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ariadne
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Stage support
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2013-11-12 21:54:36 +00:00 |
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artemis
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avida
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- Fix build with clang
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2013-11-27 16:07:51 +00:00 |
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babel
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biococoa
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biojava
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Convert biology to MDOCS and MEXAMPLES
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2014-01-03 15:46:52 +00:00 |
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blast
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Convert biology to MDOCS and MEXAMPLES
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2014-01-03 15:46:52 +00:00 |
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blat
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Add stage support
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2013-11-12 22:02:02 +00:00 |
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boinc-simap
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The hmmer binary was renamed upstream to indicate that it is now an
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2013-12-29 10:41:50 +00:00 |
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chemeq
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clustalw
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- Fix build with clang/libc++.
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2013-12-20 15:29:07 +00:00 |
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consed
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Convert biology to MDOCS and MEXAMPLES
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2014-01-03 15:46:52 +00:00 |
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crux
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In preparation for making libtool generate libraries with a sane name, fix all
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2013-12-11 14:43:51 +00:00 |
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embassy
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In preparation for making libtool generate libraries with a sane name, fix all
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2013-12-11 14:43:51 +00:00 |
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emboss
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In preparation for making libtool generate libraries with a sane name, fix all
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2013-12-11 14:43:51 +00:00 |
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fasta
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fasta3
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Mark as broken: Invalid checksum, seems like the software was rerolled
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2014-01-03 19:46:05 +00:00 |
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fastdnaml
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finchtv
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Convert biology to MDOCS and MEXAMPLES
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2014-01-03 15:46:52 +00:00 |
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fluctuate
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garlic
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genpak
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Respect PORT_OPTIONS:MDOCS
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2013-12-09 01:28:41 +00:00 |
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gff2ps
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gmap
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Support stage
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2013-12-10 17:21:46 +00:00 |
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gperiodic
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grappa
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- Respect CC/CFLAGS
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2013-12-20 13:27:13 +00:00 |
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hmmer
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Stage support
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2013-12-30 18:08:14 +00:00 |
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iolib
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In preparation for making libtool generate libraries with a sane name, fix all
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2013-12-11 14:43:51 +00:00 |
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jalview
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lagan
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- Fix build
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2013-11-27 13:16:47 +00:00 |
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lamarc
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- rename AL2 to APACHE20 in Mk/bsd.licenses.db.mk
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2013-12-30 20:55:18 +00:00 |
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libgenome
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libsbml
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In preparation for making libtool generate libraries with a sane name, fix all
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2013-12-11 14:43:51 +00:00 |
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linux-foldingathome
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mafft
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Convert biology to MDOCS and MEXAMPLES
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2014-01-03 15:46:52 +00:00 |
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mapm3
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migrate
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molden
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- USES=fortran gmake.
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2013-12-29 14:30:20 +00:00 |
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mopac
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In preparation for making libtool generate libraries with a sane name, fix all
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2013-12-11 14:43:51 +00:00 |
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mrbayes
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Support stage
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2013-12-10 17:54:12 +00:00 |
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mummer
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Convert biology to MDOCS and MEXAMPLES
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2014-01-03 15:46:52 +00:00 |
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muscle
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ncbi-toolkit
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njplot
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Convert biology to MDOCS and MEXAMPLES
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2014-01-03 15:46:52 +00:00 |
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ortep3
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USES=fortran, fix LDFLAGS, staging.
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2013-12-17 21:24:17 +00:00 |
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p5-AcePerl
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p5-Bio-ASN1-EntrezGene
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p5-Bio-Das
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p5-Bio-Das-Lite
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p5-Bio-GFF3
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- Update to 1.8
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2013-11-02 19:55:32 +00:00 |
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p5-Bio-Glite
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p5-Bio-Graphics
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p5-Bio-MAGETAB
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- Update to 1.28
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2013-11-28 15:05:08 +00:00 |
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p5-Bio-NEXUS
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p5-Bio-Phylo
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p5-Bio-SCF
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p5-bioperl
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Convert biology to MDOCS and MEXAMPLES
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2014-01-03 15:46:52 +00:00 |
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p5-bioperl-run
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Convert biology to MDOCS and MEXAMPLES
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2014-01-03 15:46:52 +00:00 |
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paml
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Convert biology to MDOCS and MEXAMPLES
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2014-01-03 15:46:52 +00:00 |
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phd2fasta
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Convert biology to MDOCS and MEXAMPLES
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2014-01-03 15:46:52 +00:00 |
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phrap
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Convert biology to MDOCS and MEXAMPLES
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2014-01-03 15:46:52 +00:00 |
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phred
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Convert biology to MDOCS and MEXAMPLES
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2014-01-03 15:46:52 +00:00 |
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phylip
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phyml
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platon
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Version 2013.12.12, USES=fortran, staging.
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2013-12-17 21:55:24 +00:00 |
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plink
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Fix the build with more standards-compliant compilers such as GCC 4.7. [1]
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2013-12-13 09:34:40 +00:00 |
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plinkseq
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In preparation for making libtool generate libraries with a sane name, fix all
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2013-12-11 14:43:51 +00:00 |
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povchem
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Convert to USES=dos2unix
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2013-11-18 13:45:44 +00:00 |
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primer3
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protomol
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In preparation for making libtool generate libraries with a sane name, fix all
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2013-12-11 14:43:51 +00:00 |
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psi88
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USES=fortran, staging, miscellaneous cleanups.
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2013-12-18 16:23:08 +00:00 |
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py-biopython
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pycogent
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pyfasta
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pymol
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In preparation for making libtool generate libraries with a sane name, fix all
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2013-12-11 14:43:51 +00:00 |
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python-nexus
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rasmol
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recombine
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ruby-bio
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seaview
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In preparation for making libtool generate libraries with a sane name, fix all
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2013-12-11 14:43:51 +00:00 |
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seqan
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seqio
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seqtools
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biology/seqtools: update to 4.24
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2013-12-24 17:23:23 +00:00 |
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sim4
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ssaha
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t_coffee
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USES=fortran, staging.
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2013-12-18 17:24:51 +00:00 |
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tinker
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- biology/tinker: USES=fortran, staging.
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2013-12-18 18:27:04 +00:00 |
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treepuzzle
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treeviewx
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Stage support
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2013-12-30 18:27:32 +00:00 |
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tRNAscan-SE
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ugene
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- Install official UGENE documentation (PDF)
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2013-11-01 15:20:28 +00:00 |
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velvet
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Convert biology to MDOCS and MEXAMPLES
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2014-01-03 15:46:52 +00:00 |
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wise
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xmolwt
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Makefile
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biology/seqtools: Tools for visualising sequence alignments
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2013-11-10 11:01:02 +00:00 |
