Mathieu Arnold 2884d5aa32 Fixup USE_GITHUB usage. ... It already sets DISTNAME to a very nice unique name, do not set it yourself. Sponsored by: Absolight		2016-11-26 10:09:54 +00:00
..
ariadne	Cleanup $() variables in ports Makefiles.	2016-07-20 15:33:20 +00:00
artemis	${RM} already has -f.	2016-10-21 12:51:40 +00:00
avida	biology/avida: Fix ncurses from ports support	2016-11-19 14:56:46 +00:00
babel
bcftools	biology/{htslib|samtools|bcftools}: 1.3 -> 1.3.1	2016-05-26 20:28:55 +00:00
bedtools	biology/bedtools is not jobs safe	2016-08-22 04:32:18 +00:00
biococoa
biojava	- Mark it BROKEN	2016-10-28 01:49:40 +00:00
blat	biology/blat: Fix build with non-base SSL	2016-09-30 19:40:13 +00:00
bowtie	Bump PORTREVISIONS for ports depending on the canonical version of GCC and	2016-11-20 09:38:08 +00:00
bowtie2	biology/bowtie2: 2.2.7 -> 2.2.8	2016-05-13 20:12:44 +00:00
bwa	Attempt to fix build on non-x86 archs.	2016-11-11 09:07:21 +00:00
cd-hit	Bump PORTREVISIONS for ports depending on the canonical version of GCC and	2016-11-20 09:38:08 +00:00
cdbfasta
chemeq
clustalw	Remove useless WRKSRC definitions.	2016-05-25 15:43:34 +00:00
consed	- Replace Mk/bsd.linux-apps.mk and Mk/bsd.linux-rpm.mk with	2016-09-05 19:23:42 +00:00
crux
diamond	biology/diamond: Update to version 0.8.26	2016-11-06 05:42:32 +00:00
emboss	- update libgd to 2.2.2	2016-07-20 09:33:31 +00:00
fasta	${RM} already has -f.	2016-10-21 12:51:40 +00:00
fasta3	- Fix trailing whitespace in pkg-messages	2016-05-19 11:09:14 +00:00
fastdnaml
fastool
fasttree	Bump PORTREVISIONS for ports depending on the canonical version of GCC and	2016-11-20 09:38:08 +00:00
fastx-toolkit
fluctuate
garlic
gff2ps
gmap	The 64-bit arm arch is actually spelled 'aarch64', not 'arm64'.	2016-11-08 19:29:56 +00:00
gperiodic	- LICENSE	2016-07-02 09:05:22 +00:00
grappa	- Fix trailing whitespace in pkg-descrs, categories [a-f]*	2016-05-19 10:21:23 +00:00
hmmer
htslib	Use USES=pathfix where applicable.	2016-10-21 15:21:13 +00:00
iolib	- Update to 1.14.8	2016-05-01 01:03:48 +00:00
jalview	- Fix trailing whitespace in pkg-descrs, categories [a-f]*	2016-05-19 10:21:23 +00:00
jellyfish	Mark various leaf ports broken on aarch64, and, where appropriate, other	2016-11-11 09:31:02 +00:00
lagan	- Fix trailing whitespace in pkg-messages	2016-05-19 11:09:14 +00:00
lamarc	- Switch to options helpers	2016-08-18 09:31:58 +00:00
libgtextutils	Use USES=pathfix where applicable.	2016-10-21 15:21:13 +00:00
libsbml	Cleanup no longer needed CHMOD usage after r424898.	2016-11-02 22:45:14 +00:00
linux-foldingathome	- Replace Mk/bsd.linux-apps.mk and Mk/bsd.linux-rpm.mk with	2016-09-05 19:23:42 +00:00
mafft	- Fix trailing whitespace in pkg-descrs, categories [a-f]*	2016-05-19 10:21:23 +00:00
mapm3	- Fix trailing whitespace in pkg-descrs, categories [a-f]*	2016-05-19 10:21:23 +00:00
migrate	- Switch to options helpers	2016-04-17 10:15:59 +00:00
molden	biology/molden: add missing LICENSE_NAME	2016-11-10 05:13:02 +00:00
mopac
mrbayes
mummer
muscle	Mark various leaf ports broken on aarch64, and, where appropriate, other	2016-11-11 09:31:02 +00:00
ncbi-blast+	Bump PORTREVISIONS for ports depending on the canonical version of GCC and	2016-11-20 09:38:08 +00:00
ncbi-toolkit	Cleanup no longer needed CHMOD usage after r424898.	2016-11-02 22:45:14 +00:00
njplot	biology/njplot: Revive and update to version 2.4	2016-11-16 14:52:53 +00:00
p5-AcePerl	Mark various leaf ports broken on aarch64, and, where appropriate, other	2016-11-11 09:31:02 +00:00
p5-Bio-ASN1-EntrezGene	- Update to 1.72	2016-09-11 05:26:01 +00:00
p5-Bio-Das
p5-Bio-Das-Lite
p5-Bio-GFF3
p5-Bio-Glite
p5-Bio-Graphics
p5-Bio-MAGETAB
p5-Bio-NEXUS	- Fix trailing whitespace in pkg-descrs, categories [a-f]*	2016-05-19 10:21:23 +00:00
p5-Bio-Phylo	- Fix trailing whitespace in pkg-descrs, categories [a-f]*	2016-05-19 10:21:23 +00:00
p5-Bio-SCF
p5-bioperl	- Remove unnecessary USES=shebangfix	2016-11-20 23:56:14 +00:00
p5-bioperl-run
p5-transdecoder
paml	Cleanup no longer needed CHMOD usage after r424898.	2016-11-02 22:45:14 +00:00
phrap
phred
phylip
phyml
plink
plinkseq	Mark various leaf ports broken on aarch64, and, where appropriate, other	2016-11-11 09:31:02 +00:00
primer3
protomol
psi88	- Fix trailing whitespace in pkg-descrs, categories [a-f]*	2016-05-19 10:21:23 +00:00
py-biom-format	Update email address to jrm@FreeBSD.org for ports that I maintain	2016-09-23 21:42:02 +00:00
py-biopython	- Update to 1.68	2016-09-23 01:54:45 +00:00
pycogent	- Update to 1.9 [1]	2016-08-08 11:21:04 +00:00
pyfasta	- Fix trailing whitespace in pkg-descrs, categories [a-f]*	2016-05-19 10:21:23 +00:00
python-nexus	- Update to 1.35	2016-06-08 07:39:05 +00:00
recombine	When there is a do-install target, do not use a post-install target, do	2016-07-19 11:04:13 +00:00
ruby-bio
samtools	biology/{htslib|samtools|bcftools}: 1.3 -> 1.3.1	2016-05-26 20:28:55 +00:00
seaview	biology/seaview: Update version 4.5.4.8=>4.6	2016-06-10 11:06:42 +00:00
seqan	- Update biology/seqan and bilogy/seqan-apps to version 2.2.0 [1]	2016-09-14 19:38:58 +00:00
seqan1	When there is a do-install target, do not use a post-install target, do	2016-07-19 11:04:13 +00:00
seqan-apps	Replace USE_GCC=4.9+ by USE_GCC=yes, now that lang/gcc and the default	2016-11-25 21:27:37 +00:00
seqio
seqtools	biology/seqtools: update 4.43.0 -> 4.44.1	2016-11-11 06:19:10 +00:00
sim4
slclust	Remove unneeded usage of:	2016-06-06 15:25:42 +00:00
ssaha	Bump PORTREVISIONS for ports depending on the canonical version of GCC and	2016-11-20 09:38:08 +00:00
t_coffee
tinker	Cleanup no longer needed CHMOD usage after r424898.	2016-11-02 22:45:14 +00:00
treepuzzle
treeviewx	GOOGLE_CODE has gone away.	2016-09-14 15:59:34 +00:00
trimmomatic
tRNAscan-SE	Prevent collision with getline(3)	2016-05-13 18:38:34 +00:00
ugene	The 64-bit arm arch is actually spelled 'aarch64', not 'arm64'.	2016-11-08 19:29:56 +00:00
vcftools	Fixup USE_GITHUB usage.	2016-11-26 10:09:54 +00:00
velvet
wise	- Switch to options helpers	2016-06-21 09:05:06 +00:00
xmolwt	- Fix trailing whitespace in pkg-descrs, categories [a-f]*	2016-05-19 10:21:23 +00:00
Makefile	biology/njplot: Revive and update to version 2.4	2016-11-16 14:52:53 +00:00