Jason W. Bacon ad36c9cb17 biology/gemma: Upgrade to 0.98.3 ... Minor bug fixes and enhancements Reported by: portscout		2021-01-02 22:05:58 +00:00
..
abyss
artemis
avida	For ports on riscv64 that fail the same (or similar ways) to aarch64, mark	2021-01-02 01:46:08 +00:00
babel
bamtools
bcftools
bedtools
bioawk
biococoa
bolt-lmm
bowtie
bowtie2
bwa	For ports on riscv64 that fail the same (or similar ways) to aarch64, mark	2021-01-02 01:46:08 +00:00
canu
cd-hit
cdbfasta
checkm
clustal-omega
clustalw
cufflinks
cytoscape
ddocent
diamond
dsr-pdb
emboss
exonerate
fasta
fasta3
fastahack
fastdnaml
fastool
fastp
fastqc
fasttree
fastx-toolkit
figtree
fluctuate
freebayes	For ports on riscv64 that fail the same (or similar ways) to aarch64, mark	2021-01-02 01:46:08 +00:00
garlic
gatk
gcta
gemma	biology/gemma: Upgrade to 0.98.3	2021-01-02 22:05:58 +00:00
gff2ps
gmap
gperiodic
graphlan
grappa
groopm
hhsuite
hisat2
hmmer
htslib
hyphy
igv
infernal
iolib
iqtree
jalview
jellyfish
kallisto
lagan
lamarc
libbigwig
libgtextutils
libsbml
linux-foldingathome
mafft
mapm3
migrate
minimap2
molden
mopac
mothur
mrbayes
mummer
muscle
ncbi-blast+
ncbi-cxx-toolkit
ncbi-toolkit
ngs-sdk	For ports on riscv64 that fail the same (or similar ways) to aarch64, mark	2021-01-02 01:46:08 +00:00
p5-AcePerl
p5-Bio-ASN1-EntrezGene
p5-Bio-Cluster
p5-Bio-Coordinate
p5-Bio-Das
p5-Bio-Das-Lite
p5-Bio-DB-EMBL
p5-Bio-DB-NCBIHelper
p5-Bio-FeatureIO
p5-Bio-GFF3
p5-Bio-Glite
p5-Bio-Graphics
p5-Bio-MAGETAB
p5-Bio-NEXUS
p5-Bio-Phylo
p5-Bio-SCF
p5-Bio-Variation
p5-BioPerl
p5-BioPerl-Run
p5-transdecoder
p5-TrimGalore
paml
pbbam
pbseqan
pear-merger	For ports on riscv64 that fail the same (or similar ways) to aarch64, mark	2021-01-02 01:46:08 +00:00
phrap
phred
phylip
phyml
picard-tools
plink
pooler
primer3
prodigal
prodigy-lig
protomol
psi88
py-biom-format
py-biopython
py-bx-python	Drop python 2.7 support from a few ports	2020-12-28 23:02:12 +00:00
py-cutadapt
py-dnaio
py-ete3
py-fastTSNE
py-Genesis-PyAPI	Drop python 2.7 support from a few ports	2020-12-28 23:02:12 +00:00
py-gffutils
py-gtfparse	Drop python 2.7 support from a few ports	2020-12-28 23:02:12 +00:00
py-hits
py-loompy
py-macs2
py-multiqc
py-orange3-bioinformatics
py-orange3-single-cell
py-pandas-charm	Drop python 2.7 support from a few ports	2020-12-28 23:02:12 +00:00
py-pyfaidx	Drop python 2.7 support from a few ports	2020-12-28 23:02:12 +00:00
py-pysam	Drop python 2.7 support from a few ports	2020-12-28 23:02:12 +00:00
py-scikit-bio
py-xenaPython	Drop python 2.7 support from a few ports	2020-12-28 23:02:12 +00:00
pyfasta	Drop python 2.7 support from a few ports	2020-12-28 23:02:12 +00:00
python-nexus	Drop python 2.7 support from a few ports	2020-12-28 23:02:12 +00:00
rainbow
recombine
ruby-bio
rubygem-bio
rubygem-bio-executables
rubygem-bio-old-biofetch-emulator
rubygem-bio-shell
samtools
scrm
seaview
seqan
seqan1
seqan-apps
seqio
seqtk
sim4
slclust
smithwaterman
stacks
star
stringtie
subread
tabixpp
treekin
treepuzzle
trimadap
trimmomatic
tRNAscan-SE
ugene	- Update Unipro UGENE port to version 37.0	2020-12-31 13:43:09 +00:00
vcflib	For ports on riscv64 that fail the same (or similar ways) to aarch64, mark	2021-01-02 01:46:08 +00:00
vcftools
velvet
viennarna
vsearch
vt
wise
Makefile