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mirror of https://git.FreeBSD.org/ports.git synced 2024-11-28 01:06:17 +00:00
freebsd-ports/biology
Gabor Kovesdan 93e805e722 - Update to 2.1.3
- Fix fetching
- Remove old patch and use MAKE_ARGS instead
- portlint(1) and whitespace

Approved by:	erwin (mentor)
2006-12-10 12:39:32 +00:00
..
adun - Local/Tools/Resources now global 2006-12-09 09:40:38 +00:00
ariadne
artemis
avida Mark as broken for i386 4.x 2006-08-10 23:02:49 +00:00
babel
belvu Distfile now checksums successfully. 2006-10-14 16:13:49 +00:00
biojava - Upgrade to the latest beta and unbreak; 2006-11-21 22:35:28 +00:00
blast - Update PORTREVISION to match latest release (see main web site) 2006-06-11 09:13:43 +00:00
blat
boinc-simap - Add hmmer 5.09 application 2006-10-10 11:31:42 +00:00
chemeq
clustalw
coalesce - Deprecate 2006-12-10 12:37:38 +00:00
crimap
distribfold USE_SIZE was obsoleted in rev. 1.484 of bsd.port.mk more than 2006-06-11 15:29:01 +00:00
dna-qc
dotter Unmark BROKEN, it seems to be caused by a stale distfile on ftp-master. 2006-08-03 20:28:00 +00:00
embassy
emboss
fasta
fasta3 - Update to 34.t26.b3 2006-10-31 09:02:04 +00:00
fastdnaml
finchtv
fluctuate - Deprecate 2006-12-10 12:37:38 +00:00
garlic
genpak
gff2ps - Update to 0.98d 2006-10-06 04:12:59 +00:00
gmap Add gmap 2006.04.21, a Genomic Mapping and Alignment Program for mRNA 2006-09-29 04:05:55 +00:00
gperiodic Chase the GNOME X11BASE to LOCALBASE move, and fix the build with the 2006-10-14 08:54:54 +00:00
grappa
hmmer
jalview
kinemage - Respect X11BASE 2006-11-27 22:03:22 +00:00
L-Breeder - Use features of bsd.wx.mk, especially USE_WX 2006-12-01 07:39:02 +00:00
lagan
lamarc
libgenome - s,INSTALLS_SHLIB,USE_LDCONFIG,g 2006-08-14 10:08:25 +00:00
linux-foldingathome Folding@Home is a distributed computing project -- people from through out the 2006-08-28 22:33:45 +00:00
lsysexp - Add MASTER_SITE 2006-06-06 10:07:55 +00:00
mafft
migrate - Update to 2.1.3 2006-12-10 12:39:32 +00:00
molden Unbreak: molden has been updated on Aug 17, with the same DISTNAME. 2006-09-17 13:41:56 +00:00
mopac - Fix pkg-plist [1] 2006-07-10 05:32:58 +00:00
nab
ncbi-toolkit - Respect X11BASE 2006-12-09 07:49:55 +00:00
ortep3
p5-AcePerl - Mark broken on amd64 < 6. We got following 2006-12-04 04:13:30 +00:00
p5-Bio-ASN1-EntrezGene
p5-Bio-Das Correct path to Compress::Zlib.pm after recent p5-Compress-Zlib update. 2006-12-03 12:45:59 +00:00
p5-Bio-Phylo - Update to 0.14 2006-12-07 15:43:27 +00:00
p5-bioperl
p5-bioperl-devel
p5-bioperl-run
p5-bioperl-run-devel
paml
phylip - Respect X11BASE 2006-12-02 20:34:11 +00:00
platon
povchem
primer3
protomol
psi88
py-biopython - Update to 1.42 2006-10-31 13:25:21 +00:00
pymol Fix build on amd64 2006-09-17 11:51:56 +00:00
rasmol
recombine - Deprecate 2006-12-10 12:37:38 +00:00
ruby-bio
seaview Chase pdf library and bump PORTREVISION. 2006-10-09 08:18:35 +00:00
seqio
sim4
t_coffee
tinker
treepuzzle
treeviewx - Allow wxWidgets 2.6 alongside 2.4, this port works with both 2006-10-09 07:16:37 +00:00
tRNAscan-SE
wise
xdrawchem Mark as BROKEN on sparc64 due to internal compiler error. 2006-07-03 22:22:09 +00:00
xmolwt
Makefile Adun is a new extendible molecular simulation program that also 2006-11-09 20:16:54 +00:00