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freebsd-ports/science
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Piotr Kubaj 3c4b28b056 science/svmlight: fix build on 13.0+ 
cc -O2 -pipe  -fPIC -fstack-protector-strong -fno-strict-aliasing  svm_learn_main.o svm_learn.o svm_common.o svm_hideo.o -o svm_learn -L. -lm
ld: error: duplicate symbol: verbosity
>>> defined at svm_common.c
>>>            svm_common.o:(verbosity)
>>> defined at svm_hideo.c
>>>            svm_hideo.o:(.bss+0x38)
cc: error: linker command failed with exit code 1 (use -v to see invocation)
2021-10-29 18:01:10 +00:00
..
2d-rewriter Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
abinit science/abinit: Remove PY_PYGMENTS 2021-06-21 00:16:17 +08:00
afni */*: Remove redundant '-[0-9]*' from CONFLICTS 2021-10-29 11:50:18 +02:00
agrum science/agrum: Update 0.22.0 -> 0.22.1 2021-09-13 15:28:57 -07:00
aircraft-datcom One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
ALPSCore One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
antioch math/gsl: update to 2.7 2021-06-16 21:31:27 +02:00
apbs One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
ascent science/ascent: New port: Visualization and analysis runtime for multi-physics HPC simulations 2021-09-16 09:46:15 -07:00
atompaw One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
avogadro2 graphics/mesa-libs: Bump reverse deps for libglvnd 2021-06-22 11:53:08 -07:00
avogadrolibs science/[,py-]spglib: Update 1.16.1 -> 1.16.2 2021-08-15 18:32:15 -07:00
axom science/axom: Add dependencies 2021-09-18 12:37:10 -07:00
bagel One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
bddsolve Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
berkeleygw One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
bodr Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
buddy Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
cantera science/cantera: Fix handling of Python versions 2021-09-19 20:08:25 -07:00
cdcl Deorbit RESTRICTED && NO_CDROM, part two. 2021-05-06 13:47:48 +02:00
cdf Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
cdk One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
cdo Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
cgnslib graphics/mesa-libs: Bump reverse deps for libglvnd 2021-06-22 11:53:08 -07:00
cgribex science/cgribex: Simplify Makefile 2021-05-12 05:47:00 +08:00
checkmol games/hedgewars: lang/nbc: science/checkmol: science/mol2ps: bump PORTREVISION 2021-07-31 21:03:46 -05:00
chemical-mime-data INSTALLS_ICONS: retire the macro and rework the related dependencies 2021-10-10 21:44:42 +02:00
chemps2 One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
chemtool Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
chemtool-devel Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
chrono devel/flatbuffers: Update 1.12.0 -> 2.0.0 2021-05-11 12:49:07 -07:00
clhep Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
clipper One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
code_saturne science/code_saturne: upgrade to 7.0.2 2021-10-18 22:17:32 +02:00
colt Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
conduit science/conduit: Add dependencies 2021-09-16 12:48:34 -07:00
coordgenlibs science/coordgenlibs: Update 2.0.3 -> 3.0.0 2021-09-09 13:00:09 -07:00
cp2k One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
cp2k-data One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
crf++ Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
csvtk science/csvtk: Cross-platform and ultrafast toolkit for CSV/TSV processing 2021-06-18 16:28:21 -05:00
dakota science/dakota: fix build on non-x86 2021-10-22 11:42:25 +00:00
dalton Regenerate all distfiles using gitlab as source. 2021-04-09 20:44:23 +02:00
dcl Deorbit RESTRICTED && NO_CDROM, part two. 2021-05-06 13:47:48 +02:00
devisor all: Remove all other $FreeBSD keywords. 2021-04-06 16:31:13 +02:00
dftbplus science/dftbplus: fix BROKEN message 2021-05-25 11:06:44 +00:00
dkh One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
dlib-cpp science/dlib-cpp: remove the patch that is now committed upstream and breaks the build on powerpc64le 2021-04-11 22:45:40 +00:00
drawxtl graphics/mesa-libs: Bump reverse deps for libglvnd 2021-06-22 11:53:08 -07:00
dvc Unbreak ports after devel/py-gitpython's PORTNAME change 2021-04-29 13:53:44 -04:00
dynare science/dynare: fix build on non-amd64 64-bit architectures 2021-10-08 01:25:19 +00:00
eccodes science/eccodes: Update to 2.23.0 2021-09-22 06:23:22 +08:00
elk science/elk: Update 7.1.14 -> 7.2.42 2021-06-14 11:26:02 -07:00
elmerfem graphics/mesa-libs: Bump reverse deps for libglvnd 2021-06-22 11:53:08 -07:00
epte *: Return culot@'s ports to the pool (and perl@) after safekeeping his bit. 2021-09-06 23:13:27 +02:00
erd One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
ergo One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
erkale math/armadillo: Update to 10.6.2 2021-09-21 10:25:15 +01:00
erkale-pseudopotentials One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
fastcap Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
fasthenry Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
fastjet One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
fisicalab math/gsl: update to 2.7 2021-06-16 21:31:27 +02:00
frontistr science/frontistr adding FrontISTR 2021-04-26 12:17:38 +02:00
fsom One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
fvcom Deorbit RESTRICTED && NO_CDROM, part two. 2021-05-06 13:47:48 +02:00
fvcom-mpi *: Clean up some things 2021-10-12 17:01:38 +02:00
gabedit INSTALLS_ICONS: retire the macro and rework the related dependencies 2021-10-10 21:44:42 +02:00
gamess-us One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
gchemutils INSTALLS_ICONS: retire the macro and rework the related dependencies 2021-10-10 21:44:42 +02:00
gdma One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
getdp science/getdp: Update to 3.4.0. 2021-09-24 12:35:11 -05:00
ghemical graphics/mesa-libs: Bump reverse deps for libglvnd 2021-06-22 11:53:08 -07:00
ghmm Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
gnudatalanguage science/gnudatalanguage: upgrade to v1.0.1 2021-10-20 20:19:14 +02:00
gpaw-setups One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
gramps INSTALLS_ICONS: retire the macro and rework the related dependencies 2021-10-10 21:44:42 +02:00
grib_api Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
gromacs science/gromacs: Update 2021.2 -> 2021.3 2021-08-19 11:04:44 -07:00
gsmc Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
gtamsanalyzer Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
h5utils Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
h5z-zfp One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
harminv Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
hdf science/hdf: add back the previously removed powerpc workaround 2021-06-16 22:33:27 +00:00
hdf5 science/hdf5: Add CPE information 2021-10-14 12:26:24 +02:00
hdf5-18 science/hdf5-18: Add CPE information 2021-10-14 12:26:39 +02:00
healpix One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
helfem math/armadillo: Update to 10.6.2 2021-09-21 10:25:15 +01:00
hepmc3 science/hepmc3: Update 3.2.3 -> 3.2.4 2021-07-09 10:01:32 -07:00
highfive science/highfive: Update 2.3 -> 2.3.1 2021-08-05 13:10:25 -07:00
hypre science/hypre: Update 2.22.1 -> 2.23.0 2021-10-07 11:43:15 -07:00
iboview graphics/mesa-libs: Bump reverse deps for libglvnd 2021-06-22 11:53:08 -07:00
InsightToolkit */*: Fix ENOTIME: return my ports to the pool 2021-05-22 10:13:01 +08:00
isaac-cfd Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
jdftx math/gsl: update to 2.7 2021-06-16 21:31:27 +02:00
jmol science/jmol: Update 14.31.53 -> 14.31.57 2021-10-06 09:11:50 -07:00
jstrack Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
kalzium KDE: Update KDE Gear to 21.08.2 2021-10-07 22:48:21 +02:00
kim-api many: Depend on vim instead of vim-console 2021-09-02 12:09:29 -06:00
kst2 math/gsl: update to 2.7 2021-06-16 21:31:27 +02:00
lammps science/lammps: Update patch_2Jul2021 -> stable_29Sep2021 2021-09-30 10:30:10 -07:00
lamprop One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
latte One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
libaec science/libaec: Update to 1.0.6 2021-09-28 03:48:08 +08:00
libccp4 One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
libcint science/libcint: Update 4.4.4 -> 4.4.6 2021-10-16 15:21:14 -07:00
libctl Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
libecpint science/libecpint: 1.0.5 -> 1.0.6 2021-04-16 21:00:55 -07:00
libefp One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
libgeodecomp Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
libghemical science/libghemical: Remove LD_PRELOAD vecause it configured now without it 2021-09-26 10:43:55 -07:00
libgridxc science/libgridxc: Update 0.8.5 -> 0.9.6 2021-04-23 18:36:22 -07:00
libint Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
libint2 Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
libkml devel/googletest: update to 1.11.0 2021-06-12 03:25:45 +00:00
liblinear Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
libmsym One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
liboglappth *: fix tab vs. space issues, and comments according to the guide. 2021-10-16 11:51:39 +02:00
libquantum Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
libssm One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
libsvm *: Clean up some things 2021-10-12 17:01:38 +02:00
libsvm-python Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
libvdwxc Regenerate all distfiles using gitlab as source. 2021-04-09 20:44:23 +02:00
libxc Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
liggghts One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
luscus graphics/mesa-libs: Bump reverse deps for libglvnd 2021-06-22 11:53:08 -07:00
madness One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
maeparser One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
massxpert Regenerate all distfiles using gitlab as source. 2021-04-09 20:44:23 +02:00
mbdyn math/suitesparse: adapt dependency lines after modularization 2021-05-25 12:00:10 +02:00
mcstas One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
mcstas-comps Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
mcxtrace One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
mcxtrace-comps One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
mdynamix One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
medit graphics/mesa-libs: Bump reverse deps for libglvnd 2021-06-22 11:53:08 -07:00
metaphysicl science/metaphysicl: Update 0.6.0 -> 1.2.2 2021-10-28 19:34:17 -07:00
minc2 */*: Remove redundant '-[0-9]*' from CONFLICTS 2021-10-29 11:50:18 +02:00
mmdb2 One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
mmtf-cpp One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
mol2ps games/hedgewars: lang/nbc: science/checkmol: science/mol2ps: bump PORTREVISION 2021-07-31 21:03:46 -05:00
molgif One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
molscript graphics/mesa-libs: Bump reverse deps for libglvnd 2021-06-22 11:53:08 -07:00
molsketch science/molsketch: Update 0.7.1 -> 0.7.2 2021-04-07 11:47:02 -07:00
mpb Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
mpqc Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
msms Style: improve ONLY_FOR_ARCHS_REASON (grammar, markup, etc.) 2021-10-25 12:58:29 +00:00
multiwfn One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
namd Style: improve ONLY_FOR_ARCHS_REASON (grammar, markup, etc.) 2021-10-25 12:58:29 +00:00
nest science/nest: Update 2.20.1 -> 3.1 2021-10-20 23:23:16 -07:00
netcdf Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
netcdf-cxx Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
netcdf-fortran Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
nifticlib */*: Remove redundant '-[0-9]*' from CONFLICTS 2021-10-29 11:50:18 +02:00
nwchem science/nwchem: Add the PYTHON option enabling python syntax in .nw files 2021-10-19 17:24:53 -07:00
nwchem-data One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
octopus science/[,py-]spglib: Update 1.16.1 -> 1.16.2 2021-08-15 18:32:15 -07:00
openbabel science/coordgenlibs: Update 2.0.3 -> 3.0.0 2021-09-09 13:00:09 -07:00
openems science/openems: fix build on powerpc64* 2021-10-01 14:39:19 +00:00
openkim One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
openkim-models many: Depend on vim instead of vim-console 2021-09-02 12:09:29 -06:00
openmc science/openmc: Unbreak LIBMESH option by switching to mpich 2021-10-12 13:52:17 -07:00
openmx science/openmx: Cleanup - remove unnecessary lines 2021-09-05 10:00:44 -07:00
opensim-core graphics/mesa-libs: Bump reverse deps for libglvnd 2021-06-22 11:53:08 -07:00
opensph devel/onetbb: Update to 2021.4.0 2021-10-10 17:11:27 +02:00
opsin One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
orthanc devel/icu: update to 70.1 2021-10-28 16:37:30 +00:00
orthanc-dicomweb devel/icu: update to 70.1 2021-10-28 16:37:30 +00:00
orthanc-mysql science/orthanc-mysql: Update to 4.3 2021-10-15 10:48:25 +01:00
orthanc-postgresql science/orthanc-postgresql: Revive port 2021-08-07 17:40:42 -04:00
orthanc-webviewer devel/icu: update to 70.1 2021-10-28 16:37:30 +00:00
p5-Algorithm-SVMLight Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
p5-Chemistry-3DBuilder Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
p5-Chemistry-Bond-Find Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
p5-Chemistry-Canonicalize Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
p5-Chemistry-Elements Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
p5-Chemistry-File-MDLMol Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
p5-Chemistry-File-Mopac Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
p5-Chemistry-File-PDB Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
p5-Chemistry-File-SLN Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
p5-Chemistry-File-SMARTS Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
p5-Chemistry-File-SMILES Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
p5-Chemistry-File-VRML Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
p5-Chemistry-File-XYZ Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
p5-Chemistry-FormulaPattern Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
p5-Chemistry-InternalCoords Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
p5-Chemistry-Isotope Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
p5-Chemistry-MacroMol Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
p5-Chemistry-MidasPattern Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
p5-Chemistry-Mok Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
p5-Chemistry-Mol science/p5-Chemistry-Mol: Sort PLIST 2021-07-15 00:10:34 +08:00
p5-Chemistry-Pattern Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
p5-Chemistry-Reaction Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
p5-Chemistry-Ring Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
p5-Geo-BUFR Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
p5-Geo-Coordinates-Converter Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
p5-Geo-Coordinates-Converter-iArea Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
p5-Geo-WebService-Elevation-USGS science/p5-Geo-WebService-Elevation-USGS: Update to 0.119 2021-05-31 03:55:16 +08:00
p5-Mcstas-Tools One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
p5-PerlMol Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
p5-Physics-Unit *: Return culot@'s ports to the pool (and perl@) after safekeeping his bit. 2021-09-06 23:13:27 +02:00
packmol One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
pagmo2 devel/onetbb: Update to 2021.4.0 2021-10-10 17:11:27 +02:00
paje Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
pcmsolver One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
PETSc Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
phonopy science/phonopy: New port: Package for phonon calculations at harmonic and quasi-harmonic levels 2021-08-05 09:51:48 -07:00
plumed many: Depend on vim instead of vim-console 2021-09-02 12:09:29 -06:00
pnetcdf Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
pulseview INSTALLS_ICONS: retire the macro and rework the related dependencies 2021-10-10 21:44:42 +02:00
py-abipy One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
py-access Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
py-asdf science/py-asdf: Update to 2.8.1 2021-06-15 01:40:23 +08:00
py-ase science/py-ase: Update 3.21.1 -> 3.22.0 2021-06-28 01:08:47 -07:00
py-avogadrolibs science/py-avogadrolibs: Update 1.93.0 -> 1.94.0 2021-06-04 10:56:40 -07:00
py-cdo science/py-cdo: Update to 1.5.5 2021-07-25 04:21:58 +08:00
py-chainer devel/protobuf: Update to 3.17.3 2021-07-22 02:11:52 +08:00
py-chainer-chemistry One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
py-chempy science/py-chempy: Update 0.8.1 -> 0.8.2 2021-09-21 10:47:02 -07:00
py-cirq-aqt science/py-cirq-*: Update to 0.12.0 2021-08-12 01:57:37 -07:00
py-cirq-core science/py-cirq-*: Update to 0.12.0 2021-08-12 01:57:37 -07:00
py-cirq-google science/py-cirq-google: Update 0.12.0 -> 0.13.0 2021-10-17 08:49:41 -07:00
py-cirq-ionq science/py-cirq-*: Update to 0.12.0 2021-08-12 01:57:37 -07:00
py-cirq-pasqal science/py-cirq-pasqal: Update 0.12.0 -> 0.13.0 2021-10-22 01:57:02 -07:00
py-coards science/py-coards: Cosmetic change 2021-05-12 05:47:18 +08:00
py-DendroPy Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
py-dipy science/py-dipy: Update 1.4.0 -> 1.4.1 2021-05-06 10:59:23 -07:00
py-dlib science/py-dlib: fix build on powerpc64le 2021-04-11 17:08:35 +00:00
py-eccodes science/py-eccodes: Fix build with py-numpy-1.20.3 2021-10-26 08:59:49 +08:00
py-esda science/py-esda: Add SHAPE option 2021-09-21 11:44:54 +08:00
py-geolinks Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
py-geomet Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
py-geometer science/py-geometer: Fix build with py-numpy-1.20.3 2021-10-26 09:00:41 +08:00
py-geometric One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
py-gpaw science/py-gpaw: Update 21.1.0 -> 21.6.0 2021-08-08 18:57:37 -07:00
py-GPy science/py-GPy: Update 1.9.9 -> 1.10.0 2021-05-22 01:33:34 -07:00
py-GPyOpt One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
py-gsd science/py-gsd: Update 2.4.2 -> 2.5.0 2021-10-14 13:08:01 -07:00
py-h5json science/py-h5py: Update to 3.2.1 2021-04-18 13:44:04 +08:00
py-h5py science/py-h5py: Update to 3.5.0 2021-10-26 05:46:46 +08:00
py-hiphive science/py-hiphive: New port: High-order force constants for the masses 2021-08-05 09:51:46 -07:00
py-inequality Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
py-jupyter_jsmol science/py-jupyter_jsmol: Remove PY_PYGMENTS 2021-06-21 00:16:17 +08:00
py-kim-query One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
py-kinematics science/py-kinematics: Remove PYNUMPY 2021-04-18 13:44:05 +08:00
py-kliff science/py-kliff: Update 0.2.2 -> 0.3.0 2021-08-04 15:43:00 -07:00
py-liac-arff Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
py-libpysal science/py-libpysal: Update to 4.5.1 2021-07-06 22:57:09 +08:00
py-lifelines One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
py-MDAnalysis math/py-matplotlib: chase minimum Python version in dependent ports 2021-05-10 22:13:20 +02:00
py-MDAnalysisTests One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
py-mdp Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
py-mmtf-python One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
py-molmod One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
py-moltemplate science/py-moltemplate: Update 2.19.11 -> 2.19.12 2021-08-05 15:16:23 -07:00
py-netCDF4 science/py-netCDF4: Update version 1.3.1=>1.5.7 2021-10-10 10:32:52 -05:00
py-netcdf-flattener Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
py-nibabel One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
py-nilearn science/py-nilearn: Update 0.8.0 -> 0.8.1 2021-09-18 10:48:28 -07:00
py-obspy math/py-matplotlib: chase minimum Python version in dependent ports 2021-05-10 22:13:20 +02:00
py-oddt One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
py-OpenFermion science/py-OpenFermion: Update 1.1.0 -> 1.2.0 2021-10-22 01:57:02 -07:00
py-OpenMC science/py-OpenMC: New port: Monte Carlo neutron and photon transport simulation code (Python) 2021-10-11 08:51:36 -07:00
py-openpiv One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
py-paida Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
py-paramz One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
py-phono3py science/py-phono3py: Remove unnecessary build dependency on math/lapacke 2021-06-08 20:32:22 -07:00
py-phonopy science/py-phonopy: Update 2.10.0 -> 2.11.0 2021-08-05 09:51:47 -07:00
py-PubChemPy science/py-PubChemPy: New port: Simple Python wrapper around the PubChem PUG REST API 2021-07-27 06:16:51 -07:00
py-pupynere science/py-pupynere: Remove PYNUMPY 2021-04-18 13:44:05 +08:00
py-pyaixi Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
py-pyberny science/py-pyberny: New port: Optimizer of molecular geometries with respect to the total energy 2021-10-16 16:56:19 -07:00
py-pycsw science/py-pycsw: Update to 2.6.1 2021-10-25 23:57:35 +08:00
py-pydicom science/py-pydicom: Update to 2.2.2 2021-10-12 14:58:13 +08:00
py-PyFR science/py-PyFR: Update 1.12.1 -> 1.12.2 2021-07-27 12:19:04 -07:00
py-pygeodesy science/py-pygeodesy: Update to 21.9.16 2021-09-22 06:23:38 +08:00
py-pygeometa science/py-pygeometa: Update to 0.8.0 2021-09-21 11:44:55 +08:00
py-pygmo2 science/py-pygmo2: Update 2.16.1 -> 2.18.0 2021-08-05 09:51:47 -07:00
py-pyked science/py-pyked: New port: Package for manipulating Chemical Kinetics Experimental Data files 2021-09-11 00:13:16 -07:00
py-pymatgen science/py-pymatgen: Update 2022.0.14 -> 2022.0.15 2021-10-22 08:58:25 -07:00
py-pymol graphics/mesa-libs: Bump reverse deps for libglvnd 2021-06-22 11:53:08 -07:00
py-PyNE science/py-PyNE: Add the moab dependency; Install the nuc_data.h5 file; Build in parallel 2021-10-10 11:49:56 -07:00
py-pyosf One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
py-pysal science/py-pysal: Update to 2.5.0 2021-09-19 14:00:21 +08:00
py-pyscf science/py-pyscf: New port: Python module for quantum chemistry 2021-06-05 13:01:38 -07:00
py-pyteomics science/py-pyteomics: Update to 4.5 2021-09-22 06:23:38 +08:00
py-qcelemental science/py-qcelemental: Update 0.22.0 -> 0.23.0; Add test target 2021-10-16 16:56:18 -07:00
py-qcengine science/py-qcengine: Update 0.19.0 -> 0.20.1; Add test target 2021-10-16 16:56:19 -07:00
py-qspin One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
py-quantities science/py-quantities: Update 0.12.4 -> 0.12.5 2021-08-17 12:10:45 -07:00
py-rmf *: apply refactor.remove-consecutive-empty-lines 2021-10-19 10:36:47 +02:00
py-rmsd One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
py-ruffus One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
py-scikit-fuzzy Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
py-scikit-learn Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
py-scikit-optimize science/py-scikit-optimize: Update to 0.9.0 2021-10-25 23:57:36 +08:00
py-scikit-sparse science/py-scikit-sparse: Update 0.4.5 -> 0.4.6 2021-09-13 15:28:57 -07:00
py-scimath Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
py-scipy science/py-scipy: Add CPE information 2021-08-31 09:23:26 +00:00
py-scoria One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
py-segregation science/py-segregation: Update to 2.1.0 2021-09-21 11:44:55 +08:00
py-segyio science/py-segyio: Fix tests 2021-08-16 00:06:30 -07:00
py-SimpleSpectral One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
py-skrebate science/py-skrebate: Add py-skrebate 0.62 2021-04-26 04:35:07 +08:00
py-spaghetti science/py-spaghetti: Update to 1.6.4 2021-09-27 23:56:01 +08:00
py-spglib science/[,py-]spglib: Update 1.16.1 -> 1.16.2 2021-08-15 18:32:15 -07:00
py-tensorflow devel/icu: update to 70.1 2021-10-28 16:37:30 +00:00
py-tobler science/py-tobler: Update to 0.8.2 2021-07-06 22:57:14 +08:00
py-veusz Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
pybrain Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
pynn Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
qbox science/qbox: 1.73.2 -> 1.73.3 2021-08-20 22:56:24 -07:00
qcl Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
qiskit-aer devel/libfmt: Update to 8.0.0 2021-07-22 02:11:51 +08:00
qmcpack science/qmcpack: Update 3.10.0 -> 3.11.0 2021-04-18 23:39:23 -07:00
quantum-espresso One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
quantum-espresso-pseudopotentials One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
qwalk One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
R-cran-AMORE Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
R-cran-bayesm Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
R-cran-cmprsk Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
R-cran-DCluster Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
R-cran-e1071 science/R-cran-e1071: Update to 1.7-9 2021-09-18 13:18:14 +00:00
R-cran-eco Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
R-cran-Epi Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
R-cran-epicalc Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
R-cran-etm Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
R-cran-FAdist Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
R-cran-fastICA science/R-cran-fastICA: Update to 1.2-3 2021-09-25 18:13:13 -04:00
R-cran-kernlab Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
R-cran-snow science/R-cran-snow: Update to 0.4-4 2021-10-28 10:20:03 +00:00
R-cran-som Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
R-cran-udunits2 Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
rdkit science/coordgenlibs: Update 2.0.3 -> 3.0.0 2021-09-09 13:00:09 -07:00
rmf science/rmf: Update 1.2 -> 1.3 2021-04-22 01:05:44 -07:00
rubygem-ai4r Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
rubygem-cdo Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
rubygem-rgeo science/rubygem-rgeo: Update to 2.3.0 2021-04-26 04:36:21 +08:00
rubygem-rgeo-geojson Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
rubygem-rgeo-proj4 science/rubygem-rgeo-proj4: Update to 3.1.0 2021-10-14 03:17:26 +08:00
rubygem-rgeo-shapefile Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
rubygem-ruby-dcl Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
rubygem-ruby-netcdf Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
scidavis graphics/mesa-libs: Bump reverse deps for libglvnd 2021-06-22 11:53:08 -07:00
segyio science/segyio: Update 1.9.6 -> 1.9.7 2021-08-15 13:34:50 -07:00
shelxle science/shelxle: Update 1.0.1330 -> 1.0.1332 2021-10-20 17:46:02 -07:00
siconos cleanup: drop support for EOL FreeBSD 11.X 2021-09-30 23:23:30 +02:00
siesta science/siesta: Broken on aarch64, powerpc* due to lack of IEEE754 support in gcc 2021-05-18 21:07:41 -07:00
sigrok-cli INSTALLS_ICONS: retire the macro and rework the related dependencies 2021-10-10 21:44:42 +02:00
sigrok-firmware Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
sigrok-firmware-fx2lafw Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
sigrok-firmware-utils Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
silo Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
simbody graphics/mesa-libs: Bump reverse deps for libglvnd 2021-06-22 11:53:08 -07:00
simgrid science/simgrid: Update 3.27 -> 3.28 2021-08-16 00:06:31 -07:00
simint One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
simlib Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
simsmith all: Remove all other $FreeBSD keywords. 2021-04-06 16:31:13 +02:00
smoldyn science/smoldyn: Update 2.65 -> 2.66 2021-06-20 10:58:51 -07:00
sparta science/sparta: Update 26Feb2021 -> 20Oct2021 2021-10-20 23:23:15 -07:00
spglib science/[,py-]spglib: Update 1.16.1 -> 1.16.2 2021-08-15 18:32:15 -07:00
step KDE: Update KDE Gear to 21.08.2 2021-10-07 22:48:21 +02:00
svmlight science/svmlight: fix build on 13.0+ 2021-10-29 18:01:10 +00:00
szip Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
teem One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
tfel Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
tfel-edf Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
thermofun science/thermofun: Update 0.3.7 -> 0.3.8 2021-06-28 15:46:19 -07:00
tinker science/tinker: Update 8.9.5 -> 8.10.1 2021-10-11 08:51:36 -07:00
udunits Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
v_sim INSTALLS_ICONS: retire the macro and rework the related dependencies 2021-10-10 21:44:42 +02:00
vipster graphics/mesa-libs: Bump reverse deps for libglvnd 2021-06-22 11:53:08 -07:00
vmd graphics/mesa-libs: Bump reverse deps for libglvnd 2021-06-22 11:53:08 -07:00
voro++ One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
votca science/votca: Update 2021.2 -> 2021.2-18560 2021-09-28 17:49:03 -07:00
wannier90 One more small cleanup, forgotten yesterday. 2021-04-07 10:09:01 +02:00
wwplot math/py-matplotlib: chase minimum Python version in dependent ports 2021-05-10 22:13:20 +02:00
wxmacmolplt graphics/mesa-libs: Bump reverse deps for libglvnd 2021-06-22 11:53:08 -07:00
xcfun science/xcfun: fix build on GCC-based systems 2021-06-07 06:38:43 -05:00
xcrysden graphics/mesa-libs: Bump reverse deps for libglvnd 2021-06-22 11:53:08 -07:00
xdrawchem graphics/mesa-libs: Bump reverse deps for libglvnd 2021-06-22 11:53:08 -07:00
xtb Remove # $FreeBSD$ from Makefiles. 2021-04-06 16:31:07 +02:00
yoda science/yoda: Update 1.9.0 -> 1.9.1 2021-09-12 10:27:25 -07:00
Makefile */Makefile: Sort SUBDIRs 2021-10-25 23:57:04 +08:00