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mirror of https://git.FreeBSD.org/ports.git synced 2025-01-05 06:27:37 +00:00
freebsd-ports/science/gromacs/pkg-plist
Wen Heping 1c5d99661f - Update to 5.0.2
PR:		193902
Submitted by:	tkato432@yahoo.com
2014-10-30 12:19:02 +00:00

998 lines
37 KiB
Plaintext

bin/GMXRC
bin/GMXRC.bash
bin/GMXRC.csh
bin/GMXRC.zsh
bin/demux.pl
bin/do_dssp%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/editconf%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/eneconv%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_anadock%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_anaeig%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_analyze%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_angle%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_bar%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_bond%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_bundle%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_chi%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_cluster%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_clustsize%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_confrms%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_covar%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_current%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_density%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_densmap%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_densorder%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_dielectric%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_dipoles%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_disre%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_dist%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_dos%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_dyecoupl%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_dyndom%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_enemat%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_energy%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_filter%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_gyrate%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_h2order%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_hbond%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_helix%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_helixorient%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_hydorder%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_lie%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_mdmat%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_mindist%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_morph%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_msd%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_nmeig%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_nmens%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_nmtraj%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_options%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_order%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_pme_error%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_polystat%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_potential%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_principal%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_protonate%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_rama%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_rdf%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_rms%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_rmsdist%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_rmsf%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_rotacf%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_rotmat%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_saltbr%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_sans%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_sas%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_saxs%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_select%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_sgangle%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_sham%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_sigeps%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_sorient%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_spatial%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_spol%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_tcaf%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_traj%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_tune_pme%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_vanhove%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_velacc%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_wham%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_wheel%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/g_x2top%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/genbox%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/genconf%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/genion%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/genrestr%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/gmx%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/gmx-completion-gmx%%SUFFIX_MPI%%%%SUFFIX_D%%.bash
bin/gmx-completion.bash
bin/gmxcheck%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/gmxdump%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/grompp%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/make_edi%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/make_ndx%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/mdrun%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/mk_angndx%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/pdb2gmx%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/tpbconv%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/trjcat%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/trjconv%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/trjorder%%SUFFIX_MPI%%%%SUFFIX_D%%
bin/xplor2gmx.pl
bin/xpm2ps%%SUFFIX_MPI%%%%SUFFIX_D%%
include/gromacs/analysisdata.h
include/gromacs/analysisdata/abstractdata.h
include/gromacs/analysisdata/analysisdata.h
include/gromacs/analysisdata/arraydata.h
include/gromacs/analysisdata/dataframe.h
include/gromacs/analysisdata/datamodule.h
include/gromacs/analysisdata/modules/average.h
include/gromacs/analysisdata/modules/displacement.h
include/gromacs/analysisdata/modules/histogram.h
include/gromacs/analysisdata/modules/lifetime.h
include/gromacs/analysisdata/modules/plot.h
include/gromacs/commandline.h
include/gromacs/commandline/cmdlinehelpwriter.h
include/gromacs/commandline/cmdlineinit.h
include/gromacs/commandline/cmdlinemodule.h
include/gromacs/commandline/cmdlineparser.h
include/gromacs/commandline/cmdlineprogramcontext.h
include/gromacs/commandline/pargs.h
include/gromacs/fft/fft.h
include/gromacs/fileio/confio.h
include/gromacs/fileio/enxio.h
include/gromacs/fileio/filenm.h
include/gromacs/fileio/futil.h
include/gromacs/fileio/gmxfio.h
include/gromacs/fileio/matio.h
include/gromacs/fileio/mdoutf.h
include/gromacs/fileio/pdbio.h
include/gromacs/fileio/tpxio.h
include/gromacs/fileio/trajectory_writing.h
include/gromacs/fileio/trnio.h
include/gromacs/fileio/trx.h
include/gromacs/fileio/trxio.h
include/gromacs/fileio/xdr_datatype.h
include/gromacs/fileio/xtcio.h
include/gromacs/gmxana/gstat.h
include/gromacs/legacyheaders/atomprop.h
include/gromacs/legacyheaders/bondf.h
include/gromacs/legacyheaders/calcgrid.h
include/gromacs/legacyheaders/calch.h
include/gromacs/legacyheaders/calcmu.h
include/gromacs/legacyheaders/chargegroup.h
include/gromacs/legacyheaders/checkpoint.h
include/gromacs/legacyheaders/constr.h
include/gromacs/legacyheaders/copyrite.h
include/gromacs/legacyheaders/coulomb.h
include/gromacs/legacyheaders/disre.h
include/gromacs/legacyheaders/domdec.h
include/gromacs/legacyheaders/domdec_network.h
include/gromacs/legacyheaders/ebin.h
include/gromacs/legacyheaders/force.h
include/gromacs/legacyheaders/genborn.h
include/gromacs/legacyheaders/gmx_cpuid.h
include/gromacs/legacyheaders/gmx_detect_hardware.h
include/gromacs/legacyheaders/gmx_fatal.h
include/gromacs/legacyheaders/gmx_fatal_collective.h
include/gromacs/legacyheaders/gmx_omp_nthreads.h
include/gromacs/legacyheaders/gmx_thread_affinity.h
include/gromacs/legacyheaders/index.h
include/gromacs/legacyheaders/inputrec.h
include/gromacs/legacyheaders/invblock.h
include/gromacs/legacyheaders/macros.h
include/gromacs/legacyheaders/main.h
include/gromacs/legacyheaders/md_logging.h
include/gromacs/legacyheaders/md_support.h
include/gromacs/legacyheaders/mdatoms.h
include/gromacs/legacyheaders/mdebin.h
include/gromacs/legacyheaders/mdrun.h
include/gromacs/legacyheaders/mshift.h
include/gromacs/legacyheaders/mtop_util.h
include/gromacs/legacyheaders/mvdata.h
include/gromacs/legacyheaders/names.h
include/gromacs/legacyheaders/network.h
include/gromacs/legacyheaders/nonbonded.h
include/gromacs/legacyheaders/nrnb.h
include/gromacs/legacyheaders/ns.h
include/gromacs/legacyheaders/nsgrid.h
include/gromacs/legacyheaders/oenv.h
include/gromacs/legacyheaders/orires.h
include/gromacs/legacyheaders/pbc.h
include/gromacs/legacyheaders/perf_est.h
include/gromacs/legacyheaders/physics.h
include/gromacs/legacyheaders/pme.h
include/gromacs/legacyheaders/princ.h
include/gromacs/legacyheaders/qmmm.h
include/gromacs/legacyheaders/rbin.h
include/gromacs/legacyheaders/readinp.h
include/gromacs/legacyheaders/rmpbc.h
include/gromacs/legacyheaders/sfactor.h
include/gromacs/legacyheaders/shellfc.h
include/gromacs/legacyheaders/shift.h
include/gromacs/legacyheaders/sighandler.h
include/gromacs/legacyheaders/sim_util.h
include/gromacs/legacyheaders/splitter.h
include/gromacs/legacyheaders/symtab.h
include/gromacs/legacyheaders/sysstuff.h
include/gromacs/legacyheaders/tables.h
include/gromacs/legacyheaders/tgroup.h
include/gromacs/legacyheaders/txtdump.h
include/gromacs/legacyheaders/typedefs.h
include/gromacs/legacyheaders/types/atoms.h
include/gromacs/legacyheaders/types/block.h
include/gromacs/legacyheaders/types/constr.h
include/gromacs/legacyheaders/types/energy.h
include/gromacs/legacyheaders/types/enums.h
include/gromacs/legacyheaders/types/fcdata.h
include/gromacs/legacyheaders/types/force_flags.h
include/gromacs/legacyheaders/types/forcerec.h
include/gromacs/legacyheaders/types/genborn.h
include/gromacs/legacyheaders/types/globsig.h
include/gromacs/legacyheaders/types/graph.h
include/gromacs/legacyheaders/types/group.h
include/gromacs/legacyheaders/types/hw_info.h
include/gromacs/legacyheaders/types/idef.h
include/gromacs/legacyheaders/types/ifunc.h
include/gromacs/legacyheaders/types/inputrec.h
include/gromacs/legacyheaders/types/interaction_const.h
include/gromacs/legacyheaders/types/ishift.h
include/gromacs/legacyheaders/types/iteratedconstraints.h
include/gromacs/legacyheaders/types/matrix.h
include/gromacs/legacyheaders/types/mdatom.h
include/gromacs/legacyheaders/types/membedt.h
include/gromacs/legacyheaders/types/nb_verlet.h
include/gromacs/legacyheaders/types/nblist.h
include/gromacs/legacyheaders/types/nbnxn_cuda_types_ext.h
include/gromacs/legacyheaders/types/nbnxn_pairlist.h
include/gromacs/legacyheaders/types/nlistheuristics.h
include/gromacs/legacyheaders/types/nrnb.h
include/gromacs/legacyheaders/types/ns.h
include/gromacs/legacyheaders/types/nsgrid.h
include/gromacs/legacyheaders/types/oenv.h
include/gromacs/legacyheaders/types/pbc.h
include/gromacs/legacyheaders/types/qmmmrec.h
include/gromacs/legacyheaders/types/shellfc.h
include/gromacs/legacyheaders/types/simple.h
include/gromacs/legacyheaders/types/state.h
include/gromacs/legacyheaders/types/symtab.h
include/gromacs/legacyheaders/types/topology.h
include/gromacs/legacyheaders/update.h
include/gromacs/legacyheaders/vcm.h
include/gromacs/legacyheaders/vec.h
include/gromacs/legacyheaders/viewit.h
include/gromacs/legacyheaders/vsite.h
include/gromacs/legacyheaders/warninp.h
include/gromacs/legacyheaders/xvgr.h
include/gromacs/linearalgebra/eigensolver.h
include/gromacs/linearalgebra/matrix.h
include/gromacs/linearalgebra/mtxio.h
include/gromacs/linearalgebra/sparsematrix.h
include/gromacs/math/3dview.h
include/gromacs/math/do_fit.h
include/gromacs/math/gmxcomplex.h
include/gromacs/math/utilities.h
include/gromacs/onlinehelp.h
include/gromacs/onlinehelp/helptopicinterface.h
include/gromacs/options.h
include/gromacs/options/abstractoption.h
include/gromacs/options/basicoptions.h
include/gromacs/options/filenameoption.h
include/gromacs/options/optionfiletype.h
include/gromacs/options/optionflags.h
include/gromacs/options/options.h
include/gromacs/options/timeunitmanager.h
include/gromacs/selection.h
include/gromacs/selection/indexutil.h
include/gromacs/selection/nbsearch.h
include/gromacs/selection/position.h
include/gromacs/selection/selection.h
include/gromacs/selection/selectioncollection.h
include/gromacs/selection/selectionenums.h
include/gromacs/selection/selectionoption.h
include/gromacs/selection/selectionoptionmanager.h
include/gromacs/swap/enums.h
include/gromacs/timing/walltime_accounting.h
include/gromacs/trajectoryanalysis.h
include/gromacs/trajectoryanalysis/analysismodule.h
include/gromacs/trajectoryanalysis/analysissettings.h
include/gromacs/trajectoryanalysis/cmdlinerunner.h
include/gromacs/utility.h
include/gromacs/utility/arrayref.h
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include/gromacs/utility/cstringutil.h
include/gromacs/utility/errorcodes.h
include/gromacs/utility/exceptions.h
include/gromacs/utility/file.h
include/gromacs/utility/flags.h
include/gromacs/utility/gmx_header_config.h
include/gromacs/utility/gmx_header_config_gen.h
include/gromacs/utility/gmxassert.h
include/gromacs/utility/init.h
include/gromacs/utility/programcontext.h
include/gromacs/utility/smalloc.h
include/gromacs/utility/stringutil.h
include/gromacs/utility/uniqueptr.h
include/gromacs/version.h
lib/libgromacs%%SUFFIX_MPI%%%%SUFFIX_D%%.so
lib/libgromacs%%SUFFIX_MPI%%%%SUFFIX_D%%.so.0
lib/libgromacs%%SUFFIX_MPI%%%%SUFFIX_D%%.so.0.0.0
libdata/pkgconfig/libgromacs%%SUFFIX_MPI%%%%SUFFIX_D%%.pc
man/man1/gmx-anadock.1.gz
man/man1/gmx-anaeig.1.gz
man/man1/gmx-analyze.1.gz
man/man1/gmx-angle.1.gz
man/man1/gmx-bar.1.gz
man/man1/gmx-bundle.1.gz
man/man1/gmx-check.1.gz
man/man1/gmx-chi.1.gz
man/man1/gmx-cluster.1.gz
man/man1/gmx-clustsize.1.gz
man/man1/gmx-confrms.1.gz
man/man1/gmx-convert-tpr.1.gz
man/man1/gmx-covar.1.gz
man/man1/gmx-current.1.gz
man/man1/gmx-density.1.gz
man/man1/gmx-densmap.1.gz
man/man1/gmx-densorder.1.gz
man/man1/gmx-dielectric.1.gz
man/man1/gmx-dipoles.1.gz
man/man1/gmx-disre.1.gz
man/man1/gmx-distance.1.gz
man/man1/gmx-do_dssp.1.gz
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man/man1/gmx-dyecoupl.1.gz
man/man1/gmx-dyndom.1.gz
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man/man1/gmx-eneconv.1.gz
man/man1/gmx-enemat.1.gz
man/man1/gmx-energy.1.gz
man/man1/gmx-filter.1.gz
man/man1/gmx-freevolume.1.gz
man/man1/gmx-gangle.1.gz
man/man1/gmx-genconf.1.gz
man/man1/gmx-genion.1.gz
man/man1/gmx-genrestr.1.gz
man/man1/gmx-grompp.1.gz
man/man1/gmx-gyrate.1.gz
man/man1/gmx-h2order.1.gz
man/man1/gmx-hbond.1.gz
man/man1/gmx-helix.1.gz
man/man1/gmx-helixorient.1.gz
man/man1/gmx-help.1.gz
man/man1/gmx-hydorder.1.gz
man/man1/gmx-insert-molecules.1.gz
man/man1/gmx-lie.1.gz
man/man1/gmx-make_edi.1.gz
man/man1/gmx-make_ndx.1.gz
man/man1/gmx-mdmat.1.gz
man/man1/gmx-mdrun.1.gz
man/man1/gmx-mindist.1.gz
man/man1/gmx-mk_angndx.1.gz
man/man1/gmx-morph.1.gz
man/man1/gmx-msd.1.gz
man/man1/gmx-nmeig.1.gz
man/man1/gmx-nmens.1.gz
man/man1/gmx-nmtraj.1.gz
man/man1/gmx-order.1.gz
man/man1/gmx-pdb2gmx.1.gz
man/man1/gmx-pme_error.1.gz
man/man1/gmx-polystat.1.gz
man/man1/gmx-potential.1.gz
man/man1/gmx-principal.1.gz
man/man1/gmx-protonate.1.gz
man/man1/gmx-rama.1.gz
man/man1/gmx-rdf.1.gz
man/man1/gmx-rms.1.gz
man/man1/gmx-rmsdist.1.gz
man/man1/gmx-rmsf.1.gz
man/man1/gmx-rotacf.1.gz
man/man1/gmx-rotmat.1.gz
man/man1/gmx-saltbr.1.gz
man/man1/gmx-sans.1.gz
man/man1/gmx-sasa.1.gz
man/man1/gmx-saxs.1.gz
man/man1/gmx-select.1.gz
man/man1/gmx-sham.1.gz
man/man1/gmx-sigeps.1.gz
man/man1/gmx-solvate.1.gz
man/man1/gmx-sorient.1.gz
man/man1/gmx-spatial.1.gz
man/man1/gmx-spol.1.gz
man/man1/gmx-tcaf.1.gz
man/man1/gmx-traj.1.gz
man/man1/gmx-trjcat.1.gz
man/man1/gmx-trjconv.1.gz
man/man1/gmx-trjorder.1.gz
man/man1/gmx-tune_pme.1.gz
man/man1/gmx-vanhove.1.gz
man/man1/gmx-velacc.1.gz
man/man1/gmx-view.1.gz
man/man1/gmx-wham.1.gz
man/man1/gmx-wheel.1.gz
man/man1/gmx-x2top.1.gz
man/man1/gmx-xpm2ps.1.gz
man/man7/gromacs.7.gz
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