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Commit Graph

1692 Commits

Author SHA1 Message Date
Martin Wilke
bd48d39657 - Chase database/sqlite3 slib bump
Approved by:	portmgr (myself)
2014-06-27 17:21:06 +00:00
Martin Wilke
2a912e1c5e Fix compilation on 10+ (clang)
Fix format of WWW entry in pkg-descr

PR:		190798
2014-06-27 14:14:01 +00:00
Wen Heping
f47ad7b877 - Mark BROKEN
Approved by:	portmgr@(implicit)
2014-06-26 14:38:10 +00:00
Antoine Brodin
063f95149a Put HOME in MAKE_ARGS to handle pverride of HOME in MAKE_ENV from bsd.port.mk 2014-06-25 08:55:55 +00:00
Baptiste Daroussin
3078c82f53 Use MAKE_CMD instead of GMAKE
With hat:	portmgr
2014-06-24 22:02:32 +00:00
Baptiste Daroussin
7984527ad4 Mark as broken: no distinfo provided 2014-06-22 22:07:25 +00:00
Baptiste Daroussin
8fa661c2d9 Mark as broken: no distinfo provided
With hat:	portmgr
2014-06-22 22:06:01 +00:00
Raphael Kubo da Costa
26b977f43a Fix shebang line in Perl and Python scripts.
PR:		191146
Submitted by:	mzaki@m.u-tokyo.ac.jp (maintainer)
2014-06-20 12:54:29 +00:00
Antoine Brodin
6ae01531e3 Mark BROKEN: Fails to configure
===>  Configuring for p5-bioperl-run-1.6.1_4
Invalid prerequisite condition '0/processing XML data/Bio::Tools::Run::EMBOSSacd' for XML::Twig at /usr/local/lib/perl5/site_perl/5.16/Module/Build/Base.pm line 1702.
*** [do-configure] Error code 25

Reported by:	pkg-fallout
With hat:	portmgr
2014-06-19 21:31:16 +00:00
John Marino
af93a9e79e biology/blast: Deprecate for removal after 4 September 2014
This unstaged port will be removed for legal reasons.

PR:		190626
Submitted by:	Muhammad Rahman
Approved by:	portmgr (implicit)
2014-06-19 11:55:50 +00:00
Raphael Kubo da Costa
fa8c84c90c Update to 1.2.10.
PR:		191129
Submitted by:	mzaki@m.u-tokyo.ac.jp (maintainer)
2014-06-17 21:39:44 +00:00
Raphael Kubo da Costa
53828d5f20 Update to 3.8.31.
PR:		191130
Submitted by:	mzaki@m.u-tokyo.ac.jp (maintainer)
2014-06-17 21:36:06 +00:00
John Marino
d0bb05930a Reset the 99 ports still listed under sylvio@
Sylvio's last commit was 17 months ago, a full 5 months after all of his
ports could have been reset per policy.  Given the push to complete
staging (48 ports are still unstaged, something like 70+ have already
been staged by other committers) and given that PRs are automatically
assigned but never addressed, it's better just to reset all the ports and
PRs so that it's clear to others that these ports are free to maintain.

Approved by:	portmgr (implicit)
2014-06-11 18:55:29 +00:00
Mathieu Arnold
61de712f46 Remove all the bootstrap files (.bs) from the plists.
Starting with perl 5.20, they're not installed any more if empty,
and on FreeBSD, they're (always ?) empty.

PR:		190681
Submitted by:	mat
Exp-Run by:	antoine
Sponsored by:	Absolight
2014-06-10 12:14:12 +00:00
Jimmy Olgeni
37e782dfbc Remove indefinite articles and trailing periods from COMMENT, plus
minor COMMENT typos and surrounding whitespace fixes. Categories A-C.

CR:		D196
Approved by:	portmgr (bapt)
2014-06-09 11:21:52 +00:00
Jimmy Olgeni
55dc0f983a Remove all space characters from Makefile assignments.
No functional changes included.

CR:		D193 (except math/sedumi)
Approved by:	portmgr (bapt)
2014-06-08 19:51:27 +00:00
Vanilla I. Shu
6ba77a1bb9 Stagify, remove BROKEN. 2014-06-07 01:54:41 +00:00
Martin Wilke
031596f908 - Update to 6.6.0
- Stage support

PR:		190508
Submitted by:	Muhammad Moinur Rahman
2014-06-05 03:28:06 +00:00
Antoine Brodin
9f6d625880 Unbreak 2014-06-04 20:08:15 +00:00
Martin Wilke
015670c696 - Update to 4.5.2
- Pass maintainership to submitter

PR:		190564
2014-06-04 06:28:56 +00:00
Baptiste Daroussin
2afa67184c Update to 0.5.1 snapshot 20100824
For the story when moved to google code the project released a version 0.5 which was newer than the 0.5.1 from earlier hosting
To be consistent named it 0.5.1s20100824 (following what debian did)
Switch treeviewx to use unicode version of wx
Add a patch from Ubuntu to fix loading trees.
2014-06-03 14:51:29 +00:00
Olli Hauer
e1858b091a - add stage support
- adjust BSDn license
2014-06-01 11:42:17 +00:00
Olli Hauer
684d78ae77 - add stage support 2014-06-01 11:33:57 +00:00
Olli Hauer
f5e4f15bd6 - add stage support
- add OPTION for X11
- bump PORTREVISION
2014-06-01 11:26:39 +00:00
Olli Hauer
e3fe4137a9 - add stage support 2014-06-01 11:05:43 +00:00
Olli Hauer
c3fa596129 - add stage support 2014-06-01 10:54:33 +00:00
Olli Hauer
b2efa85d17 - add stage support 2014-06-01 10:37:22 +00:00
Danilo Egea Gondolfo
3a22921826 - I forgot to svn add a new patch 2014-05-31 18:03:08 +00:00
Danilo Egea Gondolfo
2e8ad31ad5 - Update from 1.13.5 to 1.13.7
- Add libtool to USES
- Take maintainership
2014-05-31 17:57:06 +00:00
Jonathan Chu
e4d4ffc175 Add DOCS and EXAMPLE options to biology/mafft
PR:		ports/190161
Submitted by:	"Reed A. Cartwright" <cartwright@asu.edu> (maintainer)
Approved by:	swills (maintainer)
2014-05-31 04:18:18 +00:00
Wen Heping
2699b52547 - Update to 1.6.923
- Add STAGE support

PR:		190342
Submitted by:	Muhammad Moinur Rahman <5u623l20@gmail.com>
2014-05-30 15:46:05 +00:00
John Marino
a7ff4d0e9c biology/embassy: specify post-extraction with ${TAR}
It's possible that EXTRACT_CMD won't be predefined in the near future
in order to support distfiles in multiple formats.  We know the post-
extraction tool needs to be tar, so let's specify it directly.

This port needs staging. It doesn't like like a quick job so I'm leaving
that to the listed maintainer.

Approved by:	infrastructure improvements blanket
Approved by:	portmgr (implicit) (to skip stage check)
2014-05-29 10:47:58 +00:00
Baptiste Daroussin
f0a8714b3a Convert to USES=dos2unix
With hat:	portmgr
2014-05-26 06:55:07 +00:00
Eitan Adler
eccf5db03a Multiple ports: reset maintainers
Maintainers for these ports have been notified on 5 separate occasions
	over the course of several months about pending actions required.

	We really appreciate the time and effort you put in to maintain
	these ports.

	If you are still interested in helping to maintain these ports just
	reply to me or file a PR and I will happily assign the port to you
	again.

Approved by:	portmgr (implicit)
2014-05-26 02:33:38 +00:00
Martin Wilke
03fe751588 - Update to 4.5.1
PR:		187975
Submitted by:	Ports Fury
2014-05-21 05:40:53 +00:00
Dmitry Marakasov
d68f2a384a - Update to 7.149
- Clarify LICENSE
- Stagify

PR:		189746
Submitted by:	"Reed A. Cartwright" <cartwright@asu.edu> (maintainer)
2014-05-20 19:35:30 +00:00
Tijl Coosemans
f191d6b887 Quote ${CC} and similar variables in MAKE_ARGS.
Reported by:	Dominic Fandrey <kamikaze@bsdforen.de>
2014-05-20 19:32:39 +00:00
Philippe Audeoud
650b73f707 - update to 1.31 2014-05-16 13:33:02 +00:00
Wen Heping
06e1e7ab8b - Update to 5.10.0 2014-05-13 07:04:17 +00:00
Wen Heping
f6d9105f6a - Update to 5.9.0 [1]
- Stage support [1]
- Add LICENSE [1]
- Reset maintainer to port@

PR:		188554 [1]
Submitted by:	Muhammad Moinur Rahman <5u623l20@gmail.com> [1]
2014-05-13 02:46:25 +00:00
Antoine Brodin
bba40a1244 Replace maintainer's email address with one that seems to work
With hat:	portmgr
2014-05-10 18:07:52 +00:00
Baptiste Daroussin
b67bcd423b Catch a couple of missing convertsion to :tu/:tl
Submitted by:	ak
With hat:	portmgr
2014-05-05 11:15:53 +00:00
Baptiste Daroussin
3093b237ba Support stage 2014-05-05 10:26:15 +00:00
Baptiste Daroussin
4a4ec28d37 Convert all :U to :tu and :L to :tl
Since FreeBSD 8.4 and FreeBSD 9.1 make(1) do support :tu and :tl as a
replacement for :U and :L (which has been marked as deprecated)

bmake which is the default on FreeBSD 10+ only support by default
:tu/:tl a hack has been added at the time to support :U and :L to ease
migration. This hack is now not necessary anymore

Note that this makes the ports tree incompatible with make(1) from
FreeBSD 8.3 or earlier

With hat:	portmgr
2014-05-05 09:45:36 +00:00
Kurt Jaeger
07685f17fd biology/seqtools: 4.25 -> 4.26, fix broken distinfo by upgrading
Submitted by:   pi (myself)
Approved by:    jadawin (mentor)
2014-05-02 19:00:04 +00:00
Wen Heping
504cac19e8 - Stage support [1]
- Pet portlint [1]
- Add LICENSE
- Convert to PYDISTUTILS_AUTOPLIST

PR:		188819 [1]
Submitted by:	Bartek Rutkowski <ports@robakdesign.com> [1]
2014-05-02 14:00:13 +00:00
Kurt Jaeger
4e90cff927 biology/seqtools: 4.24 -> 4.25
PR:             ports/186299
Submitted by:   pi (myself)
Approved by:    jadawin (mentor)
2014-05-01 16:50:34 +00:00
Steve Wills
4404ec6009 - Stage
- Drop easy_install
- Use auto pkg-plist
- Delete pkg-plist

PR:		ports/188818
Submitted by:	Bartek Rutkowski <ports@robakdesign.com>
Approved by:	portmgr@ (blanket)
2014-04-27 01:59:47 +00:00
Martin Wilke
1cf7eb5d50 - Update to version 1.13.5
PR:		188863
Submitted by:	ports fury
2014-04-26 02:35:37 +00:00
Thomas Zander
50fd87108f - Un-break fetch stage: the name scheme of the source tarballs has changed
- Add LICENSE*
- Remove conflict with hunspell:
  - Rename the 'analyze' binary to 'analyze_t'
  - put a note in pkg-message.in
- Pet portlint

PR:		ports/187569
Submitted by:	Tsurutani Naoki <turutani@scphys.kyoto-u.ac.jp>
Approved by:	thierry (mentor)
MFH:	2014Q2
2014-04-22 19:28:18 +00:00