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87 Commits

Author SHA1 Message Date
Muhammad Moinur Rahman
c63632a1c8 biology/seaview: Update version 4.6=>4.6.1 
- Add PORTSCOUT to ignore non-existent 4.6.1.3 version
 2017-04-11 18:58:18 +00:00
Muhammad Moinur Rahman
295a6055d4 biology/seaview: Update version 4.5.4.8=>4.6 
- UNBREAK
 2016-06-10 11:06:42 +00:00
Antoine Brodin
c31defa0fc Deprecate ports broken for more than 6 months 2016-06-03 16:44:58 +00:00
Mathieu Arnold
7f4572eae4 Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c. 
With hat:	portmgr
Sponsored by:	Absolight
 2016-04-01 13:29:15 +00:00
John Marino
b30f22964e biology/seaview: Broken, Does not fetch (checksum mismatch) 2015-11-02 08:14:30 +00:00
Muhammad Moinur Rahman
7d14f3b04f biology/seaview: Update version 4.5.4.7=>4.5.4.8 2015-10-20 11:51:32 +00:00
Muhammad Moinur Rahman
b9b8b6782d biology/seaview: Update version 4.5.4.6=>4.5.4.7 2015-10-01 10:02:21 +00:00
Muhammad Moinur Rahman
9787ec44da biology/seaview: Update version 4.5.4.4=>4.5.4.6 2015-09-15 14:44:47 +00:00
Muhammad Moinur Rahman
9885162820 biology/seaview: Update version 4.5.4=>4.5.4.4 2015-05-22 11:09:23 +00:00
John Marino
0d28709839 biology/seaview: Unbreak -- it fetches fine 
The second MASTER_SITES entry worked fine, so this must have been a
transient fetch problem.  I removed the first entry which is still
failing though.

Approved by:	blanket
 2015-04-11 15:49:57 +00:00
Baptiste Daroussin
f4e1a5b6b2 Mark as broken unfetchable ports 2015-04-05 17:55:35 +00:00
Muhammad Moinur Rahman
219a0f8115 biology/seaview: Update version 4.5.3.4=>4.5.4 
- Remove dependency for libpdf as removed by upstream
 2015-03-24 10:15:30 +00:00
Muhammad Moinur Rahman
da8394e59b biology/seaview: UNBREAK 
- Update version 4.5.2=>4.5.3.4
- Add LICENSE (GPLv3)
- Remove PDFLIBS as OPTIONS as it is no loner an optional requirement

PR:		198602
Submitted by:	pi
Approved by:	bapt marino (implicit)
 2015-03-16 12:07:49 +00:00
Antoine Brodin
9939b90892 Mark BROKEN: Fails to link, tries to use internal fltk symbols 
c++ -o seaview   seaview.o custom.o use_mase_files.o regions.o load_seq.o align.o xfmatpt.o comlines.o resource.o nexus.o viewasprots.o racnuc_fetch.o concatenate.o statistics.o trees.o treedraw.o addbootstrap.o least_squares_brl.o pseudoterminal.o unrooted.o pdf_or_ps.o svg.o threads.o Fl_Native_File_Chooser_FLTK.o raa_acnuc.o parser.o md5.o zsockr.o misc_acnuc.o dnapars.o protpars.o seq.o phylip.o lwl.o bionj.o phyml_util.o  \
      -L/usr/local/lib -lfltk_images -lfltk  \
     -lXft -lXext -lfontconfig -ljpeg -lpng -lXinerama -L/usr/local/lib -lpdf \
         -lX11 -lm -lz -pthread
seaview.o: In function `clipboard_contains_alignment(char const*)':
seaview.cxx:(.text+0x1c14): undefined reference to `fl_selection_buffer'

Reported by:	pkg-fallout
 2015-02-21 07:35:32 +00:00
Muhammad Moinur Rahman
6d2e8f9aeb Change my non-FreeBSD MAINTAINER mail to bofh@ 
Approved by:	bapt
 2014-12-24 00:14:11 +00:00
Baptiste Daroussin
a2b3272168 Cleanup plist 2014-12-20 17:27:08 +00:00
Gerald Pfeifer
15945f8122 Update the default version of GCC in the Ports Collection from GCC 4.7.4 
to GCC 4.8.3.

Part II, Bump PORTREVISIONs.

PR:		192025
Tested by:	antoine (-exp runs)
Approved by:	portmgr (implicit)
 2014-09-10 20:50:31 +00:00
Martin Wilke
015670c696 - Update to 4.5.2 
- Pass maintainership to submitter

PR:		190564
 2014-06-04 06:28:56 +00:00
Martin Wilke
03fe751588 - Update to 4.5.1 
PR:		187975
Submitted by:	Ports Fury
 2014-05-21 05:40:53 +00:00
Martin Wilke
5ba557af23 - Stage support 
- Update to version 4.4.3

PR:		187041
Submitted by:	ports fury
 2014-02-27 08:46:42 +00:00
Baptiste Daroussin
a2275161bd In preparation for making libtool generate libraries with a sane name, fix all 
LIB_DEPENDS in biology
 2013-12-11 14:43:51 +00:00
Baptiste Daroussin
7055ff02f1 Add NO_STAGE all over the place in preparation for the staging support (cat: biology) 2013-09-20 15:55:44 +00:00
Alex Kozlov
d4041784dc - Remove MAKE_JOBS_SAFE variable 
Approved by:	portmgr (bdrewery)
 2013-08-14 22:35:50 +00:00
Martin Wilke
0896ca6624 - Update to 4.4.2 
PR:		180515
Submitted by:	Ports Fury
 2013-07-15 14:49:02 +00:00
Martin Wilke
f811ff18d3 - Update to 4.4.1 
PR:		177257
Submitted by:	Ports Fury
 2013-03-26 01:08:40 +00:00
Max Brazhnikov
81c27c891a Bump PORTREVISION after DESKTOP_ENTRIES update 2013-01-23 15:00:18 +00:00
Max Brazhnikov
5dd37213f5 - Update DESKTOP_ENTRIES: 
* rephrase Comment field or use port ${COMMENT} if appropriate
  * adjust Icon field according to the Desktop Entry Specification
  * update Categories field: remove deprecated category Application;
    set main category, if missing
- Remove indefinite article and/or rephrase COMMENT
- Trim Makefile header
- Other minor changes
 2013-01-07 02:07:26 +00:00
Pawel Pekala
ff942cf270 - Update to version 4.4.0 
- Mark MAKE_JOBS_SAFE
- Make dependency on print/pdflib optional
- Switch to PLIST_FILES

While here:
- Add missing deps
- Add desktop entry

PR:		ports/172498
Submitted by:	KATO Tsuguru <tkato432@yahoo.com>
Feature safe:	yes
 2012-10-30 20:31:14 +00:00
Thomas Abthorpe
d46aafc64e - Reassign to the heap at maintainer's request 2012-10-01 14:45:16 +00:00
Dirk Meyer
2b74a89bc8 - update png to 1.5.10 2012-06-01 05:26:28 +00:00
Alex Dupre
1b91e235c3 Chase pdflib.so version and bump PORTREVISION accordingly. 2012-01-10 11:41:37 +00:00
Pietro Cerutti
c56e966dc9 - unbreak 
Feature safe:	yes
 2011-11-17 13:22:29 +00:00
Pav Lucistnik
7bd53bb5b7 - Mark BROKEN: does not compile with new fltk 
Reported by:	pointyhat
 2011-11-04 22:19:36 +00:00
Martin Wilke
a9481afc8a - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
Dirk Meyer
de78af3ac5 - update to 1.4.1 
Reviewed by:	exp8 run on pointyhat
Supported by:	miwi
 2010-03-28 06:47:48 +00:00
Pietro Cerutti
c6a2501ef2 - Chase x11-toolkits/fltk update 2010-03-23 21:14:39 +00:00
Dirk Meyer
ca9c60461c - update to jpeg-8 2010-02-05 11:46:55 +00:00
Dirk Meyer
eca78ec61b - bump all port that indirectly depends on libjpeg and have not yet been bumped or updated 
Requested by:	edwin
 2009-07-31 13:57:52 +00:00
Martin Wilke
3e4ed01146 - Remove unneeded dependency from gtk12/gtk20 [1] 
- Remove USE_XLIB/USE_X_PREFIX/USE_XPM in favor of USE_XORG
- Remove X11BASE support in favor of LOCALBASE or PREFIX
- Use USE_LDCONFIG instead of INSTALLS_SHLIB
- Remove unneeded USE_GCC 3.4+

Thanks to all Helpers:
	Dmitry Marakasov, Chess Griffin, beech@, dinoex, rafan, gahr,
	ehaupt, nox, itetcu, flz, pav

PR:		116263
Tested on:	pointyhat
Approved by:	portmgr (pav)
 2008-04-19 17:56:05 +00:00
Martin Wilke
5afc678aac - Remove USE_XLIB/USE_X_PREFIX/USE_XPM in favor of USE_XORG 
- Bump PORTREVISION

Approved by:	portmgr (xorg cleanup)
 2008-03-23 16:44:09 +00:00
Florent Thoumie
d4f0d0048a - Welcome X.org 7.2 \o/. 
- Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}.
- Bump PORTREVISION for ports intalling files in ${X11BASE}.
 2007-05-19 20:36:56 +00:00
Alex Dupre
8e8d970bfa Chase pdf library and bump PORTREVISION. 2006-10-09 08:18:35 +00:00
Marcus Alves Grando
843d1a4279 - Update to 2006.02.13 
PR:		95281
Submitted by:	maintainer
 2006-04-05 01:58:03 +00:00
Sam Lawrance
fed5ed01f9 Update to 2006.01.25. 
PR:		ports/93051
Submitted by:	Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
 2006-02-09 10:33:47 +00:00
Tim Bishop
b9073575f7 - New upstream version; two patches incorporated. 
PR:		90140
Submitted by:	Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
Approved by:	clement (mentor)
 2005-12-10 14:04:33 +00:00
Tim Bishop
ef117d6358 - Update to 2005.13.07 to make fetchable again 
PR:		89976
Submitted by:	Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
Approved by:	clement (mentor)
 2005-12-06 15:13:17 +00:00
Kris Kennaway
8295c21a0e BROKEN: Size mismatch 2005-11-16 04:37:44 +00:00
Sergey Matveychuk
88de31623a - Update to 2004.12.16 
PR:		ports/75205
Submitted by:	maintainer
 2004-12-18 15:14:42 +00:00
Sergey Matveychuk
5e2edc3f15 Not a real update with the last patch. 
The real update here.
 2004-12-11 03:58:19 +00:00
Sergey Matveychuk
fd116809ac - This update brings seaview to the latest release (dated 09.24.04 
in the FTP site).

- While here add a modeline for vi, and fix a tab (cosmetic)

- Make portlint happy.

PR:		ports/74897
Submitted by:	maintainer
 2004-12-11 03:49:29 +00:00