Yuri Victorovich 95cd93086e biology/treekin: Unbreak ... Recent Lapack API changes broke it. PR: 259179 (cherry picked from commit c16b145a0f)		2021-11-06 18:34:50 -07:00
..
abyss	cleanup: drop support for EOL FreeBSD 11.X	2021-09-30 23:23:30 +02:00
ad2vcf
artemis
avida
babel
bamtools
bbmap
bcftools
bedtools
bfc
bioawk
biococoa
biolibc	biology/biolibc: Update to 0.2.0.11	2021-09-17 11:33:57 -05:00
biolibc-tools
bioparser	biology/bioparser: Update 3.0.12-2 -> 3.0.15	2021-09-21 09:41:49 -07:00
biosig
biosoup
biostar-tools	biology/biostar-tools: Add biology/kallisto run depend to metaport	2021-09-27 07:14:45 -05:00
bolt-lmm
bowtie
bowtie2
bwa
canu
cd-hit
cdbfasta
checkm
clustal-omega
clustalw
cufflinks
cytoscape
ddocent	cleanup: drop support for EOL FreeBSD 11.X	2021-09-30 23:23:30 +02:00
diamond
dsr-pdb
edlib
emboss	biology/emboss: Add "emboss" command in ${LOCALBASE}/bin	2021-09-24 16:34:20 -05:00
erminej
exonerate
fasta
fasta3
fastahack
fastdnaml
fastool
fastp
fastqc
fasttree
fastx-toolkit
figtree
flash
fluctuate
freebayes
garlic
gatk
gcta
gemma
generand
gff2ps
gmap
gperiodic
graphlan
groopm
haplohseq
hhsuite	biology/hhsuite: Fix build on aarch64	2021-09-13 17:47:57 +02:00
hisat2
hmmer
htslib
hyphy
igv	cleanup: drop support for EOL FreeBSD 11.X	2021-09-30 23:23:30 +02:00
infernal
iolib
iqtree
jalview	cleanup: drop support for EOL FreeBSD 11.X	2021-09-30 23:23:30 +02:00
jellyfish	biology/jellyfish: Switch to static tarball and update license info	2021-09-17 15:01:35 -03:00
kallisto
lamarc
libbigwig
libgtextutils
libnuml	biology/libnuml: New port: C++ library for Numerical Markup Language	2021-09-18 23:47:02 -07:00
libsbml
libsedml	biology/libsedml: New port: C++ SED-ML library	2021-09-19 11:15:35 -07:00
linux-foldingathome
mafft
mapm3
migrate
minimap2
mmseqs2	biology/mmseqs2: disable on 32-bits	2021-09-12 21:05:53 +00:00
molden
mopac
mothur
mrbayes
mummer
muscle
ncbi-blast+
ncbi-cxx-toolkit	biology/ncbi-cxx-toolkit: Update 25.0.0 -> 25.2.0	2021-10-01 00:14:37 -07:00
ncbi-entrez-direct
ncbi-toolkit
ncbi-vdb
ngs-sdk
p5-AcePerl
p5-Bio-ASN1-EntrezGene
p5-Bio-Cluster
p5-Bio-Coordinate
p5-Bio-Das
p5-Bio-Das-Lite
p5-Bio-DB-EMBL
p5-Bio-DB-NCBIHelper
p5-Bio-FeatureIO
p5-Bio-GFF3
p5-Bio-Glite
p5-Bio-Graphics
p5-Bio-MAGETAB
p5-Bio-NEXUS
p5-Bio-Phylo
p5-Bio-SCF
p5-Bio-Variation
p5-BioPerl
p5-BioPerl-Run
p5-transdecoder
p5-TrimGalore
paml
pbbam
pbseqan
peak-classifier
pear-merger
phrap
phred
phyml
picard-tools
plink
pooler
primer3
prodigal
prodigy-lig
protomol
psi88
py-bigwig
py-biom-format
py-biopython
py-bx-python
py-crossmap
py-cutadapt
py-dnaio
py-ete3
py-Genesis-PyAPI
py-gffutils
py-goatools
py-gtfparse
py-hits
py-libnuml	biology/py-libnuml: Fix typo	2021-09-19 11:15:35 -07:00
py-libsedml	biology/py-libsedml: New port: SED-ML library for Python	2021-09-19 11:15:36 -07:00
py-loompy
py-macs2
py-multiqc
py-ont-fast5-api
py-orange3-bioinformatics
py-orange3-single-cell
py-pandas-charm
py-pyfaidx
py-pysam
py-PySCeS	biology/py-PySCeS: Update 0.9.8a -> 1.0.0	2021-09-20 14:34:22 -07:00
py-python-libsbml
py-pywgsim
py-resdk
py-scikit-bio
py-xenaPython
pyfasta
python-nexus
rainbow
rampler
readseq
recombine
ruby-bio
rubygem-bio
rubygem-bio-executables
rubygem-bio-old-biofetch-emulator
rubygem-bio-shell
sam2pairwise
samtools
scrm
seaview
seqan
seqan1
seqan3
seqan-apps
seqio
seqkit	biology/seqkit: Update 0.16.1 -> 2.0.1	2021-09-18 10:48:26 -07:00
seqtk
sigviewer
sim4
slclust
smithwaterman
snpeff
spoa
sra-tools
stacks
star
stringtie
subread
tabixpp
taxonkit
treekin	biology/treekin: Unbreak	2021-11-06 18:34:50 -07:00
treepuzzle
trimadap
trimmomatic
tRNAscan-SE
ucsc-userapps	biology/ucsc-userapps: Add "kent" command in ${PREFIX}/bin	2021-09-24 16:53:30 -05:00
ugene	biology/ugene: update Unipro UGENE to version 40.0.	2021-09-16 09:48:26 +00:00
unikmer	biology/unikmer: Update 0.18.4 -> 0.18.8	2021-09-26 01:54:07 -07:00
vcf2hap
vcf-split
vcflib
vcftools	biology/vcftools: Add CPE information	2021-09-25 20:28:38 +00:00
velvet
viennarna
vsearch
vt
wise
Makefile	*/Makefile: Sort SUBDIRs	2021-09-21 11:35:06 +08:00