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1562af855b
freebsd-ports/biology
History
Martin Wilke 24815166c6 - Fix build on -current 
- Update MASTER_SITES and WWW: line
- Support CXX/CXXFLAGS properly
- Support PLIST_FILES
- Stage support

PR:		184852
Submitted by:	Ports Fury
2014-01-25 16:48:05 +00:00
..
ariadne
artemis Support stage 2014-01-20 23:06:48 +00:00
avida
babel Support stage 2014-01-15 22:44:13 +00:00
biococoa
biojava Convert biology to MDOCS and MEXAMPLES 2014-01-03 15:46:52 +00:00
blast Convert biology to MDOCS and MEXAMPLES 2014-01-03 15:46:52 +00:00
blat
boinc-simap The hmmer binary was renamed upstream to indicate that it is now an 2013-12-29 10:41:50 +00:00
chemeq Stage support 2014-01-18 15:55:42 +00:00
clustalw
consed Convert biology to MDOCS and MEXAMPLES 2014-01-03 15:46:52 +00:00
crux Fix properties on pkg-plist 2014-01-21 23:18:05 +00:00
embassy Reduce over inclusion of bsd.port.mk 2014-01-15 22:48:32 +00:00
emboss
fasta Reduce over inclusion of bsd.port.mk 2014-01-15 22:50:18 +00:00
fasta3 Mark as broken: Invalid checksum, seems like the software was rerolled 2014-01-03 19:46:05 +00:00
fastdnaml
finchtv Convert biology to MDOCS and MEXAMPLES 2014-01-03 15:46:52 +00:00
fluctuate
garlic
genpak
gff2ps
gmap
gperiodic
grappa
hmmer Stage support 2013-12-30 18:08:14 +00:00
iolib Support stage 2014-01-20 17:02:11 +00:00
jalview Fix properties on pkg-plist 2014-01-21 23:18:05 +00:00
lagan
lamarc - rename AL2 to APACHE20 in Mk/bsd.licenses.db.mk 2013-12-30 20:55:18 +00:00
libgenome Fix properties on pkg-plist 2014-01-21 23:18:05 +00:00
libsbml Reduce over inclusion of bsd.port.mk 2014-01-15 22:50:50 +00:00
linux-foldingathome
mafft Convert biology to MDOCS and MEXAMPLES 2014-01-03 15:46:52 +00:00
mapm3 - Fix build with clang 2014-01-12 19:07:28 +00:00
migrate
molden - USES=fortran gmake. 2013-12-29 14:30:20 +00:00
mopac
mrbayes
mummer Convert biology to MDOCS and MEXAMPLES 2014-01-03 15:46:52 +00:00
muscle
ncbi-toolkit
njplot Convert biology to MDOCS and MEXAMPLES 2014-01-03 15:46:52 +00:00
ortep3
p5-AcePerl
p5-Bio-ASN1-EntrezGene - add stage support 2014-01-06 09:57:19 +00:00
p5-Bio-Das - support stage 2014-01-05 12:07:20 +00:00
p5-Bio-Das-Lite Support stage 2014-01-20 23:00:56 +00:00
p5-Bio-GFF3 - Update to 1.9 2014-01-23 03:28:37 +00:00
p5-Bio-Glite - support stage 2014-01-05 12:07:20 +00:00
p5-Bio-Graphics
p5-Bio-MAGETAB
p5-Bio-NEXUS
p5-Bio-Phylo - support stage 2014-01-05 12:07:20 +00:00
p5-Bio-SCF - add stage support 2014-01-06 09:44:19 +00:00
p5-bioperl Convert biology to MDOCS and MEXAMPLES 2014-01-03 15:46:52 +00:00
p5-bioperl-run Convert biology to MDOCS and MEXAMPLES 2014-01-03 15:46:52 +00:00
paml Fix properties on pkg-plist 2014-01-21 23:18:05 +00:00
phd2fasta Convert biology to MDOCS and MEXAMPLES 2014-01-03 15:46:52 +00:00
phrap Convert biology to MDOCS and MEXAMPLES 2014-01-03 15:46:52 +00:00
phred Convert biology to MDOCS and MEXAMPLES 2014-01-03 15:46:52 +00:00
phylip
phyml
platon
plink
plinkseq
povchem
primer3
protomol Reduce over inclusion of bsd.port.mk 2014-01-15 22:51:26 +00:00
psi88
py-biopython Python cleanup: 2014-01-13 21:00:02 +00:00
pycogent
pyfasta Python cleanup: 2014-01-13 21:00:02 +00:00
pymol
python-nexus
rasmol
recombine
ruby-bio Reduce over inclusion of bsd.port.mk 2014-01-15 22:52:28 +00:00
seaview
seqan
seqio
seqtools
sim4
ssaha - Fix build on -current 2014-01-25 16:48:05 +00:00
t_coffee
tinker
treepuzzle
treeviewx Stage support 2013-12-30 18:27:32 +00:00
tRNAscan-SE
ugene - Update to version 1.13.0 and improve FreeBSD support; it also builds 2014-01-16 17:17:15 +00:00
velvet Convert biology to MDOCS and MEXAMPLES 2014-01-03 15:46:52 +00:00
wise
xmolwt
Makefile