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mirror of https://git.FreeBSD.org/ports.git synced 2024-12-12 03:00:28 +00:00
freebsd-ports/biology
2010-09-08 00:16:45 +00:00
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adun LICENSE GPLv2 2010-06-05 19:53:32 +00:00
ariadne
artemis Bump portrevision due to upgrade of devel/gettext. 2008-06-06 13:08:29 +00:00
avida - Update to 2.10.0 2010-08-21 00:28:49 +00:00
babel Mark various ports as broken or ignore on powerpc. 2010-04-01 05:16:19 +00:00
belvu - Release distfile was renamed. 2007-03-08 13:17:26 +00:00
biococoa LICENSE LGPL21 2010-06-05 06:14:28 +00:00
biojava - Update to 1.7 2009-05-01 09:33:42 +00:00
blast - SUB_FILES += pkg-message 2010-01-09 23:51:26 +00:00
blat - Remove USE_GCC where it can be satisfied with base compiler on following 2008-07-25 14:34:52 +00:00
boinc-simap - Update the libmap instructions for amd64/8 2010-07-29 08:30:24 +00:00
chemeq Migration from bison 1.x to 2.x 2007-10-17 10:13:01 +00:00
clustalw - Fix fetch error 2009-12-27 03:05:03 +00:00
consed Welcome to the new linux ports infrastructure which allows using 2009-03-19 17:28:51 +00:00
crimap - actually remove old patch 2010-01-17 00:16:34 +00:00
crux Update to Crux 1.2.0. 2009-09-19 17:58:13 +00:00
distribfold - Remove unreachable OSVERSION code. 2007-04-16 11:57:17 +00:00
dna-qc BROKEN should not be quoted. 2010-06-13 08:40:06 +00:00
dotter - Removed BROKEN because file fetches and checksums correctly 2010-04-28 22:37:11 +00:00
embassy - Update to 6.2.0 2010-04-07 01:21:36 +00:00
emboss - Update to 6.2.0 2010-04-07 01:21:36 +00:00
fasta Mark various ports as broken or ignore on powerpc. 2010-04-01 05:16:19 +00:00
fasta3 Update to 35.4.9 2009-08-23 15:47:37 +00:00
fastdnaml
finchtv
fluctuate For ports maintained by ports@FreeBSD.org, remove names and/or 2009-12-21 02:19:12 +00:00
garlic - Remove unneeded dependency from gtk12/gtk20 [1] 2008-04-19 17:56:05 +00:00
genpak - update to 1.4.1 2010-03-28 06:47:48 +00:00
gff2ps Bump portrevision due to upgrade of devel/gettext. 2008-06-06 13:08:29 +00:00
gmap Update CONFIGURE_ARGS for how we pass CONFIGURE_TARGET to configure script. 2008-08-21 06:18:49 +00:00
gperiodic Bounce PORTREVISION for gettext-related ports. Have fun, ya'll. 2010-05-31 02:01:56 +00:00
grappa
hmmer - Update download locations, update WWW 2009-02-01 08:17:14 +00:00
iolib Fix typo in maintainer mail address 2010-08-02 16:06:38 +00:00
jalview Bump portrevision due to upgrade of devel/gettext. 2008-06-06 13:08:29 +00:00
kinemage - Remove unneeded dependency from gtk12/gtk20 [1] 2008-04-19 17:56:05 +00:00
L-Breeder - update to 1.4.1 2010-03-28 06:47:48 +00:00
lagan - Remove duplicates from MAKE_ENV after inclusion of CC and CXX in default MAKE_ENV 2008-07-25 09:08:42 +00:00
lamarc - Update to 2.1.5 2010-08-04 06:30:07 +00:00
libgenome -Repocopy devel/libtool15 -> libtool22 and libltdl15 -> libltdl22. 2009-08-02 19:36:34 +00:00
libsbml - Update to 4.0.1 2010-05-24 07:19:35 +00:00
linux-foldingathome - Fix typo in WWW 2007-10-04 07:28:40 +00:00
lsysexp - update to 1.4.1 2010-03-28 06:47:48 +00:00
mafft - Update download locations, update WWW 2009-02-04 03:31:00 +00:00
mapm3 - Mark MAKE_JOBS_UNSAFE 2009-11-20 22:53:09 +00:00
migrate - Update MAINTAINER to submitters new mail address 2010-09-04 15:32:58 +00:00
molden Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now 2009-09-13 00:08:01 +00:00
mopac - Update to 7.1.11 2009-12-22 11:25:15 +00:00
mrbayes Fix LIB_DEPENDS on devel/readline: its sh lib version was bumped recently from 2009-05-12 11:28:17 +00:00
mummer - Update to 3.22 2010-03-21 17:18:20 +00:00
muscle - Update maintainer's email address 2008-05-17 16:52:34 +00:00
ncbi-toolkit - use $SUB_FILES to dynamically adjust pkg-message 2010-01-31 03:42:20 +00:00
njplot Convert most of remaining ports that depend on xorg-libraries to 2009-06-09 15:33:28 +00:00
ortep3 For ports maintained by ports@FreeBSD.org, remove names and/or 2009-12-21 02:19:12 +00:00
p5-AcePerl - Remove unneeded dependencies which is in perl-5.8.9 dist 2010-01-29 14:52:21 +00:00
p5-Bio-ASN1-EntrezGene - Take advantage of CPAN macro from bsd.sites.mk, change ${MASTER_SITE_PERL_CPAN} to CPAN. 2008-04-17 14:30:31 +00:00
p5-Bio-Das - Update to 1.17 2010-06-30 07:36:25 +00:00
p5-Bio-Das-Lite - Update to 2.04 2010-06-22 03:28:49 +00:00
p5-Bio-Glite - Remove unneeded dependencies which is in perl-5.8.9 dist 2010-01-29 14:52:21 +00:00
p5-Bio-Graphics - Update to 2.11 2010-06-30 07:41:06 +00:00
p5-Bio-MAGETAB - Update to 1.13 2010-09-07 07:00:17 +00:00
p5-Bio-NEXUS - Update to 0.75 2010-09-07 07:15:24 +00:00
p5-Bio-Phylo - update to 1.4.1 2010-03-28 06:47:48 +00:00
p5-Bio-SCF - Update to 1.03 2010-01-09 01:21:21 +00:00
p5-bioperl - update to 1.4.1 2010-03-28 06:47:48 +00:00
p5-bioperl-run - update to 1.4.1 2010-03-28 06:47:48 +00:00
paml - Update to 4.4c 2010-09-08 00:16:45 +00:00
phd2fasta Teach the building cluster that these ports are not to be build 2008-05-25 23:05:10 +00:00
phrap Teach the building cluster that these ports are not to be build 2008-05-25 23:05:10 +00:00
phred Teach the building cluster that these ports are not to be build 2008-05-25 23:05:10 +00:00
phylip For ports maintained by ports@FreeBSD.org, remove names and/or 2009-12-21 02:19:12 +00:00
phyml PhyML is a software that estimates maximum likelihood phylogenies from 2009-07-21 01:10:13 +00:00
platon Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now 2009-09-13 00:08:01 +00:00
povchem - update to 1.4.1 2010-03-28 06:47:48 +00:00
primer3 - Update to 1.1.4 2009-12-18 02:55:57 +00:00
protomol - update to 1.4.1 2010-03-28 06:47:48 +00:00
psi88 Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now 2009-09-13 00:08:01 +00:00
py-biopython - Update to 1.54 2010-07-02 02:57:19 +00:00
pycogent - Update to 1.4.1 2010-06-01 06:57:30 +00:00
pyfasta - Update USE_PYTHON in Makefile to reflect upstream Python 2010-08-18 14:09:34 +00:00
pymol - update to 1.4.1 2010-03-28 06:47:48 +00:00
python-nexus - Update to 0.7 2010-02-24 01:30:46 +00:00
rasmol Convert most of remaining ports that depend on xorg-libraries to 2009-06-09 15:33:28 +00:00
recombine For ports maintained by ports@FreeBSD.org, remove names and/or 2009-12-21 02:19:12 +00:00
ruby-bio - Update to 1.4.0 2010-06-08 00:18:54 +00:00
seaview - update to 1.4.1 2010-03-28 06:47:48 +00:00
seqio For ports maintained by ports@FreeBSD.org, remove names and/or 2009-12-21 02:19:12 +00:00
sim4
ssaha - Fix plist files installation. 2008-06-21 02:46:21 +00:00
t_coffee - Respect PORTDOCS/PORTEXAMPLES 2008-09-09 13:43:15 +00:00
tinker Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now 2009-09-13 00:08:01 +00:00
treepuzzle Update CONFIGURE_ARGS for how we pass CONFIGURE_TARGET to configure script. 2008-08-21 06:18:49 +00:00
treeviewx - update to 1.4.1 2010-03-28 06:47:48 +00:00
tRNAscan-SE - Update MASTER_SITES and WWW: line 2008-05-22 00:49:42 +00:00
velvet Velvet is a de novo genomic assembler specially designed for short read 2009-11-07 01:23:59 +00:00
wise - SBU_FILES += pkg-message 2010-01-08 01:30:20 +00:00
xdrawchem - update to 1.4.1 2010-03-28 06:47:48 +00:00
xmolwt Bump portrevision due to upgrade of devel/gettext. 2008-06-06 13:08:29 +00:00
Makefile p5-Bio-Das-Lite is an implementation of a client for the DAS protocol (XML 2010-03-01 09:16:25 +00:00