schmehl <pauls@utdallas.edu>
Approved by:	maintainer timeout
 2006-05-20 18:52:19 +00:00
Marcus Alves Grando
12417fc462 Update to 3.14b 
Update MASTER_SITES
Add SHA256
Remove extra TABS

PR:		88007
Submitted by:	Jean Milanez Melo <jmelo@freebsdbrasil.com.br>
Approved by:	maintainer timeout, 14 days
 2005-11-10 01:21:42 +00:00
Kevin Lo
53d3206a26 Update to 3.14 
PR: ports/72422
Submitted by: Choe, Cheng-Dae <whitekid@gmail.com>
 2004-11-06 03:55:37 +00:00
Trevor Johnson
8232e82f85 SIZEify (maintainer timeout) 2004-03-31 03:12:58 +00:00
Sergey A. Osokin
958842c5c6 Cosmetic fix: use %%DOCSDIR%% macro. 
No functionally changes.

Submitted by:	Oleg Karachevtsev <ok@etrust.ru>
A part of PR:	57992
 2003-10-22 09:37:18 +00:00
Christian Weisgerber
5eb743da03 * Update to 3.13. 
PR:		48255
Submitted by:	David A. Bader <dbader@eece.unm.edu>

* Also honor CC/CFLAGS.
 2003-02-14 23:21:23 +00:00
Johann Visagie
22c3e2138e - Update to version 3.1 
PR:		30176
Submitted by:	David A. Bader <dbader@eece.unm.edu> (MAINTAINER)
 2001-08-29 12:00:08 +00:00
Johann Visagie
fcd2e1988c Update to version 3.04 
PR:		28614
Submitted by:	David A. Bader <dbader@eece.unm.edu> (MAINTAINER)
 2001-07-03 08:17:14 +00:00
Michael Haro
5fda8a9c36 update to 3.03 
PR:		26094
Submitted by:	    maintainer
 2001-04-02 05:16:26 +00:00
Steve Price
54c8d2b706 Add paml version 3.01. 
A set of utilities for performing Phylogenetic Analysis by Maximum
Likelihood (PAML).

PR:		19753
Submitted by:	David A. Bader <dbader@cielo.eece.unm.edu>
 2000-07-10 03:21:05 +00:00